ISSde3
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007954 | ND | Shewanella denitrificans | Shewanella denitrificans OS217 |
DNA section
IS Length : 1080 bp
Ends
IR Length : 23/29
IRL : CCCGAATTCAGATAATAACTGCGACACTCTTAATTGAGGCGTAGAAGAAG
IRR : CCCGAATTCAACTCCGAAGTGCGACACTCACCAAATTAAGCGGCTAATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATACGATT | GG | TATAAATGCT | 2 |
AATCACCTTA | AG | CCATCCCTAA | 2 |
TAATAAGTTG | AG | CCATTGGAAT | 2 |
TGGATGCTAT | CT | TCAGTAATAT | 2 |
CAATTTGATA | AT | CTTCAATCGT | 2 |
GTTGTATTTA | GC | TAAGCTAATC | 2 |
TTTATGCTTA | CT | AACTTCTATC | 2 |
GAACTATTGA | GA | TAACAAGTCG | 2 |
DNA sequence
CCCGAATTCAGATAATAACTGCGACACTCTTAATTGAGGCGTAGAAGAAGCCAACTGCTGAAAGTGGTAGGCTTTATCTCGCCAAAGAAAAAAGAGTATC
ACTATGAGTTATCAGCAGTTGACTGAGGGAAGAAGATATCAGATTTCAGTCCTTTTAGACCAGGGTATTTCGATAGCTTTGATTGCAAAAGCTATCAATT
GTCATCGTGCGACTGTCTATCGAGAACTAAAACGTTGTCATGCCCTGCAGGGTTATTGCCCTGACAGCGCTCAAGCCAGTGCGTGTAAGATGCGGCGTCA
TTCAGCCAAATATACCATCCCCGATACAAGAATAAACTTCGTCCGCTTCCTACTGCAACATGATTGGAGCCCAGAGCAGATTTCACGGGTGTTATCGGGC
ATGAACCAAGCTGTTAGTCATGAATGGATTTACCGCTTTGTGGCAAGGAATAAACGTCAAGGCGGCAAGCTATATCGCCATCTACGGCAAGGTCATAAGC
GCTATCGCAGAGGTAAAAAAGAGAAAGCGCCAGCGATTAAAAATGGTACCTCTATCGACTCTAGACCTGCCATTGTTGATACTCGCGAACGTTTCGGTGA
TTGGGAAATCGATACCGTATTAGGCAAGCATGGGACAGGTTCAATAGTGACAATTTTAGAGCGAAAGACCCGTTTTTATTTAATAAAGAAAGTGGCCTCA
AAATCTGCTGAAGATGTGACTAAAGCGACTATCGAATTATTGATGCCCTATAAGCAATATGTGCACACTATAACTGCCGATAATGGTCGTGAATTCGCTC
ATCATGAAGTCATAGCCAACGCGTTAGACACAACATTTTACTTTGCTCATCCGTATAGTTCTTGGGAACGTGGCGCCAATGAAAATGCCAACGGTTTATT
AAGGCAGTATGTAAAAAAAGGGACTGACTTAAGGACAGTAAGCGACGCCATCATCTTATTTGCCCAGAACAGGATTAATTACAGACCTAAGAAATGTTTG
AAGTTTAAGCAGCCAACTGTTGTGTTTAAACAATTAGCCGCTTAATTTGGTGAGTGTCGCACTTCGGAGTTGAATTCGGG
ACTATGAGTTATCAGCAGTTGACTGAGGGAAGAAGATATCAGATTTCAGTCCTTTTAGACCAGGGTATTTCGATAGCTTTGATTGCAAAAGCTATCAATT
GTCATCGTGCGACTGTCTATCGAGAACTAAAACGTTGTCATGCCCTGCAGGGTTATTGCCCTGACAGCGCTCAAGCCAGTGCGTGTAAGATGCGGCGTCA
TTCAGCCAAATATACCATCCCCGATACAAGAATAAACTTCGTCCGCTTCCTACTGCAACATGATTGGAGCCCAGAGCAGATTTCACGGGTGTTATCGGGC
ATGAACCAAGCTGTTAGTCATGAATGGATTTACCGCTTTGTGGCAAGGAATAAACGTCAAGGCGGCAAGCTATATCGCCATCTACGGCAAGGTCATAAGC
GCTATCGCAGAGGTAAAAAAGAGAAAGCGCCAGCGATTAAAAATGGTACCTCTATCGACTCTAGACCTGCCATTGTTGATACTCGCGAACGTTTCGGTGA
TTGGGAAATCGATACCGTATTAGGCAAGCATGGGACAGGTTCAATAGTGACAATTTTAGAGCGAAAGACCCGTTTTTATTTAATAAAGAAAGTGGCCTCA
AAATCTGCTGAAGATGTGACTAAAGCGACTATCGAATTATTGATGCCCTATAAGCAATATGTGCACACTATAACTGCCGATAATGGTCGTGAATTCGCTC
ATCATGAAGTCATAGCCAACGCGTTAGACACAACATTTTACTTTGCTCATCCGTATAGTTCTTGGGAACGTGGCGCCAATGAAAATGCCAACGGTTTATT
AAGGCAGTATGTAAAAAAAGGGACTGACTTAAGGACAGTAAGCGACGCCATCATCTTATTTGCCCAGAACAGGATTAATTACAGACCTAAGAAATGTTTG
AAGTTTAAGCAGCCAACTGTTGTGTTTAAACAATTAGCCGCTTAATTTGGTGAGTGTCGCACTTCGGAGTTGAATTCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 104 | 1045 | + | No |
Chemistry : DDE
ORF sequence :
MSYQQLTEGRRYQISVLLDQGISIALIAKAINCHRATVYRELKRCHALQGYCPDSAQASACKMRRHSAKYTIPDTRINFVRFLLQHDWSPEQISRVLSGM
NQAVSHEWIYRFVARNKRQGGKLYRHLRQGHKRYRRGKKEKAPAIKNGTSIDSRPAIVDTRERFGDWEIDTVLGKHGTGSIVTILERKTRFYLIKKVASK
SAEDVTKATIELLMPYKQYVHTITADNGREFAHHEVIANALDTTFYFAHPYSSWERGANENANGLLRQYVKKGTDLRTVSDAIILFAQNRINYRPKKCLK
FKQPTVVFKQLAA
NQAVSHEWIYRFVARNKRQGGKLYRHLRQGHKRYRRGKKEKAPAIKNGTSIDSRPAIVDTRERFGDWEIDTVLGKHGTGSIVTILERKTRFYLIKKVASK
SAEDVTKATIELLMPYKQYVHTITADNGREFAHHEVIANALDTTFYFAHPYSSWERGANENANGLLRQYVKKGTDLRTVSDAIILFAQNRINYRPKKCLK
FKQPTVVFKQLAA
Blast result :
Comments
The ISSde3 transposase has 58% identity to ISAs2. There are 8 copies of ISSde3 on the chromosome of Shewanella denitrificans.
References
1] Romine, M. F. (2008) Direct submission.