ISVsh1
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABCH01000012 | ND | Vibrio shilonii | Vibrio shilonii AK1 |
DNA section
IS Length : 1226 bp
Ends
IR Length : 16/21
IRL : CACGGCAAGATCATTATAAATTGGAACTTTTGATTGAAGAGGCGATCAGA
IRR : CACGGCTAAAGCATTTTAATTCTAGCGTTTAAAAGAACCGAGCGATACTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGCGATAGA | GCGAACTTAG | AAGGATGATTACGT | 10 |
DNA sequence
CACGGCAAGATCATTATAAATTGGAACTTTTGATTGAAGAGGCGATCAGATCAATGAGTAATCACTTATTGTAGCGTTTAAAGTATGACCGACTCTTTTC
TCCAACATTTTGAAGCCATTGAAGACCTACGTACTGACCGATGTAAGCGACATGAACTTCTCGATATTATCCTTTTAGCCGTCAGTGCTGTCCTCTCAGG
AGCTGAAGGTTGGGAGCAAATTGAAGATTTTGGCATTCATCGTCTAGATTGGCTTCGACGTTATCGTCCCTTCGAATATGGTATTCCACAGCAATGTACC
ATTGCTCGCGTTATATGCCATTTTAAGCCAGAAGAAATAGAGACAGCGTTTCAACGCTGGATGAGCTGTCTTATTGAGTCTACAGGGAGTGATGTCATTG
CCATTGATGGCAAAACAGCTCGACGCTCTTTTGATACGCGCGAAAGGCGAAATCCACTCCATAAGGTCAGCGCTTGGAGTAGTCAACATCAGTTAGTTCT
CGGGCAAGTCGCGGTTGATGAGAAGAGCAACGAGATATCTGCTATCCCAAGGTTACTCACATTACTTGATATTGAGAATTGTATCATCACGCTAGACGCA
ATGGGGTGTCAAAAAGACATTGCTAAGCAGATTGTTAAAGGTAAAGCGGATTACGTATTGGCCTTAAAAGGCAATCACTCAGGAATGAAAGCAGAGCTTG
AAGCTTGGTGGCACAAGTCAATGCGAGAAGGAACAACGGCTAAAACATATAACGAGTTCAGCGACGTAAGTGCAGGGCATGGACGCATTGAAACACGTCG
TTGTGAGCAGTTAATCATTGATAGAACCTGGTTAGACAAAGGTTTTCGTTGCGATGGCTTGCAGAGTGTAATCAAAGTAACCGCCACAGTTGAAGAAAAA
TTAAGTGGTAAAAAATCCGAAGAAACTCGATGGTATATCAGTTCACTAGCCCTCAACGCGCAACAAGCACTGGATGCTGTAAGAAGCCACTGGCAGGTAG
AAAGTATGCATTGGATGTTAGATGTAACGTTTAGAGAAGATGAGTCACGCATCCGCAGAGGCACGGGAGCTTTAGCTTTCAATGTCCTGAGGAAAATCGC
ATTAAGCCTTTTTAAACAAGACACAAGTAAAAACATCAGCATGCTAAGAAAGAAGAAGATAGCGGCTCTTGATGATGAGTATCGCTCGGTTCTTTTAAAC
GCTAGAATTAAAATGCTTTAGCCGTG
TCCAACATTTTGAAGCCATTGAAGACCTACGTACTGACCGATGTAAGCGACATGAACTTCTCGATATTATCCTTTTAGCCGTCAGTGCTGTCCTCTCAGG
AGCTGAAGGTTGGGAGCAAATTGAAGATTTTGGCATTCATCGTCTAGATTGGCTTCGACGTTATCGTCCCTTCGAATATGGTATTCCACAGCAATGTACC
ATTGCTCGCGTTATATGCCATTTTAAGCCAGAAGAAATAGAGACAGCGTTTCAACGCTGGATGAGCTGTCTTATTGAGTCTACAGGGAGTGATGTCATTG
CCATTGATGGCAAAACAGCTCGACGCTCTTTTGATACGCGCGAAAGGCGAAATCCACTCCATAAGGTCAGCGCTTGGAGTAGTCAACATCAGTTAGTTCT
CGGGCAAGTCGCGGTTGATGAGAAGAGCAACGAGATATCTGCTATCCCAAGGTTACTCACATTACTTGATATTGAGAATTGTATCATCACGCTAGACGCA
ATGGGGTGTCAAAAAGACATTGCTAAGCAGATTGTTAAAGGTAAAGCGGATTACGTATTGGCCTTAAAAGGCAATCACTCAGGAATGAAAGCAGAGCTTG
AAGCTTGGTGGCACAAGTCAATGCGAGAAGGAACAACGGCTAAAACATATAACGAGTTCAGCGACGTAAGTGCAGGGCATGGACGCATTGAAACACGTCG
TTGTGAGCAGTTAATCATTGATAGAACCTGGTTAGACAAAGGTTTTCGTTGCGATGGCTTGCAGAGTGTAATCAAAGTAACCGCCACAGTTGAAGAAAAA
TTAAGTGGTAAAAAATCCGAAGAAACTCGATGGTATATCAGTTCACTAGCCCTCAACGCGCAACAAGCACTGGATGCTGTAAGAAGCCACTGGCAGGTAG
AAAGTATGCATTGGATGTTAGATGTAACGTTTAGAGAAGATGAGTCACGCATCCGCAGAGGCACGGGAGCTTTAGCTTTCAATGTCCTGAGGAAAATCGC
ATTAAGCCTTTTTAAACAAGACACAAGTAAAAACATCAGCATGCTAAGAAAGAAGAAGATAGCGGCTCTTGATGATGAGTATCGCTCGGTTCTTTTAAAC
GCTAGAATTAAAATGCTTTAGCCGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1137 bp | 378 aa | 85 | 1221 | + | No |
Chemistry : Unknow
ORF sequence :
MTDSFLQHFEAIEDLRTDRCKRHELLDIILLAVSAVLSGAEGWEQIEDFGIHRLDWLRRYRPFEYGIPQQCTIARVICHFKPEEIETAFQRWMSCLIEST
GSDVIAIDGKTARRSFDTRERRNPLHKVSAWSSQHQLVLGQVAVDEKSNEISAIPRLLTLLDIENCIITLDAMGCQKDIAKQIVKGKADYVLALKGNHSG
MKAELEAWWHKSMREGTTAKTYNEFSDVSAGHGRIETRRCEQLIIDRTWLDKGFRCDGLQSVIKVTATVEEKLSGKKSEETRWYISSLALNAQQALDAVR
SHWQVESMHWMLDVTFREDESRIRRGTGALAFNVLRKIALSLFKQDTSKNISMLRKKKIAALDDEYRSVLLNARIKML
GSDVIAIDGKTARRSFDTRERRNPLHKVSAWSSQHQLVLGQVAVDEKSNEISAIPRLLTLLDIENCIITLDAMGCQKDIAKQIVKGKADYVLALKGNHSG
MKAELEAWWHKSMREGTTAKTYNEFSDVSAGHGRIETRRCEQLIIDRTWLDKGFRCDGLQSVIKVTATVEEKLSGKKSEETRWYISSLALNAQQALDAVR
SHWQVESMHWMLDVTFREDESRIRRGTGALAFNVLRKIALSLFKQDTSKNISMLRKKKIAALDDEYRSVLLNARIKML
Blast result :
Comments
ISVsh1 is 61% aa similar to ISCwa3.
References
1] Rosenberg,E., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.