ISBlma8
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AANZ01000007 | ND | Blastopirellula marina | Blastopirellula marina DSM 3645 |
DNA section
IS Length : 1263 bp
Ends
IR Length : 16/19
IRL : CACGGCGATTGCGCCATGATGGGCAACCTGCGACAATCCGGCAAGTGCGT
IRR : CACGGCGATCGCACCATAAATCACGTCCCCAGCAACACTTCCAACAAGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGATATCTGCGACAATCA | CTCCACCAGA | AGACTACACTATACCCCC | 10 |
DNA sequence
CACGGCGATTGCGCCATGATGGGCAACCTGCGACAATCCGGCAAGTGCGTCTTGGCGGTTTCGTGATTGCTTGATCGCGGCCAAGCGTTTGTCTTGCCGA
GAGTTGTTCAGCATGTCGTCTTCATCGCGCGCTTCGATTCAAGAACACTTCGCCGATCTGACGGATCCGCGGACTCGCAAGGTAACTTATCCGCTAGTCA
ACATCGTCACGATGTCGCTCTGTGCGGTGCTAGGTGGAGCAGATGATTTCGTTGCGATCACTGACTGGGCCGAAGACAAGAAAGAGTGGCTTTCGCAGTT
CCTCGACATGAGCACCGGCGTTCCTTCGCATGATCGCTTCAACGCGATTCTCGGCGCTTTGAAGCCGGCTGAATTTGAGAAGTGTTTGCTTAGCTGGATC
ACTTCGTTGCAAGAGATTACCGATGGGCAGATTATCGCGATCGACGGCAAAACTTTGCGGCGCAGCTTTGACGCCGCCAGCAGCAAGGCCGCGATTCATA
TGGTCAGCGCCTGGGCGACCGCCAATCATGTGAGTCTCGGGCAAGTCGCGACTGACGCGAAGAGTAATGAGATCACGGCGATTCCGAAATTGCTCGAAAT
CATCGAGGTTTCCGGCTGTTTGGTGACGATCGACGCGATGGGTTGTCAGAAAGAGATCGCCGCCAAGATCGTTAACGCAGGCGGTGATTACTGTCTGGCG
ATTAAAGGGAATCAGCGTTATCTGCATCAAGCGATTCGCGATCACTTCGCCGCTGCGATGGAAATCGACTTTGCGAAAATGAAAGTTCACCGCCACGAGA
CGCACGAGAAAGGGCATGGCCGCGAAGAGTCGCGTTACTACTATCTCTGTCCAATCGACGCCGATGATTTTCCGTACGCCTCGCGTTGGACGAAGCTGAA
GGCGATCGGAATGACGATCAATATCGTCAAGCAAAACGGCAAAGAGACGAGTGAAGTACGCTACTACATCGTGAGCAAATATCTCACCGGCAAACGCTTC
GCCGAAGCGGTCCGAGGGCACTGGAGCATTGAGAATTCGCTCCACTGGCAACTCGACGTAACGTTCGGCGAAGACCAAAGTCGAATCCGCAAAGGCCACG
CCGACGTCAACTTCAGTCTGCTAAGAAGAACAAGCCTGAGCTTGTTGAAGAACAACAAAACGGCGAAGGTGGGCGTGAAGAACAAGCGGCTAAAAGCTGG
AAGGAACGACGCCTACTTGTTGGAAGTGTTGCTGGGGACGTGATTTATGGTGCGATCGCCGTG
GAGTTGTTCAGCATGTCGTCTTCATCGCGCGCTTCGATTCAAGAACACTTCGCCGATCTGACGGATCCGCGGACTCGCAAGGTAACTTATCCGCTAGTCA
ACATCGTCACGATGTCGCTCTGTGCGGTGCTAGGTGGAGCAGATGATTTCGTTGCGATCACTGACTGGGCCGAAGACAAGAAAGAGTGGCTTTCGCAGTT
