ISCysp2

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAXW01000043 ND Cyanothece sp.
Cyanothece sp. CCY 0110
DNA section
IS Length : 1360 bp

Ends


IR Length : 21

IRL : CAGGGTAAGCTCATCTAAAATGGTATAAAATTTACTTGACTAAGAAAGCA
IRR : CAGGGTAAGCTCATCTAAAATCCGCTTGATAGAAGGTATTGAGAACAGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TGTTTAAGCCATTCTTCCACTACTTGTTCGG10

DNA sequence

CAGGGTAAGCTCATCTAAAATGGTATAAAATTTACTTGACTAAGAAAGCAAAGTATAGGTGAGGAAAAAAGAGACTTAAAATCAAAAAAACAAAGTACAA
TTAGGACTCTTGTAATTATGGAATCAGAACATGGCCAACGGGTTTGCAGACCAAAAACAATCTAGTAAAAAAAACACAAAAAGGGAAATATAGCATCTAT
TGATGAAATCCAAAACAATTTATTAGGCTATGTCAAAGAAATAGAAGATCCTAGAGTACAAAGAAGCAAAAAACACCTCCTTAAAGATGTATTGGCGATC
GCTATATTGGCAGTAATTGCAGGGGCCCAAGGTTGGGAAGATATGGAGAACTATGGTATCGCAAAACAGGAGTGGTTATCAGAGTTTCTAGAACTACCTC
ACGGAATACCGAGTGATGACACATTTAGAAGAGTTTTTGAGAGAATTGACCCAAAATCCCTGCAAAAATGCCTACAAAAATGGGTTCAATCTATAATGAA
TTCAATTCAAGGTGAAATTATCCCCATCGATGGCAAAACATTAAGGGGTTCTTACGATCGCAATAAGGGACAGTCTGCCTTACATACGGTCACAGCGTGG
GCATCCCAGCAGGGTCTGGTGTTAGGACAAGTCAAAGTAGAAGACCATTCCAACGAAATCACAGCCATCCCTGCCCTAATCGAACTATTAGACATTACAG
GCTCGATCATCACCATTGATGCCATGGGAACTCAAACCAGCATTGTCGAACAAATCCGTGAGCGAAAAGCTGACTACATTCTCACCCTCAAAGCTAATCA
TCCCACTTTATTTTCTCAAGTCCAGCAATGGTTCACCGATACAAGGACTCAAGGTTGGGATGGCATTGATCATGACTACTACAAAACCGTAACCAAGGGT
CATCACCGCACCGAGAAACGATACGTTTGGGCTATACCAGTAGCAGCTATGGGAGAGCTTTACCAGCAACAACAATGGTCTGGACTACAAACAATTGTTG
TAGTCGAACGCATCCGTCACTTGTGGAACAAGACTACCCACGATATTCAGTTTTACCTGACCTCTTTACCTCCCAATGCCCAATTCCTTTGCTATGCTAT
TCGCACTCATTGGAGCATTGAAAACAATCTTCATTGGAAGCTCGATGTCACCTTCCGAGAAGATCAATGTCGTATTCGGTCAGAATATAGTCCACAGAAC
TTTGCTCTTCTAAGACGATTAGCACTTAATGTTCTCCATCAAGAAAAAACATTTAAACGTAGTCTTCGCCAGAAAATGAAGCAAGCTGCTATGAATAACA
ACTATATGATGACTGTTCTCAATACCTTCTATCAAGCGGATTTTAGATGAGCTTACCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp352 aa2921350+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MAIAILAVIAGAQGWEDMENYGIAKQEWLSEFLELPHGIPSDDTFRRVFERIDPKSLQKCLQKWVQSIMNSIQGEIIPIDGKTLRGSYDRNKGQSALHTV
TAWASQQGLVLGQVKVEDHSNEITAIPALIELLDITGSIITIDAMGTQTSIVEQIRERKADYILTLKANHPTLFSQVQQWFTDTRTQGWDGIDHDYYKTV
TKGHHRTEKRYVWAIPVAAMGELYQQQQWSGLQTIVVVERIRHLWNKTTHDIQFYLTSLPPNAQFLCYAIRTHWSIENNLHWKLDVTFREDQCRIRSEYS
PQNFALLRRLALNVLHQEKTFKRSLRQKMKQAAMNNNYMMTVLNTFYQADFR

 

Blast result :
Comments
ISCysp2 is 62% aa similar to ISAcma2.
References
1] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C.(2007) Direct Submission GenBank.