ISBbi1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DQ093580 ND Bifidobacterium bifidum
Bifidobacterium bifidum plasmid pBIF10
DNA section
IS Length : 981 bp

Ends


IR Length : 21/30

IRL : CTGATTCTCCGCAAACACACCTAATATTTTTAGTATATTAGCGCTCAAAA
IRR : CTGATTATCCGTTTATGCACCTGTTATATTCGCAATTACTAGTCTGTCAA

Insertion site


Left flankDirect repeatRight flankDR Length
TCAATATTCAAATGA/T TAAAATTTTCTCTATTGGGTGAAA13

DNA sequence

CTGATTCTCCGCAAACACACCTAATATTTTTAGTATATTAGCGCTCAAAAAGCAGGGATTATGAACATATTCAGTTTTACGGCTCATTTCGGTTCGGAGG
AAGATTGTCGTTTGCATTTCAAGGAGCAGCGTGATAAGGAAGGGGTTGTCTGCAAGCGATGCGGGGGCACTTCCCATTATTGGTTACAGGGTAAATGGAG
TTATGAATGCAAAGGTTGCCGTTTCCGCACCTCGTTGCGCAGCGGTACGATCATGGAGAGCTCCAAGCTGCCGTTTCTGGTGTGGTACAAAACGATGTTC
CTGATGAGTTGCACAAAAAAGGGATTCTCCACCAACGAACTCCAGAAGCAATTAGGATTGAAGCGTTACGAACCGGTATGGGCGATGGTACACAAACTCC
GCAGGGCGATGGGCAACCGGGATGCAAGGTATACACTGGAAGGGATGATAGAACTGGATGAGGGTTACTTTTCGGTGGCCAGTAAGGAAATCGAGCGAGG
CAAGGGTACACGTGGCCGGGGAGCCGAGGGAAAGCAGAACGTTGCGGTGATGGCCGAAAGCACCCCGTTGGAAGATATCGAAACGGGCAAAAAGGAGAAG
CATGTGCGTTATTTCAAGGCCAGGGTACTGGATAGCCATCAAAGTGAAGGAATCAACGGCGTGGTCAGGGACTGCATGGAGGATGATGCCATTGTATTTT
CGGACAAAAGCACTTCTTACGTTGACATCTCCGATCTGGTGGAATTGCACGTCACCGAGAAATCAGACGCCAAAACCACCAAGGAAACACTCAAATGGGT
GCATATCGCAATCAGTAATGCAAAACGGACATTGCTGGGCAACTACCATAAAATCAAAAGGAAATACTTACAGTTGTATCTCAACGAGTTTATTTACAAA
TTAAACAGACGGTATTTTGGAGACAAACTCTTTGACAGACTAGTAATTGCGAATATAACAGGTGCATAAACGGATAATCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
847 bp302 aa61907+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIFSFTAHFGSEEDCRLHFKEQRDKEGVVCKRCGGTSHYWLQGKWSYECKGCRFRTSLRSGTIMESSKLPFLVWYKTMFLMSCTKKGFSTNELQKQLGL
KRYEPVWAMVHKLRRAMGNRDARYTLEGMIELDEGYFSVASKEIERGKGTRGRGAEGKQNVAVMAESTPLEDIETGKKEKHVRYFKARVLDSHQSEGING
VVRDCMEDDAIVFSDKSTSYVDISDLVELHVTEKSDAKTTKETLKWVHIAISNAKRTLLGNYHKIKRKYLQLYLNEFIYKLNRRYFGDKLFDRLVIANIT
GA

 

Blast result :
Comments
ISBbi1 is 55% aa similar to ISCku1.
References
1] Ma,Y., Qiu,Z. and Song,F. (2005) Direct submission GenBank.