ISMno1
- Family ISAs1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABIP01000013 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 1218 bp
Ends
IR Length : 22/26
IRL : CAGGGTTCACGCATGATCTCGGGTTGGGCTGTGATTGAGGCTCGTGCTGG
IRR : CAGGGTTCACGCATGAGCCTGGTTTGCGATGATCTGGAGCATGTAGTCAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTTTTCCGGACATTT | GATTTCCTGA | CAGGGTCTCCTGACACA | 10 |
DNA sequence
CAGGGTTCACGCATGATCTCGGGTTGGGCTGTGATTGAGGCTCGTGCTGGCCATTTCCCGCTCCGTGCAACAGGGGACGAGCGGCATGATCGAAGGTTTG
GCGGCCTGCTTCCCAGGGCTTGAGGATCCACGCGAGACCAGCCGGTGCGACCACCTGCTCATCGACATCCTGGTGATCGCGGTGTGCGCCGTGTCGCCTG
CGCCGAGAGCTGGGAGGACATTGAGCTCTACGGACGCAGCAAGCAGGCATGGCTGCAGACTTTCTTGACCCTGCCGAACGGGATCCCCTCCCACGACACC
TTCCGGCGGGTCTTCATGCTGCTCGACGCGGATGCATTCGAGCGCTGCTTCACCCGATGCGTGCAGTTCCGGGCCGGTGGGATCGCGCGCGAGGTGGTGG
CGGTGGATGGCAAGTCGGTCCGCCGCTCGGCCAGCCACCGCCATGAGCATGGGCCGCTGCACCTGGTCAGCACCTGGGCGAGCCGGCGAGGGCTGGCTCT
CGGCCAACGCGCGCTCGACGGGAAGTCGAACGAGATCAGGGCGATCCCGGAGCTACTCGAGACCCTGCAGCTCGACGGCTGCATCGTGACGCTCGATGCG
ATGGGCTGCCAGACGAGCATCGCCGAGCGGATCCGCGCCAAGGGCGCCGACGATCTCCTGGTGCTCAAAGCCAATCACGGCGGCGCTTATCGCGCCGTGC
GCATGCATTTCGAGCGCACCTGCTTGGGCTCGGGAGCTGCTGGTCGCCCGGTGTTCGACGCCTTCGAAGGTCACGGCCGGTTGGTACGCCGGCGCGTCTT
CGTGGACGCCGCGGCCACGGCGCTCGCGCCGTTGAGCGGCTGGCCCGACCTGAGCAGGGTGCTGGCGGTGGAGACGCTCCGCGGGATTCCTGGCACCGGC
ACGGTGGTGGCCGACATTCGCTACTTCCTGACCAGCTGCAGGGACGATCCCTCCGTCCTGGTCGGCGTGATCCGTCGGCACTGGAGCGTGGAGAACGCGC
TGCACTGGGTGCTCGAGGTCAGCTTCCGCGAGGATGACAGCCGCGTTCGTGACCGGACCGCCGCGCGCAACTTCGCCCTCGTGCGCAAGATCGCCCTGAA
CCTGATCGCCCAGGACCGGAGCACGCAGGCCAGCCTACGCGGTAGGCGCAAGAAAGCTGCTTGGGACGATGACTACATGCTCCAGATCATCGCAAACCAG
GCTCATGCGTGAACCCTG
GCGGCCTGCTTCCCAGGGCTTGAGGATCCACGCGAGACCAGCCGGTGCGACCACCTGCTCATCGACATCCTGGTGATCGCGGTGTGCGCCGTGTCGCCTG
CGCCGAGAGCTGGGAGGACATTGAGCTCTACGGACGCAGCAAGCAGGCATGGCTGCAGACTTTCTTGACCCTGCCGAACGGGATCCCCTCCCACGACACC
TTCCGGCGGGTCTTCATGCTGCTCGACGCGGATGCATTCGAGCGCTGCTTCACCCGATGCGTGCAGTTCCGGGCCGGTGGGATCGCGCGCGAGGTGGTGG
CGGTGGATGGCAAGTCGGTCCGCCGCTCGGCCAGCCACCGCCATGAGCATGGGCCGCTGCACCTGGTCAGCACCTGGGCGAGCCGGCGAGGGCTGGCTCT
CGGCCAACGCGCGCTCGACGGGAAGTCGAACGAGATCAGGGCGATCCCGGAGCTACTCGAGACCCTGCAGCTCGACGGCTGCATCGTGACGCTCGATGCG
ATGGGCTGCCAGACGAGCATCGCCGAGCGGATCCGCGCCAAGGGCGCCGACGATCTCCTGGTGCTCAAAGCCAATCACGGCGGCGCTTATCGCGCCGTGC
GCATGCATTTCGAGCGCACCTGCTTGGGCTCGGGAGCTGCTGGTCGCCCGGTGTTCGACGCCTTCGAAGGTCACGGCCGGTTGGTACGCCGGCGCGTCTT
CGTGGACGCCGCGGCCACGGCGCTCGCGCCGTTGAGCGGCTGGCCCGACCTGAGCAGGGTGCTGGCGGTGGAGACGCTCCGCGGGATTCCTGGCACCGGC
ACGGTGGTGGCCGACATTCGCTACTTCCTGACCAGCTGCAGGGACGATCCCTCCGTCCTGGTCGGCGTGATCCGTCGGCACTGGAGCGTGGAGAACGCGC
TGCACTGGGTGCTCGAGGTCAGCTTCCGCGAGGATGACAGCCGCGTTCGTGACCGGACCGCCGCGCGCAACTTCGCCCTCGTGCGCAAGATCGCCCTGAA
CCTGATCGCCCAGGACCGGAGCACGCAGGCCAGCCTACGCGGTAGGCGCAAGAAAGCTGCTTGGGACGATGACTACATGCTCCAGATCATCGCAAACCAG
GCTCATGCGTGAACCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1029 bp | 342 aa | 184 | 1212 | + | No |
Chemistry : Unknow
ORF sequence :
MRRVACAESWEDIELYGRSKQAWLQTFLTLPNGIPSHDTFRRVFMLLDADAFERCFTRCVQFRAGGIAREVVAVDGKSVRRSASHRHEHGPLHLVSTWAS
RRGLALGQRALDGKSNEIRAIPELLETLQLDGCIVTLDAMGCQTSIAERIRAKGADDLLVLKANHGGAYRAVRMHFERTCLGSGAAGRPVFDAFEGHGRL
VRRRVFVDAAATALAPLSGWPDLSRVLAVETLRGIPGTGTVVADIRYFLTSCRDDPSVLVGVIRRHWSVENALHWVLEVSFREDDSRVRDRTAARNFALV
RKIALNLIAQDRSTQASLRGRRKKAAWDDDYMLQIIANQAHA
RRGLALGQRALDGKSNEIRAIPELLETLQLDGCIVTLDAMGCQTSIAERIRAKGADDLLVLKANHGGAYRAVRMHFERTCLGSGAAGRPVFDAFEGHGRL
VRRRVFVDAAATALAPLSGWPDLSRVLAVETLRGIPGTGTVVADIRYFLTSCRDDPSVLVGVIRRHWSVENALHWVLEVSFREDDSRVRDRTAARNFALV
RKIALNLIAQDRSTQASLRGRRKKAAWDDDYMLQIIANQAHA
Blast result :
Comments
ISMno1 is 58% aa similar to ISAzo3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Marx,C.J. and Richardson,P. (2007) Direct submission GenBank.