ISBbi1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DQ093580 | ND | Bifidobacterium bifidum | Bifidobacterium bifidum plasmid pBIF10 |
DNA section
IS Length : 981 bp
Ends
IR Length : 21/30
IRL : CTGATTCTCCGCAAACACACCTAATATTTTTAGTATATTAGCGCTCAAAA
IRR : CTGATTATCCGTTTATGCACCTGTTATATTCGCAATTACTAGTCTGTCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAATATTCAAATG | A/T TAAAATTTT | CTCTATTGGGTGAAA | 13 |
DNA sequence
CTGATTCTCCGCAAACACACCTAATATTTTTAGTATATTAGCGCTCAAAAAGCAGGGATTATGAACATATTCAGTTTTACGGCTCATTTCGGTTCGGAGG
AAGATTGTCGTTTGCATTTCAAGGAGCAGCGTGATAAGGAAGGGGTTGTCTGCAAGCGATGCGGGGGCACTTCCCATTATTGGTTACAGGGTAAATGGAG
TTATGAATGCAAAGGTTGCCGTTTCCGCACCTCGTTGCGCAGCGGTACGATCATGGAGAGCTCCAAGCTGCCGTTTCTGGTGTGGTACAAAACGATGTTC
CTGATGAGTTGCACAAAAAAGGGATTCTCCACCAACGAACTCCAGAAGCAATTAGGATTGAAGCGTTACGAACCGGTATGGGCGATGGTACACAAACTCC
GCAGGGCGATGGGCAACCGGGATGCAAGGTATACACTGGAAGGGATGATAGAACTGGATGAGGGTTACTTTTCGGTGGCCAGTAAGGAAATCGAGCGAGG
CAAGGGTACACGTGGCCGGGGAGCCGAGGGAAAGCAGAACGTTGCGGTGATGGCCGAAAGCACCCCGTTGGAAGATATCGAAACGGGCAAAAAGGAGAAG
CATGTGCGTTATTTCAAGGCCAGGGTACTGGATAGCCATCAAAGTGAAGGAATCAACGGCGTGGTCAGGGACTGCATGGAGGATGATGCCATTGTATTTT
CGGACAAAAGCACTTCTTACGTTGACATCTCCGATCTGGTGGAATTGCACGTCACCGAGAAATCAGACGCCAAAACCACCAAGGAAACACTCAAATGGGT
GCATATCGCAATCAGTAATGCAAAACGGACATTGCTGGGCAACTACCATAAAATCAAAAGGAAATACTTACAGTTGTATCTCAACGAGTTTATTTACAAA
TTAAACAGACGGTATTTTGGAGACAAACTCTTTGACAGACTAGTAATTGCGAATATAACAGGTGCATAAACGGATAATCAG
AAGATTGTCGTTTGCATTTCAAGGAGCAGCGTGATAAGGAAGGGGTTGTCTGCAAGCGATGCGGGGGCACTTCCCATTATTGGTTACAGGGTAAATGGAG
TTATGAATGCAAAGGTTGCCGTTTCCGCACCTCGTTGCGCAGCGGTACGATCATGGAGAGCTCCAAGCTGCCGTTTCTGGTGTGGTACAAAACGATGTTC
CTGATGAGTTGCACAAAAAAGGGATTCTCCACCAACGAACTCCAGAAGCAATTAGGATTGAAGCGTTACGAACCGGTATGGGCGATGGTACACAAACTCC
GCAGGGCGATGGGCAACCGGGATGCAAGGTATACACTGGAAGGGATGATAGAACTGGATGAGGGTTACTTTTCGGTGGCCAGTAAGGAAATCGAGCGAGG
CAAGGGTACACGTGGCCGGGGAGCCGAGGGAAAGCAGAACGTTGCGGTGATGGCCGAAAGCACCCCGTTGGAAGATATCGAAACGGGCAAAAAGGAGAAG
CATGTGCGTTATTTCAAGGCCAGGGTACTGGATAGCCATCAAAGTGAAGGAATCAACGGCGTGGTCAGGGACTGCATGGAGGATGATGCCATTGTATTTT
CGGACAAAAGCACTTCTTACGTTGACATCTCCGATCTGGTGGAATTGCACGTCACCGAGAAATCAGACGCCAAAACCACCAAGGAAACACTCAAATGGGT
GCATATCGCAATCAGTAATGCAAAACGGACATTGCTGGGCAACTACCATAAAATCAAAAGGAAATACTTACAGTTGTATCTCAACGAGTTTATTTACAAA
TTAAACAGACGGTATTTTGGAGACAAACTCTTTGACAGACTAGTAATTGCGAATATAACAGGTGCATAAACGGATAATCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
847 bp | 302 aa | 61 | 907 | + | No |
Chemistry : DDE
ORF sequence :
MNIFSFTAHFGSEEDCRLHFKEQRDKEGVVCKRCGGTSHYWLQGKWSYECKGCRFRTSLRSGTIMESSKLPFLVWYKTMFLMSCTKKGFSTNELQKQLGL
KRYEPVWAMVHKLRRAMGNRDARYTLEGMIELDEGYFSVASKEIERGKGTRGRGAEGKQNVAVMAESTPLEDIETGKKEKHVRYFKARVLDSHQSEGING
VVRDCMEDDAIVFSDKSTSYVDISDLVELHVTEKSDAKTTKETLKWVHIAISNAKRTLLGNYHKIKRKYLQLYLNEFIYKLNRRYFGDKLFDRLVIANIT
GA
KRYEPVWAMVHKLRRAMGNRDARYTLEGMIELDEGYFSVASKEIERGKGTRGRGAEGKQNVAVMAESTPLEDIETGKKEKHVRYFKARVLDSHQSEGING
VVRDCMEDDAIVFSDKSTSYVDISDLVELHVTEKSDAKTTKETLKWVHIAISNAKRTLLGNYHKIKRKYLQLYLNEFIYKLNRRYFGDKLFDRLVIANIT
GA
Blast result :
Comments
ISBbi1 is 55% aa similar to ISCku1.
References
1] Ma,Y., Qiu,Z. and Song,F. (2005) Direct submission GenBank.