ISCysp2
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXW01000043 | ND | Cyanothece sp. | Cyanothece sp. CCY 0110 |
DNA section
IS Length : 1360 bp
Ends
IR Length : 21
IRL : CAGGGTAAGCTCATCTAAAATGGTATAAAATTTACTTGACTAAGAAAGCA
IRR : CAGGGTAAGCTCATCTAAAATCCGCTTGATAGAAGGTATTGAGAACAGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTTTAAGCCA | TTCTTCCACT | ACTTGTTCGG | 10 |
DNA sequence
CAGGGTAAGCTCATCTAAAATGGTATAAAATTTACTTGACTAAGAAAGCAAAGTATAGGTGAGGAAAAAAGAGACTTAAAATCAAAAAAACAAAGTACAA
TTAGGACTCTTGTAATTATGGAATCAGAACATGGCCAACGGGTTTGCAGACCAAAAACAATCTAGTAAAAAAAACACAAAAAGGGAAATATAGCATCTAT
TGATGAAATCCAAAACAATTTATTAGGCTATGTCAAAGAAATAGAAGATCCTAGAGTACAAAGAAGCAAAAAACACCTCCTTAAAGATGTATTGGCGATC
GCTATATTGGCAGTAATTGCAGGGGCCCAAGGTTGGGAAGATATGGAGAACTATGGTATCGCAAAACAGGAGTGGTTATCAGAGTTTCTAGAACTACCTC
ACGGAATACCGAGTGATGACACATTTAGAAGAGTTTTTGAGAGAATTGACCCAAAATCCCTGCAAAAATGCCTACAAAAATGGGTTCAATCTATAATGAA
TTCAATTCAAGGTGAAATTATCCCCATCGATGGCAAAACATTAAGGGGTTCTTACGATCGCAATAAGGGACAGTCTGCCTTACATACGGTCACAGCGTGG
GCATCCCAGCAGGGTCTGGTGTTAGGACAAGTCAAAGTAGAAGACCATTCCAACGAAATCACAGCCATCCCTGCCCTAATCGAACTATTAGACATTACAG
GCTCGATCATCACCATTGATGCCATGGGAACTCAAACCAGCATTGTCGAACAAATCCGTGAGCGAAAAGCTGACTACATTCTCACCCTCAAAGCTAATCA
TCCCACTTTATTTTCTCAAGTCCAGCAATGGTTCACCGATACAAGGACTCAAGGTTGGGATGGCATTGATCATGACTACTACAAAACCGTAACCAAGGGT
CATCACCGCACCGAGAAACGATACGTTTGGGCTATACCAGTAGCAGCTATGGGAGAGCTTTACCAGCAACAACAATGGTCTGGACTACAAACAATTGTTG
TAGTCGAACGCATCCGTCACTTGTGGAACAAGACTACCCACGATATTCAGTTTTACCTGACCTCTTTACCTCCCAATGCCCAATTCCTTTGCTATGCTAT
TCGCACTCATTGGAGCATTGAAAACAATCTTCATTGGAAGCTCGATGTCACCTTCCGAGAAGATCAATGTCGTATTCGGTCAGAATATAGTCCACAGAAC
TTTGCTCTTCTAAGACGATTAGCACTTAATGTTCTCCATCAAGAAAAAACATTTAAACGTAGTCTTCGCCAGAAAATGAAGCAAGCTGCTATGAATAACA
ACTATATGATGACTGTTCTCAATACCTTCTATCAAGCGGATTTTAGATGAGCTTACCCTG
TTAGGACTCTTGTAATTATGGAATCAGAACATGGCCAACGGGTTTGCAGACCAAAAACAATCTAGTAAAAAAAACACAAAAAGGGAAATATAGCATCTAT
TGATGAAATCCAAAACAATTTATTAGGCTATGTCAAAGAAATAGAAGATCCTAGAGTACAAAGAAGCAAAAAACACCTCCTTAAAGATGTATTGGCGATC
