ISCfr1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF550415 | ND | Citrobacter freundii | Citrobacter freundii plasmid pCTX-M3 |
DNA section
IS Length : 1617 bp
Ends
IR Length : 25
IRL : CGGCCGATTCTGTTGAAAAAGTAGCGGCCTCCCCATGCCGTTGGCAAAAT
IRR : CGGCCGATTCTGTTGAAAAAGTAGCTTTAGCGGCAGCCTGCCGATCAGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGCCGAATGGCTGTGTG | ATTTGTGCCGGTCGTCAAGGACCG | 0 |
DNA sequence
CGGCCGATTCTGTTGAAAAAGTAGCGGCCTCCCCATGCCGTTGGCAAAATTGCTTTGTCAGCGAGCGTGGGGGCGAACAGCATGATGGGACAGTTACCGG
GAGGACAGCAGCGCCTGTTCTACTCGTTCAATCTGGAAGATCACGTCCCGGCCCAACATCTCCTGCGCAGCATCGACCAGTGCTTGGATCTCAGTGATCT
ACGTGCCTACCTGGCAGATTTCTATAGCCCCATCGGGCGTCCCTCGATTGACCCGGAGTTGATGGTGCGCATGCTGGTCGTCGGCTACTGCTATGGCATT
CGTTCCGAGCGGCGATTGTGCGAAGAGGTGCACCTGAACCTGGCCTATCGCTGGTTCTGCCGGTTGGGTCTGGAAGACGAAGTCCCCAATCACTCGACCT
TCTCGAAGAATCGCCATGGGCGTTTTCGTGACAGCGATCTATTCCGCTGGTTATTCAATGAGGTGCTGCGGCGCTGCATGGCAGCCGGCCTAGTCAAGGG
TGAAGGTTTCGCCGTCGACGCCAGCATCATTAAGGCGGATGCCAGCCGGCAACGTGGGGTGGCGGGAGATGAGGTCGATTGGAACGATCCAAAGCTCAGC
AGCCGCGCAGTGCGCGAGTACCTCGAAGCCCTTGATGAAGAGGCGCTGGCTGAGGCTCTTCCCAAGAAAATTTCGCTCACTGATCCTCAGTCCCGTTGGA
CAGCAGCGCCAGGTGGCCCGGCCTTTTTTGCCTACTCCACGAATTACCTGATCGACACTGAGCACGGTGTGATCATGGACGTGGAAGCTACCCCGGCGCA
CCGTACCGCCGAAGTCGATTCGACTAGGACGATGGTCGAGCGTGTCGAGGCGCAGTTCGATCTCACACCGGAACGCCTTATCGGCGATACCGCTTATGGC
ACCGCCCCGATGCTGGCCTGGATGGTCGAAGAAAAGGACATCGAACCGCATGTGCCGGTGTGGGACAAGACCGAGCGCAAGGACGACAGCCTCTCCAGTA
ACGACTTTCACTGGAGTCAGGACGCCAATGAATATCGCTGCCCAGCCGGCAAACCGCTACGCAGTGAATGGCGCGCCTTCACCCAGCAAAGGTCGCGGGT
AACTAAGGCCAAAACCGTCATTTACCGCTCCAGCCAAACCGACTGCGCCACCTGCCCGTTGAAAGCGAAATGCTGCCCCAACACGCCGAATCGGAAGATC
GTCCGCAGCATCCATGAGGCTGCCCGCGACGTGGCTCGACGCATCGCCAAGACACCGGAGTACCTCGTCTCTCGCTGCGAACGAAAGAAGGTGGAGATGC
TTTTCGCCCACCTCAAACGGATCATGAAACTCGACCGTTTACGACTGCGTGGCCTAACGGGTGCCACTGACGAATTCACCTTGGCTGCGATGGTGCAGAA
CCTGCGCCGCATGGCCAAGCTTTTGCCTCAAGGGCCACCGCTGACGGGATAGGTATGCCTGCTACGAGCAGAAACCCTCAAATTAACCCTTAAACCTGAG
CAAGGACGCTCAGTGAAACGCCGGAAGGCAACTTGAAGTGGCTTGCAGCCACTTCGACAGCAGGCACACCTGATCGGCAGGCTGCCGCTAAAGCTACTTT
TTCAACAGAATCGGCCG
GAGGACAGCAGCGCCTGTTCTACTCGTTCAATCTGGAAGATCACGTCCCGGCCCAACATCTCCTGCGCAGCATCGACCAGTGCTTGGATCTCAGTGATCT
ACGTGCCTACCTGGCAGATTTCTATAGCCCCATCGGGCGTCCCTCGATTGACCCGGAGTTGATGGTGCGCATGCTGGTCGTCGGCTACTGCTATGGCATT
CGTTCCGAGCGGCGATTGTGCGAAGAGGTGCACCTGAACCTGGCCTATCGCTGGTTCTGCCGGTTGGGTCTGGAAGACGAAGTCCCCAATCACTCGACCT
TCTCGAAGAATCGCCATGGGCGTTTTCGTGACAGCGATCTATTCCGCTGGTTATTCAATGAGGTGCTGCGGCGCTGCATGGCAGCCGGCCTAGTCAAGGG
TGAAGGTTTCGCCGTCGACGCCAGCATCATTAAGGCGGATGCCAGCCGGCAACGTGGGGTGGCGGGAGATGAGGTCGATTGGAACGATCCAAAGCTCAGC
