ISCbu1
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAUP02000009 | ND | Coxiella burnetii | Coxiella burnetii MSU Goat Q177 |
DNA section
IS Length : 1324 bp
Ends
IR Length : 25
IRL : CAGGGCGATTTCACCAAAGTTCAAATTAGATTCAAAAAAACGAAAGAAAA
IRR : CAGGGCGATTTCACCAAAGTTCAAAACCCTACCACTTTTCTTAAATATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGGGTAATTTGCCGC | GGGGGCGCA | ATAAAAAACCCG | 9 |
DNA sequence
CAGGGCGATTTCACCAAAGTTCAAATTAGATTCAAAAAAACGAAAGAAAATTAATTAAGGAAGGCCCAAGAAGTAGACAATGATTAATAAATGCGTTAAA
GATCAAGCTCCTACGTTTCTAGACGTAGATTTAAAAAATCTTAACAAGGAGCTTGATCATGGAAAAAACTACGTGCAAATCGTTAAAAAATCAATACCTA
TTCCACTGTTTTTTGAGCATTAAAGACCCGCGTGTTCCAGGGAGATGTATTTACCCATTGATTAATATTCTCCTCATCACGCTTTGCGCCTTGATTTGTG
GGGTTGATACGTGGAAAGGGATTGCCGACTTTGGTAAGAAACGCTATCGGTGGCTCAGTCAATTTGTCAATATGCGCTGTGGGGTTCCAAGCACACTGAC
TTTTGCGCGCGTTTTTTCATTAATTGAACCTGAACAATTCCAACATTGTTTGTCGGCTTGGATGAGTCAGTTTTTTCAATTGTTGCGCTTTGACATGATT
CATCTGGATGGAAAAAGCCTTTGTGGTTCAGCGAGGAGAGGCAAAGCACAAAAAGCAACCCATATTGTGAATGCGTACCTTCCCAAAGAACAAGTGACGC
TGGGAGAAGTTCGGGTGCCCGATAAAAGCAATGAAATAAAAGCCATACCTATTCTTTTAAATAGCTTGAATGTCCAAGGCTGTATTATCAGTATCGACGC
GATGGGGACTCAAAAAGGCATTGCTAATTTAATTCGCTTAAAACAGGCCGACTATGTACTGGCACTTAAAAAAAATCACACACGATTTTATCGTTATGTG
GAACGATTGTTTAGCTGCAGTGATGAGAGAGATTATCAAGGCATGTGTTATCGCACAGAAGAAACCAAGGATTATGGCCATGGTCGGATTGAAGAAAGGA
GCTATTGTGTTTTGCCGATGATGTATTTTCATAAATACAAAAAATATTGGCGTGATTTGCAGGCGATCGTTCGTGTTCAATCAAAACGGCATAAAGGGAA
TGAAATAGAAACGGCCACCCGGTATTACATCACTTCATTACCCTTTGCAGAACATAGAAGGATGTCTCAAGCCATTCGTCAGCACTGGGCTATTGAAAAT
CAACTCCATTGGAAATTGGATATTGGTTTGGGCGAAGACGCCTCTCTCATTACGCGAGGCTATGCCGATCAGAATCTCGCAACGCTTCGAAAAATGGTGC
TAAAAATGCTGGAAAACGAAAACTCTTCCAAACAGGGGATCGCTGGAAAACGCATACAGGCCGCTCTTTCTACACGATATTTAAGAAAAGTGGTAGGGTT
TTGAACTTTGGTGAAATCGCCCTG
GATCAAGCTCCTACGTTTCTAGACGTAGATTTAAAAAATCTTAACAAGGAGCTTGATCATGGAAAAAACTACGTGCAAATCGTTAAAAAATCAATACCTA
TTCCACTGTTTTTTGAGCATTAAAGACCCGCGTGTTCCAGGGAGATGTATTTACCCATTGATTAATATTCTCCTCATCACGCTTTGCGCCTTGATTTGTG