GCTATATTGGCAGTAATTGCAGGGGCCCAAGGTTGGGAAGATATGGAGAACTATGGTATCGCAAAACAGGAGTGGTTATCAGAGTTTCTAGAACTACCTC
ACGGAATACCGAGTGATGACACATTTAGAAGAGTTTTTGAGAGAATTGACCCAAAATCCCTGCAAAAATGCCTACAAAAATGGGTTCAATCTATAATGAA
TTCAATTCAAGGTGAAATTATCCCCATCGATGGCAAAACATTAAGGGGTTCTTACGATCGCAATAAGGGACAGTCTGCCTTACATACGGTCACAGCGTGG
GCATCCCAGCAGGGTCTGGTGTTAGGACAAGTCAAAGTAGAAGACCATTCCAACGAAATCACAGCCATCCCTGCCCTAATCGAACTATTAGACATTACAG
GCTCGATCATCACCATTGATGCCATGGGAACTCAAACCAGCATTGTCGAACAAATCCGTGAGCGAAAAGCTGACTACATTCTCACCCTCAAAGCTAATCA
TCCCACTTTATTTTCTCAAGTCCAGCAATGGTTCACCGATACAAGGACTCAAGGTTGGGATGGCATTGATCATGACTACTACAAAACCGTAACCAAGGGT
CATCACCGCACCGAGAAACGATACGTTTGGGCTATACCAGTAGCAGCTATGGGAGAGCTTTACCAGCAACAACAATGGTCTGGACTACAAACAATTGTTG
TAGTCGAACGCATCCGTCACTTGTGGAACAAGACTACCCACGATATTCAGTTTTACCTGACCTCTTTACCTCCCAATGCCCAATTCCTTTGCTATGCTAT
TCGCACTCATTGGAGCATTGAAAACAATCTTCATTGGAAGCTCGATGTCACCTTCCGAGAAGATCAATGTCGTATTCGGTCAGAATATAGTCCACAGAAC
TTTGCTCTTCTAAGACGATTAGCACTTAATGTTCTCCATCAAGAAAAAACATTTAAACGTAGTCTTCGCCAGAAAATGAAGCAAGCTGCTATGAATAACA
ACTATATGATGACTGTTCTCAATACCTTCTATCAAGCGGATTTTAGATGAGCTTACCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 352 aa | 292 | 1350 | + | No |
Chemistry : Unknow
ORF sequence :
MAIAILAVIAGAQGWEDMENYGIAKQEWLSEFLELPHGIPSDDTFRRVFERIDPKSLQKCLQKWVQSIMNSIQGEIIPIDGKTLRGSYDRNKGQSALHTV
TAWASQQGLVLGQVKVEDHSNEITAIPALIELLDITGSIITIDAMGTQTSIVEQIRERKADYILTLKANHPTLFSQVQQWFTDTRTQGWDGIDHDYYKTV
TKGHHRTEKRYVWAIPVAAMGELYQQQQWSGLQTIVVVERIRHLWNKTTHDIQFYLTSLPPNAQFLCYAIRTHWSIENNLHWKLDVTFREDQCRIRSEYS
PQNFALLRRLALNVLHQEKTFKRSLRQKMKQAAMNNNYMMTVLNTFYQADFR
TAWASQQGLVLGQVKVEDHSNEITAIPALIELLDITGSIITIDAMGTQTSIVEQIRERKADYILTLKANHPTLFSQVQQWFTDTRTQGWDGIDHDYYKTV
TKGHHRTEKRYVWAIPVAAMGELYQQQQWSGLQTIVVVERIRHLWNKTTHDIQFYLTSLPPNAQFLCYAIRTHWSIENNLHWKLDVTFREDQCRIRSEYS
PQNFALLRRLALNVLHQEKTFKRSLRQKMKQAAMNNNYMMTVLNTFYQADFR
Blast result :
Comments
ISCysp2 is 62% aa similar to ISAcma2.
References
1] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C.(2007) Direct Submission GenBank.