ISRba7
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005027 | ND | Rhodopirellula baltica | Rhodopirellula baltica SH 1 |
DNA section
IS Length : 1302 bp
Ends
IR Length : 19/20
IRL : CACGGCGATCGCATCAAATTTCGGAAGAAGTATTCGATTGCCGGTTGTCT
IRR : CACGGCGATCGCATCAAAATCATGCTGAGAACATGAGTTTCTCGAGGAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGCAATGCC | CCGGCGTATC | CACGTCTGAT | 10 |
DNA sequence
CACGGCGATCGCATCAAATTTCGGAAGAAGTATTCGATTGCCGGTTGTCTTGGTGAAGACCTGTTGCGAAAGATTGCGTGAACTCGTTTGATTCATGCCC
TGCTATGGAGACGGCAATGCTTTCGCAAATCGATGTGTTTCACGACTGCTTTGATCAGGTCGAAGACCCTCGCGTTCCCGGACGAACCACGCATCCGTTG
AACTCCATTTTGTTCCTAGTGGTTGCTGCGACGATCGCCGATGCCGACGGTCCCGAAGAGATCGAGTGTTTTGGAAATGAACGACTCGATTGGCTCAGTC
GCTTTGCAGATTTCCCTCACGGCATCCCCTCGCACGACACCATCGGTCGAGTCCTGTCACTGATCAAACCAGAGCAGTTTCAGCAAGCTTTGCTAGACTG
GCACACACAACTTTGTCAGCAATATCGCGACGCCGAAGACAAGCTTGATCGTGATGAAGAGCAGTCTCTGCCCATTCATGTTGCGATTGATGGCAAGACC
GCACGCGGCTCTTACACCAACGCTGAGAAATCAAACGCAATTCACTTTGTATCCGCTTGGGCTTCCAAACATGGAGTCACTCTTGGGCAAACCGAAGTGG
ATTCAAAAACCAACGAAATCACAGCAATTGATGAGCTTTTAGACTTCATTGATGTCCGTGGCACCATTATCACGCTCGATGCAATCGGAGCCCAGAAGTC
GATTGCTGAGAAGATTCATCGTAATGGCGGCGACTACATTTTCGCGATCAAAGACAACCATCCCAAGTTGGCCAATGCCATCCGTGAACACTTCGAGTTG
GTTCACGAAGAAGGGCTGAAAGCCAATGGAGTGAAGTCGAAGAAGACGGTGGGAAAAAAGAGTGGCCGACAGGAAGAACGATTCTACGCTGTTTGCCCGA
TACCACCTGAGATGAAAGCCATGACAGATCTCTGGGCAGGTGCGACGAGCATCGGCCAAGCCATCACGCAAACGGAGCGAAATGGAGAGTGCCATGTCGA
GGTTCGTTATTTCCTGCTCAGTCGACCTGCCCGGGTAGGAGAGTTCGCAATCAGTGTCCGGAGTCACTGGAGCGTGGAGTCCATGCACTGGGTGTTGGAT
GTCGTGTTCCACGACGATGCCAGCCGCATTCGGACCAAGAACGCGACGGCGAATTTCACGTTCATCCGTCGTTATGTGACGACGCTTCTCAAGCAGGACA
CTACCAAGCGAAGTCTCAAGCAGAAGCGAAAAAAAGCGGGCTGGAATACCGACTTCCTCGAGAAACTCATGTTCTCAGCATGATTTTGATGCGATCGCCG
TG
TGCTATGGAGACGGCAATGCTTTCGCAAATCGATGTGTTTCACGACTGCTTTGATCAGGTCGAAGACCCTCGCGTTCCCGGACGAACCACGCATCCGTTG
AACTCCATTTTGTTCCTAGTGGTTGCTGCGACGATCGCCGATGCCGACGGTCCCGAAGAGATCGAGTGTTTTGGAAATGAACGACTCGATTGGCTCAGTC
GCTTTGCAGATTTCCCTCACGGCATCCCCTCGCACGACACCATCGGTCGAGTCCTGTCACTGATCAAACCAGAGCAGTTTCAGCAAGCTTTGCTAGACTG
