ISKpn9

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ276453 ND Klebsiella pneumoniae
Klebsiella pneumoniae plasmid pLRB01
DNA section
IS Length : 1283 bp

Ends


IR Length : 14/16

IRL : CAGGGCCGACGCATGATCATTCTTTGCGCTAGTTGATCAAGTATCGATCA
IRR : CAGGGCTGACGCATCAGTGTTTATACTTTGAACAACCCCATACATTCGAA

Insertion site


Left flankDirect repeatRight flankDR Length
ATGAGCCCAGCATAGTCCCACGAGGTGGCATTACGGAATCCTCATGGGAAACCTGAG0

DNA sequence

CAGGGCCGACGCATGATCATTCTTTGCGCTAGTTGATCAAGTATCGATCAGTTGAGCGGCGCCAAGTACGATTTTAATTGTACCTTGCGTTGCCAAGCTG
TAAATAGTCGAGATCTTAACTAACTGTTTATTTTTATGGCCCAGAAGTCTTTGCTCGACTACCTTGAATCAATTCCAGACCCACGCAATCAGGCCAAGTG
CTCGCATATCTTGTCAGAGGTTGTTTTCATGGCCATCTGCGCCATGATGTGCGGTTTTGATACTTGGAGCGAGATTACCTTGTTTGCTCAAGAGCGAGAG
CCATGGTTCCGGCGCTGGTTGAGCTTGCCTGGTGGCATTCCATCACACGACACATTCAACCGCATTTTTGCCACTCTGCCTCCCGCCAGTCTGAAATCCA
TTTTTCAAGCGTGGATCGGCGACATCATGGGCGATGATAAGCTGGTTGGCCAACTAGCGGTTGATGGTAAAGCTCTTCGTGCTACCGCTAAAGGGCGAGG
TGCCAACGCTGTTCATATGGTCAATGTCTGGTCAACTGAGCTGGGGATGTGTGTTGGCCAGCAAAAAGTCGCTGACAAATCTAACGAGATCACGGCAATA
CCTGAGCTACTCCAACTTCTTGAATTAAAAGGGTGTTTAGTCAGTATTGATGCGATGGGTACACAGGTAAAAATCGCCGACACCATCCTCAAAAAGTCGG
GTGATTACCTGCTTGCAGTGAAAGACAACCAACCTAGCCTCAATACTGAAGTAAAAGAACAGTTCCAAGCGTATTGGGATAAGAATGAAACCGATGTTTC
GGGGCACGGCTTTACTGAACAATTTGACTCAGAACATGGGCGAAAAGAGCATCGACGTTGTTGGGTTCTGATGGTTGATGAAAGCATGCCAGTTTGCCAG
CAGTGGAAAGCGAAGACGATCATAGCCGTGCAGGCTGAGCGAATTGAAAATGGCAAAGGCTATGATTTCGTGAGATTTTATATAAGTAGCCGAGCGTTGG
ATGCCACCTCAGCGCTGAAGGCAACCCGAGCGCACTGGTCGGTAGAAAATCTGCTGCACTGGACTTTAGATATTGCGTTCGGAGAGGATCAACTTCAGGC
CAGAGCGGGCTTCGCTGGGGAAAACTTAGCGGTCATCAGGCAGTGGATACTGAACATGCTGAAGCAAAACAAATCACGTAATCTAAGCATGGCCAACAAG
CGCAGGCTCTGCTGTCTGAATGAACAATATTTGTTCGAATGTATGGGGTTGTTCAAAGTATAAACACTGATGCGTCAGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1128 bp375 aa1361263+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MAQKSLLDYLESIPDPRNQAKCSHILSEVVFMAICAMMCGFDTWSEITLFAQEREPWFRRWLSLPGGIPSHDTFNRIFATLPPASLKSIFQAWIGDIMGD
DKLVGQLAVDGKALRATAKGRGANAVHMVNVWSTELGMCVGQQKVADKSNEITAIPELLQLLELKGCLVSIDAMGTQVKIADTILKKSGDYLLAVKDNQP
SLNTEVKEQFQAYWDKNETDVSGHGFTEQFDSEHGRKEHRRCWVLMVDESMPVCQQWKAKTIIAVQAERIENGKGYDFVRFYISSRALDATSALKATRAH
WSVENLLHWTLDIAFGEDQLQARAGFAGENLAVIRQWILNMLKQNKSRNLSMANKRRLCCLNEQYLFECMGLFKV

 

Blast result :
Comments
ISKpn9 is 57% aa similar to ISAzo8.
References
1] Raskine,L., Borrel,I., Sanson Le Pors,M. and Arlet,G.(2000) Direct submission GenBank.