ISVha1
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009783 | ND | Vibrio harveyi | Vibrio harveyi ATCC BAA-1116 |
DNA section
IS Length : 1238 bp
Ends
IR Length : 11/16
IRL : CAGGGTGAGATCGTGAACGTTTTTTGAACAAAATCACGACCGATTTGACG
IRR : CAGGGCGACCGCATGAGTGCCTAGTTTTTCGCCACCTGACTAAAGCCAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGAGGCTCCTCACTTTA | GCTATCTTCT | TTTTCAAAGCTTCA | 10 |
DNA sequence
CAGGGTGAGATCGTGAACGTTTTTTGAACAAAATCACGACCGATTTGACGATCACATTTAGCTGTGATCATATACTCCCTTTTTAGGGAGAACATCATGC
ACATTGACCACTTTAAAGAACATTTTCAAACGATTATCGACCAACGCCAAGGTGCAAAGGTCACTTATTGCCTGTTTGAAGTCCTTTTTGGCTCGCTATG
TGCGGTGATTGCAGGTGCGAAAGGCTGGTTTGATATTCGTGAATATATTCGCGGTCATCATGATTGGTTTAAGCGTAATAATTTGTTTTTGAATGGTATT
CCTGCGGATGACACCATTGCTCGCATCATCTCTACCATTGAGCCTGAACAGTTTCATGAGTGCTTCGTTAACTGGATGTCGTCAATACACACTCTTACCG
ATGGGCAAGTGATTGCGATTGATGGCAAAACGCTTCGCGGCTCATATAATCGTGAAGACAGGGCGAGCACCATTCATATGATTAGTGCTTATGCGTCGTC
CAACAAGCTCGTACTAGGACAGCTGAAAACCGAACAAAAAAGCAATGAAATTACAGCGATCCCTGAGTTGATAAAGATGCTCGACATCAAAGGAGCTCTA
GTAACCATTGATGCTATGGCCTGTCAAACTAAGATTGCTAAAGCCATTGTAGATCAAGGTGGAGACTATCTGCTTGCAGTAAAGAGCAACCAAGGAAAAC
TCCGACAAGCAATAGAAAAGGCATTCTCTTCTCAGCGAACCAATGTGGCAAATAACCTCTCTCTTGAGCAAGGACATGGCCGTATCGAGTCTCGCCAATG
CTATGTTTTTGACAGTACAAAACTTGAAGGTAACTTCTTTCGCTGGAAAGGCTTAAAGAGCATTGTAATGGTTGAAAATTTTCGCCTTGAGAAAGGAAAA
TCTGTCGACCTAGAGTACCGTTATTACATCAGCTCCAAAGCGCTTAGTGCAGAACAAGCTGCTATGGCAGTCAGAGAACATTGGGGCATAGAATCAATGC
ACTGGGTGCTTGATGTCACAATGAATGAAGATGCTTGCCAGATATACAAAGATCATGGTGCTGAGAATTTATCATGTTTGCGCCACATGAGCTTGAACAT
GCTCCGTGAAGAACCAACTAAGCTAAGCATAGTGGGGAAGCAAAAGCAATGTATGATGAATACGTCTATGCTAGAGGCAGTATTAAGTGCTGGCTTTAGT
CAGGTGGCGAAAAACTAGGCACTCATGCGGTCGCCCTG
ACATTGACCACTTTAAAGAACATTTTCAAACGATTATCGACCAACGCCAAGGTGCAAAGGTCACTTATTGCCTGTTTGAAGTCCTTTTTGGCTCGCTATG
TGCGGTGATTGCAGGTGCGAAAGGCTGGTTTGATATTCGTGAATATATTCGCGGTCATCATGATTGGTTTAAGCGTAATAATTTGTTTTTGAATGGTATT
CCTGCGGATGACACCATTGCTCGCATCATCTCTACCATTGAGCCTGAACAGTTTCATGAGTGCTTCGTTAACTGGATGTCGTCAATACACACTCTTACCG
ATGGGCAAGTGATTGCGATTGATGGCAAAACGCTTCGCGGCTCATATAATCGTGAAGACAGGGCGAGCACCATTCATATGATTAGTGCTTATGCGTCGTC
CAACAAGCTCGTACTAGGACAGCTGAAAACCGAACAAAAAAGCAATGAAATTACAGCGATCCCTGAGTTGATAAAGATGCTCGACATCAAAGGAGCTCTA
GTAACCATTGATGCTATGGCCTGTCAAACTAAGATTGCTAAAGCCATTGTAGATCAAGGTGGAGACTATCTGCTTGCAGTAAAGAGCAACCAAGGAAAAC
TCCGACAAGCAATAGAAAAGGCATTCTCTTCTCAGCGAACCAATGTGGCAAATAACCTCTCTCTTGAGCAAGGACATGGCCGTATCGAGTCTCGCCAATG
CTATGTTTTTGACAGTACAAAACTTGAAGGTAACTTCTTTCGCTGGAAAGGCTTAAAGAGCATTGTAATGGTTGAAAATTTTCGCCTTGAGAAAGGAAAA
TCTGTCGACCTAGAGTACCGTTATTACATCAGCTCCAAAGCGCTTAGTGCAGAACAAGCTGCTATGGCAGTCAGAGAACATTGGGGCATAGAATCAATGC
ACTGGGTGCTTGATGTCACAATGAATGAAGATGCTTGCCAGATATACAAAGATCATGGTGCTGAGAATTTATCATGTTTGCGCCACATGAGCTTGAACAT
GCTCCGTGAAGAACCAACTAAGCTAAGCATAGTGGGGAAGCAAAAGCAATGTATGATGAATACGTCTATGCTAGAGGCAGTATTAAGTGCTGGCTTTAGT
CAGGTGGCGAAAAACTAGGCACTCATGCGGTCGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1122 bp | 373 aa | 97 | 1218 | + | No |
Chemistry : Unknow
ORF sequence :
MHIDHFKEHFQTIIDQRQGAKVTYCLFEVLFGSLCAVIAGAKGWFDIREYIRGHHDWFKRNNLFLNGIPADDTIARIISTIEPEQFHECFVNWMSSIHTL
TDGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQLKTEQKSNEITAIPELIKMLDIKGALVTIDAMACQTKIAKAIVDQGGDYLLAVKSNQG
KLRQAIEKAFSSQRTNVANNLSLEQGHGRIESRQCYVFDSTKLEGNFFRWKGLKSIVMVENFRLEKGKSVDLEYRYYISSKALSAEQAAMAVREHWGIES
MHWVLDVTMNEDACQIYKDHGAENLSCLRHMSLNMLREEPTKLSIVGKQKQCMMNTSMLEAVLSAGFSQVAKN
TDGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQLKTEQKSNEITAIPELIKMLDIKGALVTIDAMACQTKIAKAIVDQGGDYLLAVKSNQG
KLRQAIEKAFSSQRTNVANNLSLEQGHGRIESRQCYVFDSTKLEGNFFRWKGLKSIVMVENFRLEKGKSVDLEYRYYISSKALSAEQAAMAVREHWGIES
MHWVLDVTMNEDACQIYKDHGAENLSCLRHMSLNMLREEPTKLSIVGKQKQCMMNTSMLEAVLSAGFSQVAKN
Blast result :
Comments
ISVha1 is 83% aa similar to ISSde9.
References
1] Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C., Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N., Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C., Tu,K.C., Irgon,J. and Wilson,R.K. (2007) Direct submission GanBank.