ISCfr1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF550415 ND Citrobacter freundii
Citrobacter freundii plasmid pCTX-M3
DNA section
IS Length : 1617 bp

Ends


IR Length : 25

IRL : CGGCCGATTCTGTTGAAAAAGTAGCGGCCTCCCCATGCCGTTGGCAAAAT
IRR : CGGCCGATTCTGTTGAAAAAGTAGCTTTAGCGGCAGCCTGCCGATCAGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GAGCCGAATGGCTGTGTGATTTGTGCCGGTCGTCAAGGACCG0

DNA sequence

CGGCCGATTCTGTTGAAAAAGTAGCGGCCTCCCCATGCCGTTGGCAAAATTGCTTTGTCAGCGAGCGTGGGGGCGAACAGCATGATGGGACAGTTACCGG
GAGGACAGCAGCGCCTGTTCTACTCGTTCAATCTGGAAGATCACGTCCCGGCCCAACATCTCCTGCGCAGCATCGACCAGTGCTTGGATCTCAGTGATCT
ACGTGCCTACCTGGCAGATTTCTATAGCCCCATCGGGCGTCCCTCGATTGACCCGGAGTTGATGGTGCGCATGCTGGTCGTCGGCTACTGCTATGGCATT
CGTTCCGAGCGGCGATTGTGCGAAGAGGTGCACCTGAACCTGGCCTATCGCTGGTTCTGCCGGTTGGGTCTGGAAGACGAAGTCCCCAATCACTCGACCT
TCTCGAAGAATCGCCATGGGCGTTTTCGTGACAGCGATCTATTCCGCTGGTTATTCAATGAGGTGCTGCGGCGCTGCATGGCAGCCGGCCTAGTCAAGGG
TGAAGGTTTCGCCGTCGACGCCAGCATCATTAAGGCGGATGCCAGCCGGCAACGTGGGGTGGCGGGAGATGAGGTCGATTGGAACGATCCAAAGCTCAGC
AGCCGCGCAGTGCGCGAGTACCTCGAAGCCCTTGATGAAGAGGCGCTGGCTGAGGCTCTTCCCAAGAAAATTTCGCTCACTGATCCTCAGTCCCGTTGGA
CAGCAGCGCCAGGTGGCCCGGCCTTTTTTGCCTACTCCACGAATTACCTGATCGACACTGAGCACGGTGTGATCATGGACGTGGAAGCTACCCCGGCGCA
CCGTACCGCCGAAGTCGATTCGACTAGGACGATGGTCGAGCGTGTCGAGGCGCAGTTCGATCTCACACCGGAACGCCTTATCGGCGATACCGCTTATGGC
ACCGCCCCGATGCTGGCCTGGATGGTCGAAGAAAAGGACATCGAACCGCATGTGCCGGTGTGGGACAAGACCGAGCGCAAGGACGACAGCCTCTCCAGTA
ACGACTTTCACTGGAGTCAGGACGCCAATGAATATCGCTGCCCAGCCGGCAAACCGCTACGCAGTGAATGGCGCGCCTTCACCCAGCAAAGGTCGCGGGT
AACTAAGGCCAAAACCGTCATTTACCGCTCCAGCCAAACCGACTGCGCCACCTGCCCGTTGAAAGCGAAATGCTGCCCCAACACGCCGAATCGGAAGATC
GTCCGCAGCATCCATGAGGCTGCCCGCGACGTGGCTCGACGCATCGCCAAGACACCGGAGTACCTCGTCTCTCGCTGCGAACGAAAGAAGGTGGAGATGC
TTTTCGCCCACCTCAAACGGATCATGAAACTCGACCGTTTACGACTGCGTGGCCTAACGGGTGCCACTGACGAATTCACCTTGGCTGCGATGGTGCAGAA
CCTGCGCCGCATGGCCAAGCTTTTGCCTCAAGGGCCACCGCTGACGGGATAGGTATGCCTGCTACGAGCAGAAACCCTCAAATTAACCCTTAAACCTGAG
CAAGGACGCTCAGTGAAACGCCGGAAGGCAACTTGAAGTGGCTTGCAGCCACTTCGACAGCAGGCACACCTGATCGGCAGGCTGCCGCTAAAGCTACTTT
TTCAACAGAATCGGCCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1371 bp456 aa821452+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMGQLPGGQQRLFYSFNLEDHVPAQHLLRSIDQCLDLSDLRAYLADFYSPIGRPSIDPELMVRMLVVGYCYGIRSERRLCEEVHLNLAYRWFCRLGLEDE
VPNHSTFSKNRHGRFRDSDLFRWLFNEVLRRCMAAGLVKGEGFAVDASIIKADASRQRGVAGDEVDWNDPKLSSRAVREYLEALDEEALAEALPKKISLT
DPQSRWTAAPGGPAFFAYSTNYLIDTEHGVIMDVEATPAHRTAEVDSTRTMVERVEAQFDLTPERLIGDTAYGTAPMLAWMVEEKDIEPHVPVWDKTERK
DDSLSSNDFHWSQDANEYRCPAGKPLRSEWRAFTQQRSRVTKAKTVIYRSSQTDCATCPLKAKCCPNTPNRKIVRSIHEAARDVARRIAKTPEYLVSRCE
RKKVEMLFAHLKRIMKLDRLRLRGLTGATDEFTLAAMVQNLRRMAKLLPQGPPLTG

 

Blast result :
Comments
ISCfr1 is 46% aa similar to IS1562.
References
1] ISfinder direct submission.
2] Golebiewski,M., Kern-Zdanowicz,I., Zienkiewicz,M., Adamczyk,M., Zylinska,J., Baraniak,A., Gniadkowski,M., Bardowski,J. and Ceglowski,P.(2007) Antimicrob. Agents Chemother. 51 (11), 3789-3795
3] Chen,C.-Y., Nace,G.W., Solow,B. and Fratamico,P. (2007) Plasmid 57 (1), 29-43