AGCCGCGCAGTGCGCGAGTACCTCGAAGCCCTTGATGAAGAGGCGCTGGCTGAGGCTCTTCCCAAGAAAATTTCGCTCACTGATCCTCAGTCCCGTTGGA
CAGCAGCGCCAGGTGGCCCGGCCTTTTTTGCCTACTCCACGAATTACCTGATCGACACTGAGCACGGTGTGATCATGGACGTGGAAGCTACCCCGGCGCA
CCGTACCGCCGAAGTCGATTCGACTAGGACGATGGTCGAGCGTGTCGAGGCGCAGTTCGATCTCACACCGGAACGCCTTATCGGCGATACCGCTTATGGC
ACCGCCCCGATGCTGGCCTGGATGGTCGAAGAAAAGGACATCGAACCGCATGTGCCGGTGTGGGACAAGACCGAGCGCAAGGACGACAGCCTCTCCAGTA
ACGACTTTCACTGGAGTCAGGACGCCAATGAATATCGCTGCCCAGCCGGCAAACCGCTACGCAGTGAATGGCGCGCCTTCACCCAGCAAAGGTCGCGGGT
AACTAAGGCCAAAACCGTCATTTACCGCTCCAGCCAAACCGACTGCGCCACCTGCCCGTTGAAAGCGAAATGCTGCCCCAACACGCCGAATCGGAAGATC
GTCCGCAGCATCCATGAGGCTGCCCGCGACGTGGCTCGACGCATCGCCAAGACACCGGAGTACCTCGTCTCTCGCTGCGAACGAAAGAAGGTGGAGATGC
TTTTCGCCCACCTCAAACGGATCATGAAACTCGACCGTTTACGACTGCGTGGCCTAACGGGTGCCACTGACGAATTCACCTTGGCTGCGATGGTGCAGAA
CCTGCGCCGCATGGCCAAGCTTTTGCCTCAAGGGCCACCGCTGACGGGATAGGTATGCCTGCTACGAGCAGAAACCCTCAAATTAACCCTTAAACCTGAG
CAAGGACGCTCAGTGAAACGCCGGAAGGCAACTTGAAGTGGCTTGCAGCCACTTCGACAGCAGGCACACCTGATCGGCAGGCTGCCGCTAAAGCTACTTT
TTCAACAGAATCGGCCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1371 bp | 456 aa | 82 | 1452 | + | No |
Chemistry : DDE
ORF sequence :
MMGQLPGGQQRLFYSFNLEDHVPAQHLLRSIDQCLDLSDLRAYLADFYSPIGRPSIDPELMVRMLVVGYCYGIRSERRLCEEVHLNLAYRWFCRLGLEDE
VPNHSTFSKNRHGRFRDSDLFRWLFNEVLRRCMAAGLVKGEGFAVDASIIKADASRQRGVAGDEVDWNDPKLSSRAVREYLEALDEEALAEALPKKISLT
DPQSRWTAAPGGPAFFAYSTNYLIDTEHGVIMDVEATPAHRTAEVDSTRTMVERVEAQFDLTPERLIGDTAYGTAPMLAWMVEEKDIEPHVPVWDKTERK
DDSLSSNDFHWSQDANEYRCPAGKPLRSEWRAFTQQRSRVTKAKTVIYRSSQTDCATCPLKAKCCPNTPNRKIVRSIHEAARDVARRIAKTPEYLVSRCE
RKKVEMLFAHLKRIMKLDRLRLRGLTGATDEFTLAAMVQNLRRMAKLLPQGPPLTG
VPNHSTFSKNRHGRFRDSDLFRWLFNEVLRRCMAAGLVKGEGFAVDASIIKADASRQRGVAGDEVDWNDPKLSSRAVREYLEALDEEALAEALPKKISLT
DPQSRWTAAPGGPAFFAYSTNYLIDTEHGVIMDVEATPAHRTAEVDSTRTMVERVEAQFDLTPERLIGDTAYGTAPMLAWMVEEKDIEPHVPVWDKTERK
DDSLSSNDFHWSQDANEYRCPAGKPLRSEWRAFTQQRSRVTKAKTVIYRSSQTDCATCPLKAKCCPNTPNRKIVRSIHEAARDVARRIAKTPEYLVSRCE
RKKVEMLFAHLKRIMKLDRLRLRGLTGATDEFTLAAMVQNLRRMAKLLPQGPPLTG
Blast result :
Comments
ISCfr1 is 46% aa similar to IS1562.
References
1] ISfinder direct submission.
2] Golebiewski,M., Kern-Zdanowicz,I., Zienkiewicz,M., Adamczyk,M., Zylinska,J., Baraniak,A., Gniadkowski,M., Bardowski,J. and Ceglowski,P.(2007) Antimicrob. Agents Chemother. 51 (11), 3789-3795
3] Chen,C.-Y., Nace,G.W., Solow,B. and Fratamico,P. (2007) Plasmid 57 (1), 29-43
2] Golebiewski,M., Kern-Zdanowicz,I., Zienkiewicz,M., Adamczyk,M., Zylinska,J., Baraniak,A., Gniadkowski,M., Bardowski,J. and Ceglowski,P.(2007) Antimicrob. Agents Chemother. 51 (11), 3789-3795
3] Chen,C.-Y., Nace,G.W., Solow,B. and Fratamico,P. (2007) Plasmid 57 (1), 29-43