ISPpr12

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006371 ND Photobacterium profundum
Photobacterium profundum SS9
DNA section
IS Length : 1326 bp

Ends


IR Length : 18/21

IRL : CAGGGAATCCGCATGAACATCGTTGATATATAAGGGCTAAGCTTTAATTA
IRR : CACGGAAAACGCATGAACATCCCCGTCCTTACTGGCTTCCCAGTACCTTG

Insertion site


Left flankDirect repeatRight flankDR Length
CAATTGCCTCATTGGGTGGGAAGCACCTACTCGCTGATCATTGG10

DNA sequence

CAGGGAATCCGCATGAACATCGTTGATATATAAGGGCTAAGCTTTAATTAGCAATAACTAAAGTATAATCTTATTATTATACTCACTTCACAATATTAGC
AATTAAAGAAAGATCAAATTGTAGATCATTTTCATTGTTTTCTAATGGTTCTGTATTCAAACGGAGCCTAATTATGACGGAATTAATAAACCCATTTATG
CACTTTCATGTAATTAAAGATTATCGCCAAGCTGGCAAAATTAACCACAAATTATCAGATATAATTCTGATGACAATTTGTGGTGTTTTGTCTGGTCATG
ATACGTGGGAAGGTGTGGTTGATTTTGGTCGTTTACGACTAGACTTTCTAAAGCAATATGGTGACTTCAAAGAAGGTATTCCTTCTGCAGATACCATTGC
TAGAGTCATGGGAATGATGAGTACGACAGCTCTGCAGAATGCTTTCATTAAATGGATGAGAGATTGCCATACCTTAACGGATGGTGAAGTTGTTGCTATT
GATGGCAAAACAGTTCGAGGGTCTTATGATAAATCACGAGATCAGCAAGCAATCCATATGGTTAATGCTTTTGCTACAGCAAATGGGATGTGTCTTGGTC
AGGCTAAAGTAAATGCTAAGACTAATGAGATTACTGAAATCCCTAAGCTATTGGAACTATTAGATATCGCGGGTTGTTTAGTGACTATTGATGCGATGGG
TTGCCAGCGAAAAATAGCACAAAAGATAGTCGATAAAAGTGCTGATTATTTACTTGCCGTTAAAGGAAATCAAGGCAAGTTAGAAGAGGCCTTTTCTGAA
TATTATCATCCATCGATGCTACAAGAATTCAGCGGTGATAGTTATGCTAGCCAAGACAAATCCCATGGACGTTTAGAAACAAGATGTGCTTTGGTTAATA
AGGATTTATCGGTTTTAGGTGACTTAGCGTATGATTGGCCAGAGCTAAAATCGATGGGAATAATGGTCAATATTCGCCAAAATTCAGAGCATGCTACAGA
CGAAAATATGTCAGTGAGATTTTACATAAGCTCGAAAGAATTAAGTGCTCAAGAACTGCATGATGCAACGCGTTCACATTGGCAAGTTGAGTCGATGCAT
TGGGTATTAGATACTGCATTCAAAGAAGATGCTTGTCGAATCCGAGCGGACGATCGTGCCGAGGCTTTCGCAAGGATCAGGCCGGTGTGTTTGAACCTTT
TGAAGAATGAAAAAGGGTTCAAAGGTGGAATTAAACGTAAGCGAATGCAGTGTGCGATGGATGAAAACTACCTAAGCAAGGTACTGGGAAGCCAGTAAGG
ACGGGGATGTTCATGCGTTTTCCGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1125 bp374 aa1741298+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTELINPFMHFHVIKDYRQAGKINHKLSDIILMTICGVLSGHDTWEGVVDFGRLRLDFLKQYGDFKEGIPSADTIARVMGMMSTTALQNAFIKWMRDCHT
LTDGEVVAIDGKTVRGSYDKSRDQQAIHMVNAFATANGMCLGQAKVNAKTNEITEIPKLLELLDIAGCLVTIDAMGCQRKIAQKIVDKSADYLLAVKGNQ
GKLEEAFSEYYHPSMLQEFSGDSYASQDKSHGRLETRCALVNKDLSVLGDLAYDWPELKSMGIMVNIRQNSEHATDENMSVRFYISSKELSAQELHDATR
SHWQVESMHWVLDTAFKEDACRIRADDRAEAFARIRPVCLNLLKNEKGFKGGIKRKRMQCAMDENYLSKVLGSQ

 

Blast result :
Comments
ISPpr12 is 86% aa similar to IS1358A.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F.M., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Romualdi,C., Bartlett,D.H. and Valle,G. (2005) Science 307 (5714), 1459-1461