ISPlu17

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 1244 bp

Ends


IR Length : 16/23

IRL : CAGGGCAAGATCGTGAATATTTTGTTAAAAAAATCAGATTTGACCGACGG
IRR : CTAGGGCAACCGCATGAATGATTAAATATCACTCACATTAGCAAAACCCG

Insertion site


Left flankDirect repeatRight flankDR Length
TTATCAGTCGGCATCTATCGGGGAATATGAACTGGG0

DNA sequence

CAGGGCAAGATCGTGAATATTTTGTTAAAAAAATCAGATTTGACCGACGGTAATAGTTATGATCTCATACTCTCTTTTTGAGAGCAAAAACCCTGTGCTT
TGATATTTTTACTGAACATTTCTCAGACATTCAAGATCCCCGTCAAAGCGCCAAAGTTGCCTACCCTTTATTCGATATTTTATTTGCCTCATTGTGCGCT
GTTCTGGGCGGCGCCGATGGTTGGAGTGAGATCCAAGAGTATATTGAAGGCCACCATGAATGGTTTCTTGAACATAATATGTTCAAGGAGGGGATCCCTG
TTGATGACACGATTGCCCGACTTCTCTCACGGATTAATCCGGAACAATTTAATCTTTGTTTTATCAACTGGATGCGTTCGGTTCATCAGGTCACTCAGGG
GGAATTAGTGGCGATTGATGGTAAAGTTTTACGGGGTGCCTATGCCCCGGGAGAACGCGGTTCGGCTCTCCACCTTGTGAGTGCTTATGCGACAGCCAAT
AAAATGGTCATCGGCCAGGTTAAAACCCAGAAAAAATCTAATGAAATTACCGCAATCCCGGAACTCATTAAGTTGTTGGAACTGAAAGGCGCGCTGATTT
CCATTGATGCGATGGGATGCCAAACGCAGATCGCTCAGGAGATTATTGATGCCGGCGCGGATTATTTATTAAGTGTGAAAGACAACCAAAAACGTCTCCA
TCGTGCCATTCAAAAAGCCCTGGAAGCCCAGCGCGTTTTGCCCTTAACACCCGAAAAAGCGCGGATAGAACAGGGTCATGGTCGTCTGGAAATCAGAGAA
AGCCATGTGCTGAATGCCGAGACATTCAAAGCCGATTTTCCGGAATGGGCGGGATTAAAAACCCTGGGTGTCACAATCGGATACAGGCAAGAAAACGGCA
AATTGCCCAGTCTGGAGTACCGTTACTACATCAGTTCAGCCAGACTGACAGAAGAACAATTTTCTCAGGCAGTACGCAGCCATTGGCAAATAGAGAATAA
TCTTCACTGGGTGCTTGATGTGACGTTTAAGGAAGATGATTGTCAAATTTACCGTGAAAATGCGGCGGAAAACATCGCGATATTACGACGTATTTCGTTA
AACATGCTGAAAAAAGAAACGAGTCAATTAAGCATCAAAGCGAAGCGTAGACGAATATGGATGAAAACCCAATTTTTGGAGCGAGTATTACAGGCGGGTT
TTGCTAATGTGAGTGATATTTAATCATTCATGCGGTTGCCCTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1131 bp376 aa931223+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MCFDIFTEHFSDIQDPRQSAKVAYPLFDILFASLCAVLGGADGWSEIQEYIEGHHEWFLEHNMFKEGIPVDDTIARLLSRINPEQFNLCFINWMRSVHQV
TQGELVAIDGKVLRGAYAPGERGSALHLVSAYATANKMVIGQVKTQKKSNEITAIPELIKLLELKGALISIDAMGCQTQIAQEIIDAGADYLLSVKDNQK
RLHRAIQKALEAQRVLPLTPEKARIEQGHGRLEIRESHVLNAETFKADFPEWAGLKTLGVTIGYRQENGKLPSLEYRYYISSARLTEEQFSQAVRSHWQI
ENNLHWVLDVTFKEDDCQIYRENAAENIAILRRISLNMLKKETSQLSIKAKRRRIWMKTQFLERVLQAGFANVSDI

 

Blast result :
Comments
ISPlu17 is 73% aa similar to ISSod22.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Givaudan,A., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Charles,J.F., Dassa,E., Derose,R., Derzelle,S., Freyssinet,G., Gaudriault,S., Medigue,C., Lanois,A., Powell,K., Siguier,P., Vincent,R., Wingate,V., Zouine,M., Glaser,P., Boemare,N., Danchin,A. and Kunst,F. (2003) Nat. Biotechnol. 21 (11), 1307-1313