ISPlag1

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU271804 ND Planktothrix agardhii
Planktothrix agardhii
DNA section
IS Length : 1306 bp

Ends


IR Length : 29

IRL : CAGGACTTACGCAGGCACAGTATATATAGTGTGCAGTAAGCCAGCGAACG
IRR : CAGGACTTACGCAAGCACGCTATATATAGCGTACTAAAAGTAGGCGATCG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CAGGACTTACGCAGGCACAGTATATATAGTGTGCAGTAAGCCAGCGAACGCTGCCAATTGTTCAAGTATTTGCGCCAGCAATATAAAATTTAGACACAAA
AATTATGCTGATTGACAGATATTTAACAGTCAATATTTATGCTAAACTGATTAAGTTAATTTGGGGTGAAAAATATGTCGTTTAGCCAACTAGATTACTG
CCAATATCTATTGAGCAGCCCAAACAATTATACCTTAAATAACTTAGCCAACTACTTAGAAAATGTTAGCCATGATACCATAAATCGTTACTTAACCAAA
GAAAACTTCACCTCGGAATCTTTGTGGCAAAATGTCAAAAAAGATATCCAAATCAGTGAAAATAGTGCGATCATTTTTGATGATACAGTATTGGATAAAA
GGTTCGGGGAAAAAATTGAATTAGTCCGTCGTCAATATAGCGGAACAGAACATCGTGTACTGTCAGGTATTGGGCTGGTTAACTGTGTTTATGTTAATCC
AGAACTGGGTTTATTTTGGGTAATTGATTATCGCATATATGATCCAGAATATGATAATAAAACCAAACTAGATCATGTAGCTGATATGTTGAATAATCTG
GTGACAGAAAAACAACTACCCTTCGCAAAAGTCCTTATGGATAGCTGGTATGGGTCACAAAAACTAATGGCAATGATTGAAGAATTAGGAAAAATTTATT
ATTGCCCATTGAAAAAGAATCGTTTAGTAGATGACACAGGAGGAAAAGAAAAATACCAATCAATTGAAAAGTTAAACTGGTCTAATACTGAAGAAAAATC
AGGGAAGTTAATCAAAATCAAAAATTTCCCTAAATCTCATAAAGTCAAGCTATTTCGGGTTATTGTTTCTACCAACAGAACGGAATATGTAGCAACTAAT
GACTTAACTCAAGCATCCACATTGGATACGAAAAAAACCTGTGCTATTCGCTGGAAAATAGAGGAGTTTCACCGAGAAATTAAGCAGTTAACTGGGATTG
AATCTTGCCAGTGTCGTCAAGCTAGTATTCAAAGAAATCATATTGCTTGTGCCCTTTTAGTTTGGAATCAATTGAAAAGATTAGCTCATCTGACAAAGAA
AACAGTCTATCAGTTAAAAGCTGAATCTTTGTCCAGTTATTTAATCAAAGAACTGAATTGTCCTTCGATAAAAATGGAACTTGTTTGATTCTTTTGGGTT
TATTTTTAAATAAATAATCAGGACTTTTTAGGGTGATTGCTATTATCATTGGTATGCGATCGCCTACTTTTAGTACGCTATATATAGCGTGCTTGCGTAA
GTCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa1751188+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSFSQLDYCQYLLSSPNNYTLNNLANYLENVSHDTINRYLTKENFTSESLWQNVKKDIQISENSAIIFDDTVLDKRFGEKIELVRRQYSGTEHRVLSGIG
LVNCVYVNPELGLFWVIDYRIYDPEYDNKTKLDHVADMLNNLVTEKQLPFAKVLMDSWYGSQKLMAMIEELGKIYYCPLKKNRLVDDTGGKEKYQSIEKL
NWSNTEEKSGKLIKIKNFPKSHKVKLFRVIVSTNRTEYVATNDLTQASTLDTKKTCAIRWKIEEFHREIKQLTGIESCQCRQASIQRNHIACALLVWNQL
KRLAHLTKKTVYQLKAESLSSYLIKELNCPSIKMELV

 

Blast result :
Comments
Insertion sites or a direct repeated sequence have not been identified.
ISPlag1 is 53% aa similar to ISMhu9.
References
1] Christiansen, G., Molitor, C., Philmus, B., Kurmayer, R. (submitted) Non-toxic strains of Planktothrix sp. are the result of major gene deletion events induced by a transposable element. Mol. Microbiol.
2] Kurmayer, R.(2008) Direct submission.