GGGTTGATACGTGGAAAGGGATTGCCGACTTTGGTAAGAAACGCTATCGGTGGCTCAGTCAATTTGTCAATATGCGCTGTGGGGTTCCAAGCACACTGAC
TTTTGCGCGCGTTTTTTCATTAATTGAACCTGAACAATTCCAACATTGTTTGTCGGCTTGGATGAGTCAGTTTTTTCAATTGTTGCGCTTTGACATGATT
CATCTGGATGGAAAAAGCCTTTGTGGTTCAGCGAGGAGAGGCAAAGCACAAAAAGCAACCCATATTGTGAATGCGTACCTTCCCAAAGAACAAGTGACGC
TGGGAGAAGTTCGGGTGCCCGATAAAAGCAATGAAATAAAAGCCATACCTATTCTTTTAAATAGCTTGAATGTCCAAGGCTGTATTATCAGTATCGACGC
GATGGGGACTCAAAAAGGCATTGCTAATTTAATTCGCTTAAAACAGGCCGACTATGTACTGGCACTTAAAAAAAATCACACACGATTTTATCGTTATGTG
GAACGATTGTTTAGCTGCAGTGATGAGAGAGATTATCAAGGCATGTGTTATCGCACAGAAGAAACCAAGGATTATGGCCATGGTCGGATTGAAGAAAGGA
GCTATTGTGTTTTGCCGATGATGTATTTTCATAAATACAAAAAATATTGGCGTGATTTGCAGGCGATCGTTCGTGTTCAATCAAAACGGCATAAAGGGAA
TGAAATAGAAACGGCCACCCGGTATTACATCACTTCATTACCCTTTGCAGAACATAGAAGGATGTCTCAAGCCATTCGTCAGCACTGGGCTATTGAAAAT
CAACTCCATTGGAAATTGGATATTGGTTTGGGCGAAGACGCCTCTCTCATTACGCGAGGCTATGCCGATCAGAATCTCGCAACGCTTCGAAAAATGGTGC
TAAAAATGCTGGAAAACGAAAACTCTTCCAAACAGGGGATCGCTGGAAAACGCATACAGGCCGCTCTTTCTACACGATATTTAAGAAAAGTGGTAGGGTT
TTGAACTTTGGTGAAATCGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1146 bp | 381 aa | 159 | 1304 | + | No |
Chemistry : Unknow
ORF sequence :
MEKTTCKSLKNQYLFHCFLSIKDPRVPGRCIYPLINILLITLCALICGVDTWKGIADFGKKRYRWLSQFVNMRCGVPSTLTFARVFSLIEPEQFQHCLSA
WMSQFFQLLRFDMIHLDGKSLCGSARRGKAQKATHIVNAYLPKEQVTLGEVRVPDKSNEIKAIPILLNSLNVQGCIISIDAMGTQKGIANLIRLKQADYV
LALKKNHTRFYRYVERLFSCSDERDYQGMCYRTEETKDYGHGRIEERSYCVLPMMYFHKYKKYWRDLQAIVRVQSKRHKGNEIETATRYYITSLPFAEHR
RMSQAIRQHWAIENQLHWKLDIGLGEDASLITRGYADQNLATLRKMVLKMLENENSSKQGIAGKRIQAALSTRYLRKVVGF
WMSQFFQLLRFDMIHLDGKSLCGSARRGKAQKATHIVNAYLPKEQVTLGEVRVPDKSNEIKAIPILLNSLNVQGCIISIDAMGTQKGIANLIRLKQADYV
LALKKNHTRFYRYVERLFSCSDERDYQGMCYRTEETKDYGHGRIEERSYCVLPMMYFHKYKKYWRDLQAIVRVQSKRHKGNEIETATRYYITSLPFAEHR
RMSQAIRQHWAIENQLHWKLDIGLGEDASLITRGYADQNLATLRKMVLKMLENENSSKQGIAGKRIQAALSTRYLRKVVGF
Blast result :
Comments
ISCbu1 is 59% aa similar to ISAcma2.
References
1] Seshadri,R. and Samuel,J.E. (2006) Direct submission GenBank.