ISSde9

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007954 ND Shewanella denitrificans
Shewanella denitrificans OS217
DNA section
IS Length : 1244 bp

Ends


IR Length : 16/25

IRL : CAAGGCCAGATCGTGAACGTTATTTGAGCGATTTTAGAAGAATATTGACC
IRR : CAGGGCAACCGCATGAGTGTTCATTATTTAGTCGGTGCGCATAATCCAGC

Insertion site


Left flankDirect repeatRight flankDR Length
AATCCTTCGCATCAAAGGGGCCACAAGCCT10
TGTAGCTCAGGGGGAAGGGCCTATCCAGTA10
ATTTAACAGGCCGCACTCATGGAAGGTCAT10
GCGTGTCCTTGTTAAGGGGCTCTTGAAAAA10
TTTAGCGGGGGGGATTAATACCTATGGGTA10

DNA sequence

CAAGGCCAGATCGTGAACGTTATTTGAGCGATTTTAGAAGAATATTGACCTGATCACGTGCTTGTGATCTTATACTCCTTTTTCAGGAGTCAGCTCATGT
ATATCGAATCATTCAAGCAGCATTTTAGTGCCATTGACGACCATCGCCAAAGTGCAAAAGTTACCTATCCCCTGTTCGATGTACTGTTCGGTTCGCTGTG
CGCTGTTATTGCGAGTTCCAATGGCTGGTTCGAGATCCGAGAATACATTCTTGGTCACCATTCTTGGTTCAAAAAACAAAAAATGTTCATCGATGGGATC
CCTGCTGACGATACCATTGCTAGGATAGTTTCTATGATTGAGCCAGATAGCTTTAATGCGTGCTTTCTCGCATGGATGAAGTCGGTTCATCAGCTGACTA
ATGGAGAAGTCATTGCGATTGATGGAAAGACGCTACGTGGGTCATATAATCGCGATGATCGAAGCAGTACTATTCACATGATAAGCGCTTATGCCTCAGC
GAATAAGTTGGTACTTGGTCAATTAAAAGCAGAGCAAAAAAGTAATGAAATCACAGCCATTCCAACCCTATTAAAAATGCTAGACCTGCGCGGAGCGCTA
GTGACAATCGATGCTATGGGCTGTCAAACGGCTATTGCTACAACGATTATCGACAAAGGTGGTGACTACCTATTGGCGGTAAAAAACAATCAAGGCAACT
TAGCTAAAGCAATAAATAAAGCCTTTAGTTCGCATCGTTCGGCTGGCTTAAGTGATGACCATGTCAATATAGAAAAAAGCCATGGTCGTATAGAAAATCG
AGCCTGTTTTGTGTTGAGCTCAGCAGAGCTTGACGGTGATTTTACACATTGGGAAGCACTCAAATCCATCGTTATGGTTGAAAGCTTTAGGGCTGTTAAA
GGTAAGACGGCGAGCCTTGAATATCGTTACTATATCAGTTCGAAAGTGTTATCAGCAGAGCAAGCCTTAAGTGCGACTCGCGAACATTGGGGGATCGAGT
CAATGCACTGGGTCTTGGATGTCAGCATGAACGAAGATGAATGCCAGATCTACAAAAATAACGGCGCTGAAAATCTCGCTTACTTAAGGCACATGTCGCT
AAACATGCTGCAAAAAGAACCGACAAAGCTCAGTATTGTTGGTAAACGAAAGCGTTGTTTAATGAATCCAGCATTTCTGGAGAAGGTGTTAATCGCTGGA
TTATGCGCACCGACTAAATAATGAACACTCATGCGGTTGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1125 bp374 aa971221+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MYIESFKQHFSAIDDHRQSAKVTYPLFDVLFGSLCAVIASSNGWFEIREYILGHHSWFKKQKMFIDGIPADDTIARIVSMIEPDSFNACFLAWMKSVHQL
TNGEVIAIDGKTLRGSYNRDDRSSTIHMISAYASANKLVLGQLKAEQKSNEITAIPTLLKMLDLRGALVTIDAMGCQTAIATTIIDKGGDYLLAVKNNQG
NLAKAINKAFSSHRSAGLSDDHVNIEKSHGRIENRACFVLSSAELDGDFTHWEALKSIVMVESFRAVKGKTASLEYRYYISSKVLSAEQALSATREHWGI
ESMHWVLDVSMNEDECQIYKNNGAENLAYLRHMSLNMLQKEPTKLSIVGKRKRCLMNPAFLEKVLIAGLCAPTK

 

Blast result :
Comments
The ISSde9 transposase has 58% identity to ISSod22. There are 5 full length copies of ISSde9 encoded in the Shewanella denitrificans genome. An additional copy is degenerate, lacking sequences internal to the element (the ends are still intact).
References
1] Romine, M. F. (2008) Direct submission.