ISSde3

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007954 ND Shewanella denitrificans
Shewanella denitrificans OS217
DNA section
IS Length : 1080 bp

Ends


IR Length : 23/29

IRL : CCCGAATTCAGATAATAACTGCGACACTCTTAATTGAGGCGTAGAAGAAG
IRR : CCCGAATTCAACTCCGAAGTGCGACACTCACCAAATTAAGCGGCTAATTG

Insertion site


Left flankDirect repeatRight flankDR Length
TAATACGATTGGTATAAATGCT2
AATCACCTTAAGCCATCCCTAA2
TAATAAGTTGAGCCATTGGAAT2
TGGATGCTATCTTCAGTAATAT2
CAATTTGATAATCTTCAATCGT2
GTTGTATTTAGCTAAGCTAATC2
TTTATGCTTACTAACTTCTATC2
GAACTATTGAGATAACAAGTCG2

DNA sequence

CCCGAATTCAGATAATAACTGCGACACTCTTAATTGAGGCGTAGAAGAAGCCAACTGCTGAAAGTGGTAGGCTTTATCTCGCCAAAGAAAAAAGAGTATC
ACTATGAGTTATCAGCAGTTGACTGAGGGAAGAAGATATCAGATTTCAGTCCTTTTAGACCAGGGTATTTCGATAGCTTTGATTGCAAAAGCTATCAATT
GTCATCGTGCGACTGTCTATCGAGAACTAAAACGTTGTCATGCCCTGCAGGGTTATTGCCCTGACAGCGCTCAAGCCAGTGCGTGTAAGATGCGGCGTCA
TTCAGCCAAATATACCATCCCCGATACAAGAATAAACTTCGTCCGCTTCCTACTGCAACATGATTGGAGCCCAGAGCAGATTTCACGGGTGTTATCGGGC
ATGAACCAAGCTGTTAGTCATGAATGGATTTACCGCTTTGTGGCAAGGAATAAACGTCAAGGCGGCAAGCTATATCGCCATCTACGGCAAGGTCATAAGC
GCTATCGCAGAGGTAAAAAAGAGAAAGCGCCAGCGATTAAAAATGGTACCTCTATCGACTCTAGACCTGCCATTGTTGATACTCGCGAACGTTTCGGTGA
TTGGGAAATCGATACCGTATTAGGCAAGCATGGGACAGGTTCAATAGTGACAATTTTAGAGCGAAAGACCCGTTTTTATTTAATAAAGAAAGTGGCCTCA
AAATCTGCTGAAGATGTGACTAAAGCGACTATCGAATTATTGATGCCCTATAAGCAATATGTGCACACTATAACTGCCGATAATGGTCGTGAATTCGCTC
ATCATGAAGTCATAGCCAACGCGTTAGACACAACATTTTACTTTGCTCATCCGTATAGTTCTTGGGAACGTGGCGCCAATGAAAATGCCAACGGTTTATT
AAGGCAGTATGTAAAAAAAGGGACTGACTTAAGGACAGTAAGCGACGCCATCATCTTATTTGCCCAGAACAGGATTAATTACAGACCTAAGAAATGTTTG
AAGTTTAAGCAGCCAACTGTTGTGTTTAAACAATTAGCCGCTTAATTTGGTGAGTGTCGCACTTCGGAGTTGAATTCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa1041045+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYQQLTEGRRYQISVLLDQGISIALIAKAINCHRATVYRELKRCHALQGYCPDSAQASACKMRRHSAKYTIPDTRINFVRFLLQHDWSPEQISRVLSGM
NQAVSHEWIYRFVARNKRQGGKLYRHLRQGHKRYRRGKKEKAPAIKNGTSIDSRPAIVDTRERFGDWEIDTVLGKHGTGSIVTILERKTRFYLIKKVASK
SAEDVTKATIELLMPYKQYVHTITADNGREFAHHEVIANALDTTFYFAHPYSSWERGANENANGLLRQYVKKGTDLRTVSDAIILFAQNRINYRPKKCLK
FKQPTVVFKQLAA

 

Blast result :
Comments
The ISSde3 transposase has 58% identity to ISAs2. There are 8 copies of ISSde3 on the chromosome of Shewanella denitrificans.
References
1] Romine, M. F. (2008) Direct submission.