ISPlu18

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 1253 bp

Ends


IR Length : 18/26

IRL : CAGGGTGAGATCTCACATTTTTAATAAGGTCATTTTGGTTAAATAAAAAT
IRR : CAGGGCGGGATTCCACTTTGTATTTAATTTAATCAAAGATAAGTTGACTA

Insertion site


Left flankDirect repeatRight flankDR Length
ACTAATCGGTTTGCCTATATGTGATTTAAATCTCAAA10

DNA sequence

CAGGGTGAGATCTCACATTTTTAATAAGGTCATTTTGGTTAAATAAAAATCAGAATATGATTTTTTATAGGCATTTCTCTCATTAAAACGTTAAGATCTC
CCTCTTCCATAAAAAGCGATCCTAATAATGAGTATTTTTAATTTTATCAGCAAGATAGAAGACCCCCGTTCTGACATCAATAAAAAACATGAGTTAATGG
ATGTGATTTTTTTAGCCTTCTCCGCTGTATTATGCGGCGCTTCTGGCTGGAAATCGATTCAGGAATTTGGTGAGTTACAGAGCGAGTGGCTTAAACAATA
CACGCATTTTACTCACGGTATTCCTCGTCGTCACTGTATTGCTAATATTATCAAAATGATAGAGCAAGATGCACTGGTTGAAGCCTTTTATGCCTGGATC
AACCAGCGTCGGGTCAGGGCAGGAAAAAGTCTTATCGCCATTGATGGAAAAACCCTGAGAGGAACCTGTAAGGGGACATTATTTGAAGCCCTGCATGTGG
TCAGTGCTTATGATGTTGAATCCGGTGTAGCCCTATACCATCAGGCAGCCGAAAGCAAAGGTCAGGAAGGCCCGGTTGCCAGACAATTGATTGAATTACT
GGCGCTTGATGGCGCGATTGTCACTATGGATGCCCTGCATTGCCAGAAAGAAACCCTTGCGTTAATTACTCAGCGCGGTGGTGATTTTATTGTGGGTCTC
AAAGGCAATCAAAAGACCCTCCATGAATGGGTCAAATCGTATTTTGCTTCGCATTATGAGAGTGATGAGCTTGTTGAATTTACGCAGAAAAATAGCGGTC
ATGGACGGACAGAATTTCGGCATGTCATGCAAATTCGTGCCGTATTACCGGAGGTCCTTCGGCGGCAATGGCCTTCAATACAAAGTGTTATTGAAGTCGT
CAGTGAACGAAGCGTAAAAGGTCAGCCTCCCCATCGTAATTCACGCTGGTATGTCAGCTCGCTACCGTTGGAGGCGGAAATCGTGGCTAAGGCAATAAGA
AAGCACGGGTCGGTGGAAAACGAGCTGCATTGGGTATTAGATGTCACTTTTCGAGAAGATGCTATCTCACTCAAAGATCCTGATGGGGCTGCACAAATGG
CGCTTTTTAACCGAATTGCATTAAGTGTGATTAAACAGAATACCAGCATAAAAGACAGTCAGGCAGCTAAACGTCGAAGAGCCATTTGGTCAGGGGAATT
CCGTAGTCAACTTATCTTTGATTAAATTAAATACAAAGTGGAATCCCGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1098 bp365 aa1281225+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSIFNFISKIEDPRSDINKKHELMDVIFLAFSAVLCGASGWKSIQEFGELQSEWLKQYTHFTHGIPRRHCIANIIKMIEQDALVEAFYAWINQRRVRAGK
SLIAIDGKTLRGTCKGTLFEALHVVSAYDVESGVALYHQAAESKGQEGPVARQLIELLALDGAIVTMDALHCQKETLALITQRGGDFIVGLKGNQKTLHE
WVKSYFASHYESDELVEFTQKNSGHGRTEFRHVMQIRAVLPEVLRRQWPSIQSVIEVVSERSVKGQPPHRNSRWYVSSLPLEAEIVAKAIRKHGSVENEL
HWVLDVTFREDAISLKDPDGAAQMALFNRIALSVIKQNTSIKDSQAAKRRRAIWSGEFRSQLIFD

 

Blast result :
Comments
ISPlu18 is 63% aa similar to ISAs1.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Givaudan,A., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Charles,J.F., Dassa,E., Derose,R., Derzelle,S., Freyssinet,G., Gaudriault,S., Medigue,C., Lanois,A., Powell,K., Siguier,P., Vincent,R., Wingate,V., Zouine,M., Glaser,P., Boemare,N., Danchin,A. and Kunst,F. (2003) Nat. Biotechnol. 21 (11), 1307-1313