ISVsh1

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABCH01000012 ND Vibrio shilonii
Vibrio shilonii AK1
DNA section
IS Length : 1226 bp

Ends


IR Length : 16/21

IRL : CACGGCAAGATCATTATAAATTGGAACTTTTGATTGAAGAGGCGATCAGA
IRR : CACGGCTAAAGCATTTTAATTCTAGCGTTTAAAAGAACCGAGCGATACTC

Insertion site


Left flankDirect repeatRight flankDR Length
AAGCGATAGAGCGAACTTAGAAGGATGATTACGT10

DNA sequence

CACGGCAAGATCATTATAAATTGGAACTTTTGATTGAAGAGGCGATCAGATCAATGAGTAATCACTTATTGTAGCGTTTAAAGTATGACCGACTCTTTTC
TCCAACATTTTGAAGCCATTGAAGACCTACGTACTGACCGATGTAAGCGACATGAACTTCTCGATATTATCCTTTTAGCCGTCAGTGCTGTCCTCTCAGG
AGCTGAAGGTTGGGAGCAAATTGAAGATTTTGGCATTCATCGTCTAGATTGGCTTCGACGTTATCGTCCCTTCGAATATGGTATTCCACAGCAATGTACC
ATTGCTCGCGTTATATGCCATTTTAAGCCAGAAGAAATAGAGACAGCGTTTCAACGCTGGATGAGCTGTCTTATTGAGTCTACAGGGAGTGATGTCATTG
CCATTGATGGCAAAACAGCTCGACGCTCTTTTGATACGCGCGAAAGGCGAAATCCACTCCATAAGGTCAGCGCTTGGAGTAGTCAACATCAGTTAGTTCT
CGGGCAAGTCGCGGTTGATGAGAAGAGCAACGAGATATCTGCTATCCCAAGGTTACTCACATTACTTGATATTGAGAATTGTATCATCACGCTAGACGCA
ATGGGGTGTCAAAAAGACATTGCTAAGCAGATTGTTAAAGGTAAAGCGGATTACGTATTGGCCTTAAAAGGCAATCACTCAGGAATGAAAGCAGAGCTTG
AAGCTTGGTGGCACAAGTCAATGCGAGAAGGAACAACGGCTAAAACATATAACGAGTTCAGCGACGTAAGTGCAGGGCATGGACGCATTGAAACACGTCG
TTGTGAGCAGTTAATCATTGATAGAACCTGGTTAGACAAAGGTTTTCGTTGCGATGGCTTGCAGAGTGTAATCAAAGTAACCGCCACAGTTGAAGAAAAA
TTAAGTGGTAAAAAATCCGAAGAAACTCGATGGTATATCAGTTCACTAGCCCTCAACGCGCAACAAGCACTGGATGCTGTAAGAAGCCACTGGCAGGTAG
AAAGTATGCATTGGATGTTAGATGTAACGTTTAGAGAAGATGAGTCACGCATCCGCAGAGGCACGGGAGCTTTAGCTTTCAATGTCCTGAGGAAAATCGC
ATTAAGCCTTTTTAAACAAGACACAAGTAAAAACATCAGCATGCTAAGAAAGAAGAAGATAGCGGCTCTTGATGATGAGTATCGCTCGGTTCTTTTAAAC
GCTAGAATTAAAATGCTTTAGCCGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1137 bp378 aa851221+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTDSFLQHFEAIEDLRTDRCKRHELLDIILLAVSAVLSGAEGWEQIEDFGIHRLDWLRRYRPFEYGIPQQCTIARVICHFKPEEIETAFQRWMSCLIEST
GSDVIAIDGKTARRSFDTRERRNPLHKVSAWSSQHQLVLGQVAVDEKSNEISAIPRLLTLLDIENCIITLDAMGCQKDIAKQIVKGKADYVLALKGNHSG
MKAELEAWWHKSMREGTTAKTYNEFSDVSAGHGRIETRRCEQLIIDRTWLDKGFRCDGLQSVIKVTATVEEKLSGKKSEETRWYISSLALNAQQALDAVR
SHWQVESMHWMLDVTFREDESRIRRGTGALAFNVLRKIALSLFKQDTSKNISMLRKKKIAALDDEYRSVLLNARIKML

 

Blast result :
Comments
ISVsh1 is 61% aa similar to ISCwa3.
References
1] Rosenberg,E., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.