ISPlu17
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005126 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. laumondii TTO1 |
DNA section
IS Length : 1244 bp
Ends
IR Length : 16/23
IRL : CAGGGCAAGATCGTGAATATTTTGTTAAAAAAATCAGATTTGACCGACGG
IRR : CTAGGGCAACCGCATGAATGATTAAATATCACTCACATTAGCAAAACCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATCAGTCGGCATCTATCG | GGGAATATGAACTGGG | 0 |
DNA sequence
CAGGGCAAGATCGTGAATATTTTGTTAAAAAAATCAGATTTGACCGACGGTAATAGTTATGATCTCATACTCTCTTTTTGAGAGCAAAAACCCTGTGCTT
TGATATTTTTACTGAACATTTCTCAGACATTCAAGATCCCCGTCAAAGCGCCAAAGTTGCCTACCCTTTATTCGATATTTTATTTGCCTCATTGTGCGCT
GTTCTGGGCGGCGCCGATGGTTGGAGTGAGATCCAAGAGTATATTGAAGGCCACCATGAATGGTTTCTTGAACATAATATGTTCAAGGAGGGGATCCCTG
TTGATGACACGATTGCCCGACTTCTCTCACGGATTAATCCGGAACAATTTAATCTTTGTTTTATCAACTGGATGCGTTCGGTTCATCAGGTCACTCAGGG
GGAATTAGTGGCGATTGATGGTAAAGTTTTACGGGGTGCCTATGCCCCGGGAGAACGCGGTTCGGCTCTCCACCTTGTGAGTGCTTATGCGACAGCCAAT
AAAATGGTCATCGGCCAGGTTAAAACCCAGAAAAAATCTAATGAAATTACCGCAATCCCGGAACTCATTAAGTTGTTGGAACTGAAAGGCGCGCTGATTT
CCATTGATGCGATGGGATGCCAAACGCAGATCGCTCAGGAGATTATTGATGCCGGCGCGGATTATTTATTAAGTGTGAAAGACAACCAAAAACGTCTCCA
TCGTGCCATTCAAAAAGCCCTGGAAGCCCAGCGCGTTTTGCCCTTAACACCCGAAAAAGCGCGGATAGAACAGGGTCATGGTCGTCTGGAAATCAGAGAA
AGCCATGTGCTGAATGCCGAGACATTCAAAGCCGATTTTCCGGAATGGGCGGGATTAAAAACCCTGGGTGTCACAATCGGATACAGGCAAGAAAACGGCA
AATTGCCCAGTCTGGAGTACCGTTACTACATCAGTTCAGCCAGACTGACAGAAGAACAATTTTCTCAGGCAGTACGCAGCCATTGGCAAATAGAGAATAA
TCTTCACTGGGTGCTTGATGTGACGTTTAAGGAAGATGATTGTCAAATTTACCGTGAAAATGCGGCGGAAAACATCGCGATATTACGACGTATTTCGTTA
AACATGCTGAAAAAAGAAACGAGTCAATTAAGCATCAAAGCGAAGCGTAGACGAATATGGATGAAAACCCAATTTTTGGAGCGAGTATTACAGGCGGGTT
TTGCTAATGTGAGTGATATTTAATCATTCATGCGGTTGCCCTAG
TGATATTTTTACTGAACATTTCTCAGACATTCAAGATCCCCGTCAAAGCGCCAAAGTTGCCTACCCTTTATTCGATATTTTATTTGCCTCATTGTGCGCT
GTTCTGGGCGGCGCCGATGGTTGGAGTGAGATCCAAGAGTATATTGAAGGCCACCATGAATGGTTTCTTGAACATAATATGTTCAAGGAGGGGATCCCTG
TTGATGACACGATTGCCCGACTTCTCTCACGGATTAATCCGGAACAATTTAATCTTTGTTTTATCAACTGGATGCGTTCGGTTCATCAGGTCACTCAGGG
