ISSde9
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007954 | ND | Shewanella denitrificans | Shewanella denitrificans OS217 |
DNA section
IS Length : 1244 bp
Ends
IR Length : 16/25
IRL : CAAGGCCAGATCGTGAACGTTATTTGAGCGATTTTAGAAGAATATTGACC
IRR : CAGGGCAACCGCATGAGTGTTCATTATTTAGTCGGTGCGCATAATCCAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATCCTTCGC | ATCAAAGGGG | CCACAAGCCT | 10 |
TGTAGCTCAG | GGGGAAGGGC | CTATCCAGTA | 10 |
ATTTAACAGG | CCGCACTCAT | GGAAGGTCAT | 10 |
GCGTGTCCTT | GTTAAGGGGC | TCTTGAAAAA | 10 |
TTTAGCGGGG | GGGATTAATA | CCTATGGGTA | 10 |
DNA sequence
CAAGGCCAGATCGTGAACGTTATTTGAGCGATTTTAGAAGAATATTGACCTGATCACGTGCTTGTGATCTTATACTCCTTTTTCAGGAGTCAGCTCATGT
ATATCGAATCATTCAAGCAGCATTTTAGTGCCATTGACGACCATCGCCAAAGTGCAAAAGTTACCTATCCCCTGTTCGATGTACTGTTCGGTTCGCTGTG
CGCTGTTATTGCGAGTTCCAATGGCTGGTTCGAGATCCGAGAATACATTCTTGGTCACCATTCTTGGTTCAAAAAACAAAAAATGTTCATCGATGGGATC
CCTGCTGACGATACCATTGCTAGGATAGTTTCTATGATTGAGCCAGATAGCTTTAATGCGTGCTTTCTCGCATGGATGAAGTCGGTTCATCAGCTGACTA
ATGGAGAAGTCATTGCGATTGATGGAAAGACGCTACGTGGGTCATATAATCGCGATGATCGAAGCAGTACTATTCACATGATAAGCGCTTATGCCTCAGC
GAATAAGTTGGTACTTGGTCAATTAAAAGCAGAGCAAAAAAGTAATGAAATCACAGCCATTCCAACCCTATTAAAAATGCTAGACCTGCGCGGAGCGCTA
GTGACAATCGATGCTATGGGCTGTCAAACGGCTATTGCTACAACGATTATCGACAAAGGTGGTGACTACCTATTGGCGGTAAAAAACAATCAAGGCAACT
TAGCTAAAGCAATAAATAAAGCCTTTAGTTCGCATCGTTCGGCTGGCTTAAGTGATGACCATGTCAATATAGAAAAAAGCCATGGTCGTATAGAAAATCG
AGCCTGTTTTGTGTTGAGCTCAGCAGAGCTTGACGGTGATTTTACACATTGGGAAGCACTCAAATCCATCGTTATGGTTGAAAGCTTTAGGGCTGTTAAA
GGTAAGACGGCGAGCCTTGAATATCGTTACTATATCAGTTCGAAAGTGTTATCAGCAGAGCAAGCCTTAAGTGCGACTCGCGAACATTGGGGGATCGAGT
CAATGCACTGGGTCTTGGATGTCAGCATGAACGAAGATGAATGCCAGATCTACAAAAATAACGGCGCTGAAAATCTCGCTTACTTAAGGCACATGTCGCT
AAACATGCTGCAAAAAGAACCGACAAAGCTCAGTATTGTTGGTAAACGAAAGCGTTGTTTAATGAATCCAGCATTTCTGGAGAAGGTGTTAATCGCTGGA
TTATGCGCACCGACTAAATAATGAACACTCATGCGGTTGCCCTG
ATATCGAATCATTCAAGCAGCATTTTAGTGCCATTGACGACCATCGCCAAAGTGCAAAAGTTACCTATCCCCTGTTCGATGTACTGTTCGGTTCGCTGTG
CGCTGTTATTGCGAGTTCCAATGGCTGGTTCGAGATCCGAGAATACATTCTTGGTCACCATTCTTGGTTCAAAAAACAAAAAATGTTCATCGATGGGATC
