ISBthe4
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004663 | ND | Bacteroides thetaiotaomicron | Bacteroides thetaiotaomicron VPI-5482 |
DNA section
IS Length : 1353 bp
Ends
IR Length : 18/19
IRL : CAGGGGAAAACGCATTATACTTTTTCTTTTATCTTTTATACATTTATCTT
IRR : CAGGGAAAACGCATTATAAATCATGTAAAATAAGTTCCCATAAGAATTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACGATGAAGATGT | CGGTTAGATA | ATACACAAACTTT | 10 |
DNA sequence
CAGGGGAAAACGCATTATACTTTTTCTTTTATCTTTTATACATTTATCTTACATGAATATCGGCTTTTCATCTTATTAATAAGATATTTATCTTTCATTT
ACAATATTATTTAAGTACATTTACGTGATTATAAATCACAATTAAAATGAAGCAAGAAACTAAAAGAAGGATTGAGATCAGCAACCTACATGAATTTGCT
GATTCATTAATATTGATAGATAACCGGATAGAGCGTTGTAAAAAGCATCAGGCCAGTACCATTGTTCTTATTGCCATTTCTGCTGTTATATGTGGCGCTG
ATACTTGGAATTCAATAGAAGACTTTGGTAAAAGTAAAGAATCTTTTTTTGCAGCCAAGCTTTCCAATTTTAATGGCATCCCTTCTCATGATACATTTAA
TCGCTTTTTCTCGGCATTAGATCCTTTAAAATTTGAAGAATCTTATAGACAATGGGTCCAAAGCATTCTCAAATGTTATTCGGGTCATATAGCCATTGAT
GGTAAAACCATACGAGGAGCCTATGAATCCGAAGAGGACAAGCGTCGTCGTAAACAAGGAGTACTTCCTGATTCGAATACGGGAAAATACAAATTGCATG
TTATTAGTGCATTTGCAACAGAACTGGGAATCTCCCTTGGACAGTTATGCACACAAGAAAAGGAAAATGAGATAGTTGTCATTCCTGAATTATTAGATAT
GTTGTGTATAAAAGATTGTATTATTACAATTGACGCTTTAGGATGCCAGCGTACAATTGCAGAGAAAGTCATAAAGGGAGAAGGTGACTACATTTTTATA
GTGAAAGATAATCAACCGAAATTAAAGGAAACAGTACTGTCAGCAACAGAAAGTATTGTATCAAAAGGTACAACAGTACGATTTGACAAATATGAGACGC
ATGAGGAAGGACATGGCAGGAATGAGTCGAGAATCTGCTATTGCTGCAACGATCCCGGTTTTCTGGGAGCAGATATTAGAAAGAAGTGGAAAAATATACG
GTCTTTTGGATATATTGAGAATACCAGAAATACAAACAAAGGCACTACAGTGGAAAAAAGATGTTTTATATCTTCCTTGGAACCTGATGCGCAGAAGATA
CTTAAAAATAGTAGAGAACACTGGGAAATTGAGAATAATCTACATTGGCAGTTGGATGTCAATTTCCATGAAGACAATACCAGAAGAAGAAATATATCAG
CATTAAACTTCTCCGTACTGGCGAAAATTGCATTGGCCACATTGAGAAACAACAAAAGAGAGATACCAATCAATAGAAAAAGATTAATAGCAGGGTGGGA
TAATGAATTCTTATGGGAACTTATTTTACATGATTTATAATGCGTTTTCCCTG
ACAATATTATTTAAGTACATTTACGTGATTATAAATCACAATTAAAATGAAGCAAGAAACTAAAAGAAGGATTGAGATCAGCAACCTACATGAATTTGCT
GATTCATTAATATTGATAGATAACCGGATAGAGCGTTGTAAAAAGCATCAGGCCAGTACCATTGTTCTTATTGCCATTTCTGCTGTTATATGTGGCGCTG
