ISSba2
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009997 | ND | Shewanella baltica | Shewanella baltica OS223 Shewanella baltica OS195 Shewanella baltica OS185 |
DNA section
IS Length : 1217 bp
Ends
IR Length : 20/26
IRL : CAGGGCGAGATCGCACTTTGTTAAAAAAATTGAACTATTCCGCAATGCCA
IRR : CAGGGCCGGAGCATACTTTGTTAAATTGATTTAACATCTGCAAAAATCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCTTGGTTTTAAAGTTGG | CGACTTTCCT | AATGCTGAACGTTT | 10 |
DNA sequence
CAGGGCGAGATCGCACTTTGTTAAAAAAATTGAACTATTCCGCAATGCCATGATCTGAATGAGAAATTAATTACTTGGCCACTCTCCATGTCACTTTTTG
ATCACCTATCTTTAGTCGAAGACACGCGCTCACACATTAATCAACGCCACAACCTTGTCGACGTACTGTTCTTAATCTTATCGGCAGTAGCCAGTGGGCA
AGATGGTTGGGCAGAAATTCAACAGTTCGGCGAGCTAAAACTTGAGTGGCTACGTAAGTTTCGTCCATTTGCTAATGGCATTCCCCGTCGGCATACCATA
GCACGTATCCTAAAAGCCGTAGGGCCGGAGAATTTGCAGTTGTGCCTATTCAGTTGGATTAACGACATCCGCACCGCATCAGCTAAACCCATCATTGCTA
TCGATGGTAAAACACTCAGAGGTGCCTCTAAGTTAGGGTGCAACACCTTACATTCCGTGGGTGCGTTCGACATTAATAATGGCTTGGCGCTTTATCAAGA
AATGGCCTCTGGAAAAGGCAAGGAAATTGAAACGGTACAATCACTTATTACCATGCTTAACATAAATAAAGCATTGATAACCATGGATGCTTTGCATGCC
CAACGCGCGACGCTGGAAGCGATAGTCGCTCGTAAAGGAGATTATGTGGTGCAGGTGAAAAGTAATCAACGGACTTTATTTCAAGCAGTTAAAGCGCAGT
ATGATGTGGCCTTCCAAGATGACAGTCAGTTAGCCCAATTTGCCTGTTCGGAAAAAGGGCATGGAAGAACAGAGCAGCGGATTACATTTCAAATCCCATC
GAAGCTGAGTCCTAAATTGCAAGAAAAGTGGCCTTCAGTTAAGACATTAATAGCCGTTGAGCGACACAGAAAAATAGGCAATAAGACCAGCATAGAGACC
AGTTTCTATCTCTCATCCCATGATATCGATCCCGAATATATTGCGACTGCTGTCCGAGGGCACTGGCGAATTGAGAATAGTCTGCACTGGGTCCTGGATG
TGGTTTATCGAGAAGATGCTTGTCGGGTTCACGAGCAAAGAACTGCCGAATCACTGGCGATAGTGAGGCGAATGGCCCTGAATCTGGCAAAACTCGAAAT
AACACAAAAACGCAGTATGAAGAGTAAGTTACATCGTTCTTTACTCAGTGATGAATATCGGGAATTGATGATTTTTGCAGATGTTAAATCAATTTAACAA
AGTATGCTCCGGCCCTG
ATCACCTATCTTTAGTCGAAGACACGCGCTCACACATTAATCAACGCCACAACCTTGTCGACGTACTGTTCTTAATCTTATCGGCAGTAGCCAGTGGGCA
AGATGGTTGGGCAGAAATTCAACAGTTCGGCGAGCTAAAACTTGAGTGGCTACGTAAGTTTCGTCCATTTGCTAATGGCATTCCCCGTCGGCATACCATA
GCACGTATCCTAAAAGCCGTAGGGCCGGAGAATTTGCAGTTGTGCCTATTCAGTTGGATTAACGACATCCGCACCGCATCAGCTAAACCCATCATTGCTA
TCGATGGTAAAACACTCAGAGGTGCCTCTAAGTTAGGGTGCAACACCTTACATTCCGTGGGTGCGTTCGACATTAATAATGGCTTGGCGCTTTATCAAGA
AATGGCCTCTGGAAAAGGCAAGGAAATTGAAACGGTACAATCACTTATTACCATGCTTAACATAAATAAAGCATTGATAACCATGGATGCTTTGCATGCC
CAACGCGCGACGCTGGAAGCGATAGTCGCTCGTAAAGGAGATTATGTGGTGCAGGTGAAAAGTAATCAACGGACTTTATTTCAAGCAGTTAAAGCGCAGT
ATGATGTGGCCTTCCAAGATGACAGTCAGTTAGCCCAATTTGCCTGTTCGGAAAAAGGGCATGGAAGAACAGAGCAGCGGATTACATTTCAAATCCCATC
GAAGCTGAGTCCTAAATTGCAAGAAAAGTGGCCTTCAGTTAAGACATTAATAGCCGTTGAGCGACACAGAAAAATAGGCAATAAGACCAGCATAGAGACC
AGTTTCTATCTCTCATCCCATGATATCGATCCCGAATATATTGCGACTGCTGTCCGAGGGCACTGGCGAATTGAGAATAGTCTGCACTGGGTCCTGGATG
TGGTTTATCGAGAAGATGCTTGTCGGGTTCACGAGCAAAGAACTGCCGAATCACTGGCGATAGTGAGGCGAATGGCCCTGAATCTGGCAAAACTCGAAAT
AACACAAAAACGCAGTATGAAGAGTAAGTTACATCGTTCTTTACTCAGTGATGAATATCGGGAATTGATGATTTTTGCAGATGTTAAATCAATTTAACAA
AGTATGCTCCGGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1110 bp | 369 aa | 88 | 1197 | + | No |
Chemistry : Unknow
ORF sequence :
MSLFDHLSLVEDTRSHINQRHNLVDVLFLILSAVASGQDGWAEIQQFGELKLEWLRKFRPFANGIPRRHTIARILKAVGPENLQLCLFSWINDIRTASAK
PIIAIDGKTLRGASKLGCNTLHSVGAFDINNGLALYQEMASGKGKEIETVQSLITMLNINKALITMDALHAQRATLEAIVARKGDYVVQVKSNQRTLFQA
VKAQYDVAFQDDSQLAQFACSEKGHGRTEQRITFQIPSKLSPKLQEKWPSVKTLIAVERHRKIGNKTSIETSFYLSSHDIDPEYIATAVRGHWRIENSLH
WVLDVVYREDACRVHEQRTAESLAIVRRMALNLAKLEITQKRSMKSKLHRSLLSDEYRELMIFADVKSI
PIIAIDGKTLRGASKLGCNTLHSVGAFDINNGLALYQEMASGKGKEIETVQSLITMLNINKALITMDALHAQRATLEAIVARKGDYVVQVKSNQRTLFQA
VKAQYDVAFQDDSQLAQFACSEKGHGRTEQRITFQIPSKLSPKLQEKWPSVKTLIAVERHRKIGNKTSIETSFYLSSHDIDPEYIATAVRGHWRIENSLH
WVLDVVYREDACRVHEQRTAESLAIVRRMALNLAKLEITQKRSMKSKLHRSLLSDEYRELMIFADVKSI
Blast result :
Comments
ISSba2 is 67% aa similar to ISSba1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank.