ISBlma8

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AANZ01000007 ND Blastopirellula marina
Blastopirellula marina DSM 3645
DNA section
IS Length : 1263 bp

Ends


IR Length : 16/19

IRL : CACGGCGATTGCGCCATGATGGGCAACCTGCGACAATCCGGCAAGTGCGT
IRR : CACGGCGATCGCACCATAAATCACGTCCCCAGCAACACTTCCAACAAGTA

Insertion site


Left flankDirect repeatRight flankDR Length
TTGATATCTGCGACAATCACTCCACCAGAAGACTACACTATACCCCC10

DNA sequence

CACGGCGATTGCGCCATGATGGGCAACCTGCGACAATCCGGCAAGTGCGTCTTGGCGGTTTCGTGATTGCTTGATCGCGGCCAAGCGTTTGTCTTGCCGA
GAGTTGTTCAGCATGTCGTCTTCATCGCGCGCTTCGATTCAAGAACACTTCGCCGATCTGACGGATCCGCGGACTCGCAAGGTAACTTATCCGCTAGTCA
ACATCGTCACGATGTCGCTCTGTGCGGTGCTAGGTGGAGCAGATGATTTCGTTGCGATCACTGACTGGGCCGAAGACAAGAAAGAGTGGCTTTCGCAGTT
CCTCGACATGAGCACCGGCGTTCCTTCGCATGATCGCTTCAACGCGATTCTCGGCGCTTTGAAGCCGGCTGAATTTGAGAAGTGTTTGCTTAGCTGGATC
ACTTCGTTGCAAGAGATTACCGATGGGCAGATTATCGCGATCGACGGCAAAACTTTGCGGCGCAGCTTTGACGCCGCCAGCAGCAAGGCCGCGATTCATA
TGGTCAGCGCCTGGGCGACCGCCAATCATGTGAGTCTCGGGCAAGTCGCGACTGACGCGAAGAGTAATGAGATCACGGCGATTCCGAAATTGCTCGAAAT
CATCGAGGTTTCCGGCTGTTTGGTGACGATCGACGCGATGGGTTGTCAGAAAGAGATCGCCGCCAAGATCGTTAACGCAGGCGGTGATTACTGTCTGGCG
ATTAAAGGGAATCAGCGTTATCTGCATCAAGCGATTCGCGATCACTTCGCCGCTGCGATGGAAATCGACTTTGCGAAAATGAAAGTTCACCGCCACGAGA
CGCACGAGAAAGGGCATGGCCGCGAAGAGTCGCGTTACTACTATCTCTGTCCAATCGACGCCGATGATTTTCCGTACGCCTCGCGTTGGACGAAGCTGAA
GGCGATCGGAATGACGATCAATATCGTCAAGCAAAACGGCAAAGAGACGAGTGAAGTACGCTACTACATCGTGAGCAAATATCTCACCGGCAAACGCTTC
GCCGAAGCGGTCCGAGGGCACTGGAGCATTGAGAATTCGCTCCACTGGCAACTCGACGTAACGTTCGGCGAAGACCAAAGTCGAATCCGCAAAGGCCACG
CCGACGTCAACTTCAGTCTGCTAAGAAGAACAAGCCTGAGCTTGTTGAAGAACAACAAAACGGCGAAGGTGGGCGTGAAGAACAAGCGGCTAAAAGCTGG
AAGGAACGACGCCTACTTGTTGGAAGTGTTGCTGGGGACGTGATTTATGGTGCGATCGCCGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1173 bp390 aa711243+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MIAAKRLSCRELFSMSSSSRASIQEHFADLTDPRTRKVTYPLVNIVTMSLCAVLGGADDFVAITDWAEDKKEWLSQFLDMSTGVPSHDRFNAILGALKPA
EFEKCLLSWITSLQEITDGQIIAIDGKTLRRSFDAASSKAAIHMVSAWATANHVSLGQVATDAKSNEITAIPKLLEIIEVSGCLVTIDAMGCQKEIAAKI
VNAGGDYCLAIKGNQRYLHQAIRDHFAAAMEIDFAKMKVHRHETHEKGHGREESRYYYLCPIDADDFPYASRWTKLKAIGMTINIVKQNGKETSEVRYYI
VSKYLTGKRFAEAVRGHWSIENSLHWQLDVTFGEDQSRIRKGHADVNFSLLRRTSLSLLKNNKTAKVGVKNKRLKAGRNDAYLLEVLLGT

 

Blast result :
Comments
ISBlma8 is 64% aa similar to ISAcma2.
References
1] Amann,R., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.