ATACTTGGAATTCAATAGAAGACTTTGGTAAAAGTAAAGAATCTTTTTTTGCAGCCAAGCTTTCCAATTTTAATGGCATCCCTTCTCATGATACATTTAA
TCGCTTTTTCTCGGCATTAGATCCTTTAAAATTTGAAGAATCTTATAGACAATGGGTCCAAAGCATTCTCAAATGTTATTCGGGTCATATAGCCATTGAT
GGTAAAACCATACGAGGAGCCTATGAATCCGAAGAGGACAAGCGTCGTCGTAAACAAGGAGTACTTCCTGATTCGAATACGGGAAAATACAAATTGCATG
TTATTAGTGCATTTGCAACAGAACTGGGAATCTCCCTTGGACAGTTATGCACACAAGAAAAGGAAAATGAGATAGTTGTCATTCCTGAATTATTAGATAT
GTTGTGTATAAAAGATTGTATTATTACAATTGACGCTTTAGGATGCCAGCGTACAATTGCAGAGAAAGTCATAAAGGGAGAAGGTGACTACATTTTTATA
GTGAAAGATAATCAACCGAAATTAAAGGAAACAGTACTGTCAGCAACAGAAAGTATTGTATCAAAAGGTACAACAGTACGATTTGACAAATATGAGACGC
ATGAGGAAGGACATGGCAGGAATGAGTCGAGAATCTGCTATTGCTGCAACGATCCCGGTTTTCTGGGAGCAGATATTAGAAAGAAGTGGAAAAATATACG
GTCTTTTGGATATATTGAGAATACCAGAAATACAAACAAAGGCACTACAGTGGAAAAAAGATGTTTTATATCTTCCTTGGAACCTGATGCGCAGAAGATA
CTTAAAAATAGTAGAGAACACTGGGAAATTGAGAATAATCTACATTGGCAGTTGGATGTCAATTTCCATGAAGACAATACCAGAAGAAGAAATATATCAG
CATTAAACTTCTCCGTACTGGCGAAAATTGCATTGGCCACATTGAGAAACAACAAAAGAGAGATACCAATCAATAGAAAAAGATTAATAGCAGGGTGGGA
TAATGAATTCTTATGGGAACTTATTTTACATGATTTATAATGCGTTTTCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1194 bp | 397 aa | 147 | 1340 | + | No |
Chemistry : Unknow
ORF sequence :
MKQETKRRIEISNLHEFADSLILIDNRIERCKKHQASTIVLIAISAVICGADTWNSIEDFGKSKESFFAAKLSNFNGIPSHDTFNRFFSALDPLKFEESY
RQWVQSILKCYSGHIAIDGKTIRGAYESEEDKRRRKQGVLPDSNTGKYKLHVISAFATELGISLGQLCTQEKENEIVVIPELLDMLCIKDCIITIDALGC
QRTIAEKVIKGEGDYIFIVKDNQPKLKETVLSATESIVSKGTTVRFDKYETHEEGHGRNESRICYCCNDPGFLGADIRKKWKNIRSFGYIENTRNTNKGT
TVEKRCFISSLEPDAQKILKNSREHWEIENNLHWQLDVNFHEDNTRRRNISALNFSVLAKIALATLRNNKREIPINRKRLIAGWDNEFLWELILHDL
RQWVQSILKCYSGHIAIDGKTIRGAYESEEDKRRRKQGVLPDSNTGKYKLHVISAFATELGISLGQLCTQEKENEIVVIPELLDMLCIKDCIITIDALGC
QRTIAEKVIKGEGDYIFIVKDNQPKLKETVLSATESIVSKGTTVRFDKYETHEEGHGRNESRICYCCNDPGFLGADIRKKWKNIRSFGYIENTRNTNKGT
TVEKRCFISSLEPDAQKILKNSREHWEIENNLHWQLDVNFHEDNTRRRNISALNFSVLAKIALATLRNNKREIPINRKRLIAGWDNEFLWELILHDL
Blast result :
Comments
ISBthe4 is 54% aa similar to ISAzo3.
References
1] Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K., Chiang,H.C., Hooper,L.V. and Gordon,J.I. (2003) Science 299 (5615), 2074-2076