GCACACACAACTTTGTCAGCAATATCGCGACGCCGAAGACAAGCTTGATCGTGATGAAGAGCAGTCTCTGCCCATTCATGTTGCGATTGATGGCAAGACC
GCACGCGGCTCTTACACCAACGCTGAGAAATCAAACGCAATTCACTTTGTATCCGCTTGGGCTTCCAAACATGGAGTCACTCTTGGGCAAACCGAAGTGG
ATTCAAAAACCAACGAAATCACAGCAATTGATGAGCTTTTAGACTTCATTGATGTCCGTGGCACCATTATCACGCTCGATGCAATCGGAGCCCAGAAGTC
GATTGCTGAGAAGATTCATCGTAATGGCGGCGACTACATTTTCGCGATCAAAGACAACCATCCCAAGTTGGCCAATGCCATCCGTGAACACTTCGAGTTG
GTTCACGAAGAAGGGCTGAAAGCCAATGGAGTGAAGTCGAAGAAGACGGTGGGAAAAAAGAGTGGCCGACAGGAAGAACGATTCTACGCTGTTTGCCCGA
TACCACCTGAGATGAAAGCCATGACAGATCTCTGGGCAGGTGCGACGAGCATCGGCCAAGCCATCACGCAAACGGAGCGAAATGGAGAGTGCCATGTCGA
GGTTCGTTATTTCCTGCTCAGTCGACCTGCCCGGGTAGGAGAGTTCGCAATCAGTGTCCGGAGTCACTGGAGCGTGGAGTCCATGCACTGGGTGTTGGAT
GTCGTGTTCCACGACGATGCCAGCCGCATTCGGACCAAGAACGCGACGGCGAATTTCACGTTCATCCGTCGTTATGTGACGACGCTTCTCAAGCAGGACA
CTACCAAGCGAAGTCTCAAGCAGAAGCGAAAAAAAGCGGGCTGGAATACCGACTTCCTCGAGAAACTCATGTTCTCAGCATGATTTTGATGCGATCGCCG
TG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1179 bp | 392 aa | 105 | 1283 | + | No |
Chemistry : Unknow
ORF sequence :
METAMLSQIDVFHDCFDQVEDPRVPGRTTHPLNSILFLVVAATIADADGPEEIECFGNERLDWLSRFADFPHGIPSHDTIGRVLSLIKPEQFQQALLDWH
TQLCQQYRDAEDKLDRDEEQSLPIHVAIDGKTARGSYTNAEKSNAIHFVSAWASKHGVTLGQTEVDSKTNEITAIDELLDFIDVRGTIITLDAIGAQKSI
AEKIHRNGGDYIFAIKDNHPKLANAIREHFELVHEEGLKANGVKSKKTVGKKSGRQEERFYAVCPIPPEMKAMTDLWAGATSIGQAITQTERNGECHVEV
RYFLLSRPARVGEFAISVRSHWSVESMHWVLDVVFHDDASRIRTKNATANFTFIRRYVTTLLKQDTTKRSLKQKRKKAGWNTDFLEKLMFSA
TQLCQQYRDAEDKLDRDEEQSLPIHVAIDGKTARGSYTNAEKSNAIHFVSAWASKHGVTLGQTEVDSKTNEITAIDELLDFIDVRGTIITLDAIGAQKSI
AEKIHRNGGDYIFAIKDNHPKLANAIREHFELVHEEGLKANGVKSKKTVGKKSGRQEERFYAVCPIPPEMKAMTDLWAGATSIGQAITQTERNGECHVEV
RYFLLSRPARVGEFAISVRSHWSVESMHWVLDVVFHDDASRIRTKNATANFTFIRRYVTTLLKQDTTKRSLKQKRKKAGWNTDFLEKLMFSA
Blast result :
Comments
ISRba7 is 55% aa similar to ISBlma7.
References
1] Gloeckner,F.O., Kube,M., Bauer,M., Teeling,H., Lombardot,T., Ludwig,W., Gade,D., Beck,A., Borzym,K., Heitmann,K., Rabus,R., Schlesner,H., Amann,R. and Reinhardt,R. (2003) Proc. Natl. Acad. Sci. U.S.A. 100 (14), 8298-8303