ISVha1

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009783 ND Vibrio harveyi
Vibrio harveyi ATCC BAA-1116
DNA section
IS Length : 1238 bp

Ends


IR Length : 11/16

IRL : CAGGGTGAGATCGTGAACGTTTTTTGAACAAAATCACGACCGATTTGACG
IRR : CAGGGCGACCGCATGAGTGCCTAGTTTTTCGCCACCTGACTAAAGCCAGC

Insertion site


Left flankDirect repeatRight flankDR Length
TCGAGGCTCCTCACTTTAGCTATCTTCTTTTTCAAAGCTTCA10

DNA sequence

CAGGGTGAGATCGTGAACGTTTTTTGAACAAAATCACGACCGATTTGACGATCACATTTAGCTGTGATCATATACTCCCTTTTTAGGGAGAACATCATGC
ACATTGACCACTTTAAAGAACATTTTCAAACGATTATCGACCAACGCCAAGGTGCAAAGGTCACTTATTGCCTGTTTGAAGTCCTTTTTGGCTCGCTATG
TGCGGTGATTGCAGGTGCGAAAGGCTGGTTTGATATTCGTGAATATATTCGCGGTCATCATGATTGGTTTAAGCGTAATAATTTGTTTTTGAATGGTATT
CCTGCGGATGACACCATTGCTCGCATCATCTCTACCATTGAGCCTGAACAGTTTCATGAGTGCTTCGTTAACTGGATGTCGTCAATACACACTCTTACCG
ATGGGCAAGTGATTGCGATTGATGGCAAAACGCTTCGCGGCTCATATAATCGTGAAGACAGGGCGAGCACCATTCATATGATTAGTGCTTATGCGTCGTC
CAACAAGCTCGTACTAGGACAGCTGAAAACCGAACAAAAAAGCAATGAAATTACAGCGATCCCTGAGTTGATAAAGATGCTCGACATCAAAGGAGCTCTA
GTAACCATTGATGCTATGGCCTGTCAAACTAAGATTGCTAAAGCCATTGTAGATCAAGGTGGAGACTATCTGCTTGCAGTAAAGAGCAACCAAGGAAAAC
TCCGACAAGCAATAGAAAAGGCATTCTCTTCTCAGCGAACCAATGTGGCAAATAACCTCTCTCTTGAGCAAGGACATGGCCGTATCGAGTCTCGCCAATG
CTATGTTTTTGACAGTACAAAACTTGAAGGTAACTTCTTTCGCTGGAAAGGCTTAAAGAGCATTGTAATGGTTGAAAATTTTCGCCTTGAGAAAGGAAAA
TCTGTCGACCTAGAGTACCGTTATTACATCAGCTCCAAAGCGCTTAGTGCAGAACAAGCTGCTATGGCAGTCAGAGAACATTGGGGCATAGAATCAATGC
ACTGGGTGCTTGATGTCACAATGAATGAAGATGCTTGCCAGATATACAAAGATCATGGTGCTGAGAATTTATCATGTTTGCGCCACATGAGCTTGAACAT
GCTCCGTGAAGAACCAACTAAGCTAAGCATAGTGGGGAAGCAAAAGCAATGTATGATGAATACGTCTATGCTAGAGGCAGTATTAAGTGCTGGCTTTAGT
CAGGTGGCGAAAAACTAGGCACTCATGCGGTCGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1122 bp373 aa971218+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MHIDHFKEHFQTIIDQRQGAKVTYCLFEVLFGSLCAVIAGAKGWFDIREYIRGHHDWFKRNNLFLNGIPADDTIARIISTIEPEQFHECFVNWMSSIHTL
TDGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQLKTEQKSNEITAIPELIKMLDIKGALVTIDAMACQTKIAKAIVDQGGDYLLAVKSNQG
KLRQAIEKAFSSQRTNVANNLSLEQGHGRIESRQCYVFDSTKLEGNFFRWKGLKSIVMVENFRLEKGKSVDLEYRYYISSKALSAEQAAMAVREHWGIES
MHWVLDVTMNEDACQIYKDHGAENLSCLRHMSLNMLREEPTKLSIVGKQKQCMMNTSMLEAVLSAGFSQVAKN

 

Blast result :
Comments
ISVha1 is 83% aa similar to ISSde9.
References
1] Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C., Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N., Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C., Tu,K.C., Irgon,J. and Wilson,R.K. (2007) Direct submission GanBank.