GGAATTAGTGGCGATTGATGGTAAAGTTTTACGGGGTGCCTATGCCCCGGGAGAACGCGGTTCGGCTCTCCACCTTGTGAGTGCTTATGCGACAGCCAAT
AAAATGGTCATCGGCCAGGTTAAAACCCAGAAAAAATCTAATGAAATTACCGCAATCCCGGAACTCATTAAGTTGTTGGAACTGAAAGGCGCGCTGATTT
CCATTGATGCGATGGGATGCCAAACGCAGATCGCTCAGGAGATTATTGATGCCGGCGCGGATTATTTATTAAGTGTGAAAGACAACCAAAAACGTCTCCA
TCGTGCCATTCAAAAAGCCCTGGAAGCCCAGCGCGTTTTGCCCTTAACACCCGAAAAAGCGCGGATAGAACAGGGTCATGGTCGTCTGGAAATCAGAGAA
AGCCATGTGCTGAATGCCGAGACATTCAAAGCCGATTTTCCGGAATGGGCGGGATTAAAAACCCTGGGTGTCACAATCGGATACAGGCAAGAAAACGGCA
AATTGCCCAGTCTGGAGTACCGTTACTACATCAGTTCAGCCAGACTGACAGAAGAACAATTTTCTCAGGCAGTACGCAGCCATTGGCAAATAGAGAATAA
TCTTCACTGGGTGCTTGATGTGACGTTTAAGGAAGATGATTGTCAAATTTACCGTGAAAATGCGGCGGAAAACATCGCGATATTACGACGTATTTCGTTA
AACATGCTGAAAAAAGAAACGAGTCAATTAAGCATCAAAGCGAAGCGTAGACGAATATGGATGAAAACCCAATTTTTGGAGCGAGTATTACAGGCGGGTT
TTGCTAATGTGAGTGATATTTAATCATTCATGCGGTTGCCCTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1131 bp | 376 aa | 93 | 1223 | + | No |
Chemistry : Unknow
ORF sequence :
MCFDIFTEHFSDIQDPRQSAKVAYPLFDILFASLCAVLGGADGWSEIQEYIEGHHEWFLEHNMFKEGIPVDDTIARLLSRINPEQFNLCFINWMRSVHQV
TQGELVAIDGKVLRGAYAPGERGSALHLVSAYATANKMVIGQVKTQKKSNEITAIPELIKLLELKGALISIDAMGCQTQIAQEIIDAGADYLLSVKDNQK
RLHRAIQKALEAQRVLPLTPEKARIEQGHGRLEIRESHVLNAETFKADFPEWAGLKTLGVTIGYRQENGKLPSLEYRYYISSARLTEEQFSQAVRSHWQI
ENNLHWVLDVTFKEDDCQIYRENAAENIAILRRISLNMLKKETSQLSIKAKRRRIWMKTQFLERVLQAGFANVSDI
TQGELVAIDGKVLRGAYAPGERGSALHLVSAYATANKMVIGQVKTQKKSNEITAIPELIKLLELKGALISIDAMGCQTQIAQEIIDAGADYLLSVKDNQK
RLHRAIQKALEAQRVLPLTPEKARIEQGHGRLEIRESHVLNAETFKADFPEWAGLKTLGVTIGYRQENGKLPSLEYRYYISSARLTEEQFSQAVRSHWQI
ENNLHWVLDVTFKEDDCQIYRENAAENIAILRRISLNMLKKETSQLSIKAKRRRIWMKTQFLERVLQAGFANVSDI
Blast result :
Comments
ISPlu17 is 73% aa similar to ISSod22.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Givaudan,A., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Charles,J.F., Dassa,E., Derose,R., Derzelle,S., Freyssinet,G., Gaudriault,S., Medigue,C., Lanois,A., Powell,K., Siguier,P., Vincent,R., Wingate,V., Zouine,M., Glaser,P., Boemare,N., Danchin,A. and Kunst,F. (2003) Nat. Biotechnol. 21 (11), 1307-1313