CCTCGACATGAGCACCGGCGTTCCTTCGCATGATCGCTTCAACGCGATTCTCGGCGCTTTGAAGCCGGCTGAATTTGAGAAGTGTTTGCTTAGCTGGATC
ACTTCGTTGCAAGAGATTACCGATGGGCAGATTATCGCGATCGACGGCAAAACTTTGCGGCGCAGCTTTGACGCCGCCAGCAGCAAGGCCGCGATTCATA
TGGTCAGCGCCTGGGCGACCGCCAATCATGTGAGTCTCGGGCAAGTCGCGACTGACGCGAAGAGTAATGAGATCACGGCGATTCCGAAATTGCTCGAAAT
CATCGAGGTTTCCGGCTGTTTGGTGACGATCGACGCGATGGGTTGTCAGAAAGAGATCGCCGCCAAGATCGTTAACGCAGGCGGTGATTACTGTCTGGCG
ATTAAAGGGAATCAGCGTTATCTGCATCAAGCGATTCGCGATCACTTCGCCGCTGCGATGGAAATCGACTTTGCGAAAATGAAAGTTCACCGCCACGAGA
CGCACGAGAAAGGGCATGGCCGCGAAGAGTCGCGTTACTACTATCTCTGTCCAATCGACGCCGATGATTTTCCGTACGCCTCGCGTTGGACGAAGCTGAA
GGCGATCGGAATGACGATCAATATCGTCAAGCAAAACGGCAAAGAGACGAGTGAAGTACGCTACTACATCGTGAGCAAATATCTCACCGGCAAACGCTTC
GCCGAAGCGGTCCGAGGGCACTGGAGCATTGAGAATTCGCTCCACTGGCAACTCGACGTAACGTTCGGCGAAGACCAAAGTCGAATCCGCAAAGGCCACG
CCGACGTCAACTTCAGTCTGCTAAGAAGAACAAGCCTGAGCTTGTTGAAGAACAACAAAACGGCGAAGGTGGGCGTGAAGAACAAGCGGCTAAAAGCTGG
AAGGAACGACGCCTACTTGTTGGAAGTGTTGCTGGGGACGTGATTTATGGTGCGATCGCCGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1173 bp | 390 aa | 71 | 1243 | + | No |
Chemistry : Unknow
ORF sequence :
MIAAKRLSCRELFSMSSSSRASIQEHFADLTDPRTRKVTYPLVNIVTMSLCAVLGGADDFVAITDWAEDKKEWLSQFLDMSTGVPSHDRFNAILGALKPA
EFEKCLLSWITSLQEITDGQIIAIDGKTLRRSFDAASSKAAIHMVSAWATANHVSLGQVATDAKSNEITAIPKLLEIIEVSGCLVTIDAMGCQKEIAAKI
VNAGGDYCLAIKGNQRYLHQAIRDHFAAAMEIDFAKMKVHRHETHEKGHGREESRYYYLCPIDADDFPYASRWTKLKAIGMTINIVKQNGKETSEVRYYI
VSKYLTGKRFAEAVRGHWSIENSLHWQLDVTFGEDQSRIRKGHADVNFSLLRRTSLSLLKNNKTAKVGVKNKRLKAGRNDAYLLEVLLGT
EFEKCLLSWITSLQEITDGQIIAIDGKTLRRSFDAASSKAAIHMVSAWATANHVSLGQVATDAKSNEITAIPKLLEIIEVSGCLVTIDAMGCQKEIAAKI
VNAGGDYCLAIKGNQRYLHQAIRDHFAAAMEIDFAKMKVHRHETHEKGHGREESRYYYLCPIDADDFPYASRWTKLKAIGMTINIVKQNGKETSEVRYYI
VSKYLTGKRFAEAVRGHWSIENSLHWQLDVTFGEDQSRIRKGHADVNFSLLRRTSLSLLKNNKTAKVGVKNKRLKAGRNDAYLLEVLLGT
Blast result :
Comments
ISBlma8 is 64% aa similar to ISAcma2.
References
1] Amann,R., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.