ISRba7

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005027 ND Rhodopirellula baltica
Rhodopirellula baltica SH 1
DNA section
IS Length : 1302 bp

Ends


IR Length : 19/20

IRL : CACGGCGATCGCATCAAATTTCGGAAGAAGTATTCGATTGCCGGTTGTCT
IRR : CACGGCGATCGCATCAAAATCATGCTGAGAACATGAGTTTCTCGAGGAAG

Insertion site


Left flankDirect repeatRight flankDR Length
TAGCAATGCCCCGGCGTATCCACGTCTGAT10

DNA sequence

CACGGCGATCGCATCAAATTTCGGAAGAAGTATTCGATTGCCGGTTGTCTTGGTGAAGACCTGTTGCGAAAGATTGCGTGAACTCGTTTGATTCATGCCC
TGCTATGGAGACGGCAATGCTTTCGCAAATCGATGTGTTTCACGACTGCTTTGATCAGGTCGAAGACCCTCGCGTTCCCGGACGAACCACGCATCCGTTG
AACTCCATTTTGTTCCTAGTGGTTGCTGCGACGATCGCCGATGCCGACGGTCCCGAAGAGATCGAGTGTTTTGGAAATGAACGACTCGATTGGCTCAGTC
GCTTTGCAGATTTCCCTCACGGCATCCCCTCGCACGACACCATCGGTCGAGTCCTGTCACTGATCAAACCAGAGCAGTTTCAGCAAGCTTTGCTAGACTG
GCACACACAACTTTGTCAGCAATATCGCGACGCCGAAGACAAGCTTGATCGTGATGAAGAGCAGTCTCTGCCCATTCATGTTGCGATTGATGGCAAGACC
GCACGCGGCTCTTACACCAACGCTGAGAAATCAAACGCAATTCACTTTGTATCCGCTTGGGCTTCCAAACATGGAGTCACTCTTGGGCAAACCGAAGTGG
ATTCAAAAACCAACGAAATCACAGCAATTGATGAGCTTTTAGACTTCATTGATGTCCGTGGCACCATTATCACGCTCGATGCAATCGGAGCCCAGAAGTC
GATTGCTGAGAAGATTCATCGTAATGGCGGCGACTACATTTTCGCGATCAAAGACAACCATCCCAAGTTGGCCAATGCCATCCGTGAACACTTCGAGTTG
GTTCACGAAGAAGGGCTGAAAGCCAATGGAGTGAAGTCGAAGAAGACGGTGGGAAAAAAGAGTGGCCGACAGGAAGAACGATTCTACGCTGTTTGCCCGA
TACCACCTGAGATGAAAGCCATGACAGATCTCTGGGCAGGTGCGACGAGCATCGGCCAAGCCATCACGCAAACGGAGCGAAATGGAGAGTGCCATGTCGA
GGTTCGTTATTTCCTGCTCAGTCGACCTGCCCGGGTAGGAGAGTTCGCAATCAGTGTCCGGAGTCACTGGAGCGTGGAGTCCATGCACTGGGTGTTGGAT
GTCGTGTTCCACGACGATGCCAGCCGCATTCGGACCAAGAACGCGACGGCGAATTTCACGTTCATCCGTCGTTATGTGACGACGCTTCTCAAGCAGGACA
CTACCAAGCGAAGTCTCAAGCAGAAGCGAAAAAAAGCGGGCTGGAATACCGACTTCCTCGAGAAACTCATGTTCTCAGCATGATTTTGATGCGATCGCCG
TG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1179 bp392 aa1051283+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

METAMLSQIDVFHDCFDQVEDPRVPGRTTHPLNSILFLVVAATIADADGPEEIECFGNERLDWLSRFADFPHGIPSHDTIGRVLSLIKPEQFQQALLDWH
TQLCQQYRDAEDKLDRDEEQSLPIHVAIDGKTARGSYTNAEKSNAIHFVSAWASKHGVTLGQTEVDSKTNEITAIDELLDFIDVRGTIITLDAIGAQKSI
AEKIHRNGGDYIFAIKDNHPKLANAIREHFELVHEEGLKANGVKSKKTVGKKSGRQEERFYAVCPIPPEMKAMTDLWAGATSIGQAITQTERNGECHVEV
RYFLLSRPARVGEFAISVRSHWSVESMHWVLDVVFHDDASRIRTKNATANFTFIRRYVTTLLKQDTTKRSLKQKRKKAGWNTDFLEKLMFSA

 

Blast result :
Comments
ISRba7 is 55% aa similar to ISBlma7.
References
1] Gloeckner,F.O., Kube,M., Bauer,M., Teeling,H., Lombardot,T., Ludwig,W., Gade,D., Beck,A., Borzym,K., Heitmann,K., Rabus,R., Schlesner,H., Amann,R. and Reinhardt,R. (2003) Proc. Natl. Acad. Sci. U.S.A. 100 (14), 8298-8303