ISBthe4

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004663 ND Bacteroides thetaiotaomicron
Bacteroides thetaiotaomicron VPI-5482
DNA section
IS Length : 1353 bp

Ends


IR Length : 18/19

IRL : CAGGGGAAAACGCATTATACTTTTTCTTTTATCTTTTATACATTTATCTT
IRR : CAGGGAAAACGCATTATAAATCATGTAAAATAAGTTCCCATAAGAATTCA

Insertion site


Left flankDirect repeatRight flankDR Length
AACGATGAAGATGTCGGTTAGATAATACACAAACTTT10

DNA sequence

CAGGGGAAAACGCATTATACTTTTTCTTTTATCTTTTATACATTTATCTTACATGAATATCGGCTTTTCATCTTATTAATAAGATATTTATCTTTCATTT
ACAATATTATTTAAGTACATTTACGTGATTATAAATCACAATTAAAATGAAGCAAGAAACTAAAAGAAGGATTGAGATCAGCAACCTACATGAATTTGCT
GATTCATTAATATTGATAGATAACCGGATAGAGCGTTGTAAAAAGCATCAGGCCAGTACCATTGTTCTTATTGCCATTTCTGCTGTTATATGTGGCGCTG
ATACTTGGAATTCAATAGAAGACTTTGGTAAAAGTAAAGAATCTTTTTTTGCAGCCAAGCTTTCCAATTTTAATGGCATCCCTTCTCATGATACATTTAA
TCGCTTTTTCTCGGCATTAGATCCTTTAAAATTTGAAGAATCTTATAGACAATGGGTCCAAAGCATTCTCAAATGTTATTCGGGTCATATAGCCATTGAT
GGTAAAACCATACGAGGAGCCTATGAATCCGAAGAGGACAAGCGTCGTCGTAAACAAGGAGTACTTCCTGATTCGAATACGGGAAAATACAAATTGCATG
TTATTAGTGCATTTGCAACAGAACTGGGAATCTCCCTTGGACAGTTATGCACACAAGAAAAGGAAAATGAGATAGTTGTCATTCCTGAATTATTAGATAT
GTTGTGTATAAAAGATTGTATTATTACAATTGACGCTTTAGGATGCCAGCGTACAATTGCAGAGAAAGTCATAAAGGGAGAAGGTGACTACATTTTTATA
GTGAAAGATAATCAACCGAAATTAAAGGAAACAGTACTGTCAGCAACAGAAAGTATTGTATCAAAAGGTACAACAGTACGATTTGACAAATATGAGACGC
ATGAGGAAGGACATGGCAGGAATGAGTCGAGAATCTGCTATTGCTGCAACGATCCCGGTTTTCTGGGAGCAGATATTAGAAAGAAGTGGAAAAATATACG
GTCTTTTGGATATATTGAGAATACCAGAAATACAAACAAAGGCACTACAGTGGAAAAAAGATGTTTTATATCTTCCTTGGAACCTGATGCGCAGAAGATA
CTTAAAAATAGTAGAGAACACTGGGAAATTGAGAATAATCTACATTGGCAGTTGGATGTCAATTTCCATGAAGACAATACCAGAAGAAGAAATATATCAG
CATTAAACTTCTCCGTACTGGCGAAAATTGCATTGGCCACATTGAGAAACAACAAAAGAGAGATACCAATCAATAGAAAAAGATTAATAGCAGGGTGGGA
TAATGAATTCTTATGGGAACTTATTTTACATGATTTATAATGCGTTTTCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1194 bp397 aa1471340+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MKQETKRRIEISNLHEFADSLILIDNRIERCKKHQASTIVLIAISAVICGADTWNSIEDFGKSKESFFAAKLSNFNGIPSHDTFNRFFSALDPLKFEESY
RQWVQSILKCYSGHIAIDGKTIRGAYESEEDKRRRKQGVLPDSNTGKYKLHVISAFATELGISLGQLCTQEKENEIVVIPELLDMLCIKDCIITIDALGC
QRTIAEKVIKGEGDYIFIVKDNQPKLKETVLSATESIVSKGTTVRFDKYETHEEGHGRNESRICYCCNDPGFLGADIRKKWKNIRSFGYIENTRNTNKGT
TVEKRCFISSLEPDAQKILKNSREHWEIENNLHWQLDVNFHEDNTRRRNISALNFSVLAKIALATLRNNKREIPINRKRLIAGWDNEFLWELILHDL

 

Blast result :
Comments
ISBthe4 is 54% aa similar to ISAzo3.
References
1] Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K., Chiang,H.C., Hooper,L.V. and Gordon,J.I. (2003) Science 299 (5615), 2074-2076