ISSba2

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009997 ND Shewanella baltica
Shewanella baltica OS223
Shewanella baltica OS195
Shewanella baltica OS185
DNA section
IS Length : 1217 bp

Ends


IR Length : 20/26

IRL : CAGGGCGAGATCGCACTTTGTTAAAAAAATTGAACTATTCCGCAATGCCA
IRR : CAGGGCCGGAGCATACTTTGTTAAATTGATTTAACATCTGCAAAAATCAT

Insertion site


Left flankDirect repeatRight flankDR Length
CTCTTGGTTTTAAAGTTGGCGACTTTCCTAATGCTGAACGTTT10

DNA sequence

CAGGGCGAGATCGCACTTTGTTAAAAAAATTGAACTATTCCGCAATGCCATGATCTGAATGAGAAATTAATTACTTGGCCACTCTCCATGTCACTTTTTG
ATCACCTATCTTTAGTCGAAGACACGCGCTCACACATTAATCAACGCCACAACCTTGTCGACGTACTGTTCTTAATCTTATCGGCAGTAGCCAGTGGGCA
AGATGGTTGGGCAGAAATTCAACAGTTCGGCGAGCTAAAACTTGAGTGGCTACGTAAGTTTCGTCCATTTGCTAATGGCATTCCCCGTCGGCATACCATA
GCACGTATCCTAAAAGCCGTAGGGCCGGAGAATTTGCAGTTGTGCCTATTCAGTTGGATTAACGACATCCGCACCGCATCAGCTAAACCCATCATTGCTA
TCGATGGTAAAACACTCAGAGGTGCCTCTAAGTTAGGGTGCAACACCTTACATTCCGTGGGTGCGTTCGACATTAATAATGGCTTGGCGCTTTATCAAGA
AATGGCCTCTGGAAAAGGCAAGGAAATTGAAACGGTACAATCACTTATTACCATGCTTAACATAAATAAAGCATTGATAACCATGGATGCTTTGCATGCC
CAACGCGCGACGCTGGAAGCGATAGTCGCTCGTAAAGGAGATTATGTGGTGCAGGTGAAAAGTAATCAACGGACTTTATTTCAAGCAGTTAAAGCGCAGT
ATGATGTGGCCTTCCAAGATGACAGTCAGTTAGCCCAATTTGCCTGTTCGGAAAAAGGGCATGGAAGAACAGAGCAGCGGATTACATTTCAAATCCCATC
GAAGCTGAGTCCTAAATTGCAAGAAAAGTGGCCTTCAGTTAAGACATTAATAGCCGTTGAGCGACACAGAAAAATAGGCAATAAGACCAGCATAGAGACC
AGTTTCTATCTCTCATCCCATGATATCGATCCCGAATATATTGCGACTGCTGTCCGAGGGCACTGGCGAATTGAGAATAGTCTGCACTGGGTCCTGGATG
TGGTTTATCGAGAAGATGCTTGTCGGGTTCACGAGCAAAGAACTGCCGAATCACTGGCGATAGTGAGGCGAATGGCCCTGAATCTGGCAAAACTCGAAAT
AACACAAAAACGCAGTATGAAGAGTAAGTTACATCGTTCTTTACTCAGTGATGAATATCGGGAATTGATGATTTTTGCAGATGTTAAATCAATTTAACAA
AGTATGCTCCGGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1110 bp369 aa881197+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSLFDHLSLVEDTRSHINQRHNLVDVLFLILSAVASGQDGWAEIQQFGELKLEWLRKFRPFANGIPRRHTIARILKAVGPENLQLCLFSWINDIRTASAK
PIIAIDGKTLRGASKLGCNTLHSVGAFDINNGLALYQEMASGKGKEIETVQSLITMLNINKALITMDALHAQRATLEAIVARKGDYVVQVKSNQRTLFQA
VKAQYDVAFQDDSQLAQFACSEKGHGRTEQRITFQIPSKLSPKLQEKWPSVKTLIAVERHRKIGNKTSIETSFYLSSHDIDPEYIATAVRGHWRIENSLH
WVLDVVYREDACRVHEQRTAESLAIVRRMALNLAKLEITQKRSMKSKLHRSLLSDEYRELMIFADVKSI

 

Blast result :
Comments
ISSba2 is 67% aa similar to ISSba1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank.