ISPpr10
- Family ISAs1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAPH01000036 | ND | Photobacterium profundum | Photobacterium profundum 3TCK |
DNA section
IS Length : 1307 bp
Ends
IR Length : 17/22
IRL : CAGGGCAAGATCATGAAGAACCCTTATTATGAAAGGGCTCAGCCGCTGTT
IRR : CAGGGCTAGATTACGAAGCTCCTTGCCCCATAAGGACTCCAGATAGGTAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
CAGGGCAAGATCATGAAGAACCCTTATTATGAAAGGGCTCAGCCGCTGTTGAAATTTAATTAAAACTACCGTTTACTGCACAAAACTGCAATCCCAATTA
GGATCAATTTGACGATCTATACCAGCTGTGATCATATACTTATCTTTCGGTATATGGATATCATTCATGAACGGACTTAGCCTTTTGGATCATATTTCAA
TAATCAAAGACCCACGGCAACAGTGGAAAATAGAACACAAATTGACAGACATTATATTTTTGTCGATTGTCGCTGTTATTGGTGGTGCTGATGGTTGGGA
AGAAATACAAGATTTTGGTGAAGACCACCTTGGTTGGCTCAAGCAATATGGTGATTTTGAGAGTGGCATTCCCGTCCATGACACTATTGCTAGAGTGATG
GGGATGATATCAGCCAAACAGATGCAAAAGTGCTTTGCTCTGTGGATGGATGACTGTCACCAAGCGACTGACGGTGATGTCATTGCGATTGATGGTAAAA
CTCTGCGTGGCACTTATGACAAAGGAAGGCGTCAAGGCGCAATCCACATGGTGAGTGCTTTTAGTGCTGCAAATCAAGTGGTTATTGGGCAGGTCAAAAC
ATCAGAGAAATCGAATGAAATCACTGCTATACCTGAGCTTCTGAAGCTACTCGACATACGTGGATGCCTTGTCACTATTGATGCGATGGGCTGTCAGCGT
GATATAGCTAAGGCCATAGTTGGCAAAGGTGCAGATTATTTATTGGCGGTAAAAGGTAATCAAAAGCGCTTAGAGAAAGCCTTTAATGACTACTTTAGGA
TGGAGATGCTGCAAAACTTCGAAGGAAGCTCATACAGTACTCAGGAAGAAGGGCATGGTCGTAAAGAAACCCGCGTAGCGTTAATTAATGAAGATTTATC
GGTACTGGGTGATATTGCTTATGATTGGCCAGAATTAAAAGTAATGGGTATCGTTGCATCTATTAGGCAAGTTGGAGATATTCCCGCAGAGGACATATCG
ATTCGATATTACATTAGCTCTAAGAAACTAGATGCAAAAACGTTGCTTGAATCCAGCCGCTCACATTGGTCGATTGAAGTTCAATTGCATTGGAAACTGG
ATGTTGGCATGAATGAAGATGCATGCAGAATAAGGCGAGATGAAGCGGGTGAAAACTTTGCTGCAATTCGTCATATTGCATTAAATCTATTAAATGCAGA
TAAAACCTTTAAAGCGGGTTTAAAAAGAAAGCGAACACGGGCAGGTAGAAATAATAGCTACCTATCTGGAGTCCTTATGGGGCAAGGAGCTTCGTAATCT
AGCCCTG
GGATCAATTTGACGATCTATACCAGCTGTGATCATATACTTATCTTTCGGTATATGGATATCATTCATGAACGGACTTAGCCTTTTGGATCATATTTCAA
TAATCAAAGACCCACGGCAACAGTGGAAAATAGAACACAAATTGACAGACATTATATTTTTGTCGATTGTCGCTGTTATTGGTGGTGCTGATGGTTGGGA
AGAAATACAAGATTTTGGTGAAGACCACCTTGGTTGGCTCAAGCAATATGGTGATTTTGAGAGTGGCATTCCCGTCCATGACACTATTGCTAGAGTGATG
GGGATGATATCAGCCAAACAGATGCAAAAGTGCTTTGCTCTGTGGATGGATGACTGTCACCAAGCGACTGACGGTGATGTCATTGCGATTGATGGTAAAA
CTCTGCGTGGCACTTATGACAAAGGAAGGCGTCAAGGCGCAATCCACATGGTGAGTGCTTTTAGTGCTGCAAATCAAGTGGTTATTGGGCAGGTCAAAAC
ATCAGAGAAATCGAATGAAATCACTGCTATACCTGAGCTTCTGAAGCTACTCGACATACGTGGATGCCTTGTCACTATTGATGCGATGGGCTGTCAGCGT
GATATAGCTAAGGCCATAGTTGGCAAAGGTGCAGATTATTTATTGGCGGTAAAAGGTAATCAAAAGCGCTTAGAGAAAGCCTTTAATGACTACTTTAGGA
TGGAGATGCTGCAAAACTTCGAAGGAAGCTCATACAGTACTCAGGAAGAAGGGCATGGTCGTAAAGAAACCCGCGTAGCGTTAATTAATGAAGATTTATC
GGTACTGGGTGATATTGCTTATGATTGGCCAGAATTAAAAGTAATGGGTATCGTTGCATCTATTAGGCAAGTTGGAGATATTCCCGCAGAGGACATATCG
ATTCGATATTACATTAGCTCTAAGAAACTAGATGCAAAAACGTTGCTTGAATCCAGCCGCTCACATTGGTCGATTGAAGTTCAATTGCATTGGAAACTGG
ATGTTGGCATGAATGAAGATGCATGCAGAATAAGGCGAGATGAAGCGGGTGAAAACTTTGCTGCAATTCGTCATATTGCATTAAATCTATTAAATGCAGA
TAAAACCTTTAAAGCGGGTTTAAAAAGAAAGCGAACACGGGCAGGTAGAAATAATAGCTACCTATCTGGAGTCCTTATGGGGCAAGGAGCTTCGTAATCT
AGCCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1131 bp | 376 aa | 167 | 1297 | + | No |
Chemistry : Unknow
ORF sequence :
MNGLSLLDHISIIKDPRQQWKIEHKLTDIIFLSIVAVIGGADGWEEIQDFGEDHLGWLKQYGDFESGIPVHDTIARVMGMISAKQMQKCFALWMDDCHQA
TDGDVIAIDGKTLRGTYDKGRRQGAIHMVSAFSAANQVVIGQVKTSEKSNEITAIPELLKLLDIRGCLVTIDAMGCQRDIAKAIVGKGADYLLAVKGNQK
RLEKAFNDYFRMEMLQNFEGSSYSTQEEGHGRKETRVALINEDLSVLGDIAYDWPELKVMGIVASIRQVGDIPAEDISIRYYISSKKLDAKTLLESSRSH
WSIEVQLHWKLDVGMNEDACRIRRDEAGENFAAIRHIALNLLNADKTFKAGLKRKRTRAGRNNSYLSGVLMGQGAS
TDGDVIAIDGKTLRGTYDKGRRQGAIHMVSAFSAANQVVIGQVKTSEKSNEITAIPELLKLLDIRGCLVTIDAMGCQRDIAKAIVGKGADYLLAVKGNQK
RLEKAFNDYFRMEMLQNFEGSSYSTQEEGHGRKETRVALINEDLSVLGDIAYDWPELKVMGIVASIRQVGDIPAEDISIRYYISSKKLDAKTLLESSRSH
WSIEVQLHWKLDVGMNEDACRIRRDEAGENFAAIRHIALNLLNADKTFKAGLKRKRTRAGRNNSYLSGVLMGQGAS
Blast result :
Comments
ISPpr10 is 76% aa similar to IS1358.
References
1] Bartlett,D., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Diret submission GenBank.