CCTGCTGACGATACCATTGCTAGGATAGTTTCTATGATTGAGCCAGATAGCTTTAATGCGTGCTTTCTCGCATGGATGAAGTCGGTTCATCAGCTGACTA
ATGGAGAAGTCATTGCGATTGATGGAAAGACGCTACGTGGGTCATATAATCGCGATGATCGAAGCAGTACTATTCACATGATAAGCGCTTATGCCTCAGC
GAATAAGTTGGTACTTGGTCAATTAAAAGCAGAGCAAAAAAGTAATGAAATCACAGCCATTCCAACCCTATTAAAAATGCTAGACCTGCGCGGAGCGCTA
GTGACAATCGATGCTATGGGCTGTCAAACGGCTATTGCTACAACGATTATCGACAAAGGTGGTGACTACCTATTGGCGGTAAAAAACAATCAAGGCAACT
TAGCTAAAGCAATAAATAAAGCCTTTAGTTCGCATCGTTCGGCTGGCTTAAGTGATGACCATGTCAATATAGAAAAAAGCCATGGTCGTATAGAAAATCG
AGCCTGTTTTGTGTTGAGCTCAGCAGAGCTTGACGGTGATTTTACACATTGGGAAGCACTCAAATCCATCGTTATGGTTGAAAGCTTTAGGGCTGTTAAA
GGTAAGACGGCGAGCCTTGAATATCGTTACTATATCAGTTCGAAAGTGTTATCAGCAGAGCAAGCCTTAAGTGCGACTCGCGAACATTGGGGGATCGAGT
CAATGCACTGGGTCTTGGATGTCAGCATGAACGAAGATGAATGCCAGATCTACAAAAATAACGGCGCTGAAAATCTCGCTTACTTAAGGCACATGTCGCT
AAACATGCTGCAAAAAGAACCGACAAAGCTCAGTATTGTTGGTAAACGAAAGCGTTGTTTAATGAATCCAGCATTTCTGGAGAAGGTGTTAATCGCTGGA
TTATGCGCACCGACTAAATAATGAACACTCATGCGGTTGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1125 bp | 374 aa | 97 | 1221 | + | No |
Chemistry : Unknow
ORF sequence :
MYIESFKQHFSAIDDHRQSAKVTYPLFDVLFGSLCAVIASSNGWFEIREYILGHHSWFKKQKMFIDGIPADDTIARIVSMIEPDSFNACFLAWMKSVHQL
TNGEVIAIDGKTLRGSYNRDDRSSTIHMISAYASANKLVLGQLKAEQKSNEITAIPTLLKMLDLRGALVTIDAMGCQTAIATTIIDKGGDYLLAVKNNQG
NLAKAINKAFSSHRSAGLSDDHVNIEKSHGRIENRACFVLSSAELDGDFTHWEALKSIVMVESFRAVKGKTASLEYRYYISSKVLSAEQALSATREHWGI
ESMHWVLDVSMNEDECQIYKNNGAENLAYLRHMSLNMLQKEPTKLSIVGKRKRCLMNPAFLEKVLIAGLCAPTK
TNGEVIAIDGKTLRGSYNRDDRSSTIHMISAYASANKLVLGQLKAEQKSNEITAIPTLLKMLDLRGALVTIDAMGCQTAIATTIIDKGGDYLLAVKNNQG
NLAKAINKAFSSHRSAGLSDDHVNIEKSHGRIENRACFVLSSAELDGDFTHWEALKSIVMVESFRAVKGKTASLEYRYYISSKVLSAEQALSATREHWGI
ESMHWVLDVSMNEDECQIYKNNGAENLAYLRHMSLNMLQKEPTKLSIVGKRKRCLMNPAFLEKVLIAGLCAPTK
Blast result :
Comments
The ISSde9 transposase has 58% identity to ISSod22. There are 5 full length copies of ISSde9 encoded in the Shewanella denitrificans genome. An additional copy is degenerate, lacking sequences internal to the element (the ends are still intact).
References
1] Romine, M. F. (2008) Direct submission.