ISCbu1

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAUP02000009 ND Coxiella burnetii
Coxiella burnetii MSU Goat Q177
DNA section
IS Length : 1324 bp

Ends


IR Length : 25

IRL : CAGGGCGATTTCACCAAAGTTCAAATTAGATTCAAAAAAACGAAAGAAAA
IRR : CAGGGCGATTTCACCAAAGTTCAAAACCCTACCACTTTTCTTAAATATCG

Insertion site


Left flankDirect repeatRight flankDR Length
GTGGGTAATTTGCCGCGGGGGCGCAATAAAAAACCCG9

DNA sequence

CAGGGCGATTTCACCAAAGTTCAAATTAGATTCAAAAAAACGAAAGAAAATTAATTAAGGAAGGCCCAAGAAGTAGACAATGATTAATAAATGCGTTAAA
GATCAAGCTCCTACGTTTCTAGACGTAGATTTAAAAAATCTTAACAAGGAGCTTGATCATGGAAAAAACTACGTGCAAATCGTTAAAAAATCAATACCTA
TTCCACTGTTTTTTGAGCATTAAAGACCCGCGTGTTCCAGGGAGATGTATTTACCCATTGATTAATATTCTCCTCATCACGCTTTGCGCCTTGATTTGTG
GGGTTGATACGTGGAAAGGGATTGCCGACTTTGGTAAGAAACGCTATCGGTGGCTCAGTCAATTTGTCAATATGCGCTGTGGGGTTCCAAGCACACTGAC
TTTTGCGCGCGTTTTTTCATTAATTGAACCTGAACAATTCCAACATTGTTTGTCGGCTTGGATGAGTCAGTTTTTTCAATTGTTGCGCTTTGACATGATT
CATCTGGATGGAAAAAGCCTTTGTGGTTCAGCGAGGAGAGGCAAAGCACAAAAAGCAACCCATATTGTGAATGCGTACCTTCCCAAAGAACAAGTGACGC
TGGGAGAAGTTCGGGTGCCCGATAAAAGCAATGAAATAAAAGCCATACCTATTCTTTTAAATAGCTTGAATGTCCAAGGCTGTATTATCAGTATCGACGC
GATGGGGACTCAAAAAGGCATTGCTAATTTAATTCGCTTAAAACAGGCCGACTATGTACTGGCACTTAAAAAAAATCACACACGATTTTATCGTTATGTG
GAACGATTGTTTAGCTGCAGTGATGAGAGAGATTATCAAGGCATGTGTTATCGCACAGAAGAAACCAAGGATTATGGCCATGGTCGGATTGAAGAAAGGA
GCTATTGTGTTTTGCCGATGATGTATTTTCATAAATACAAAAAATATTGGCGTGATTTGCAGGCGATCGTTCGTGTTCAATCAAAACGGCATAAAGGGAA
TGAAATAGAAACGGCCACCCGGTATTACATCACTTCATTACCCTTTGCAGAACATAGAAGGATGTCTCAAGCCATTCGTCAGCACTGGGCTATTGAAAAT
CAACTCCATTGGAAATTGGATATTGGTTTGGGCGAAGACGCCTCTCTCATTACGCGAGGCTATGCCGATCAGAATCTCGCAACGCTTCGAAAAATGGTGC
TAAAAATGCTGGAAAACGAAAACTCTTCCAAACAGGGGATCGCTGGAAAACGCATACAGGCCGCTCTTTCTACACGATATTTAAGAAAAGTGGTAGGGTT
TTGAACTTTGGTGAAATCGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1146 bp381 aa1591304+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEKTTCKSLKNQYLFHCFLSIKDPRVPGRCIYPLINILLITLCALICGVDTWKGIADFGKKRYRWLSQFVNMRCGVPSTLTFARVFSLIEPEQFQHCLSA
WMSQFFQLLRFDMIHLDGKSLCGSARRGKAQKATHIVNAYLPKEQVTLGEVRVPDKSNEIKAIPILLNSLNVQGCIISIDAMGTQKGIANLIRLKQADYV
LALKKNHTRFYRYVERLFSCSDERDYQGMCYRTEETKDYGHGRIEERSYCVLPMMYFHKYKKYWRDLQAIVRVQSKRHKGNEIETATRYYITSLPFAEHR
RMSQAIRQHWAIENQLHWKLDIGLGEDASLITRGYADQNLATLRKMVLKMLENENSSKQGIAGKRIQAALSTRYLRKVVGF

 

Blast result :
Comments
ISCbu1 is 59% aa similar to ISAcma2.
References
1] Seshadri,R. and Samuel,J.E. (2006) Direct submission GenBank.