ISRhru1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007643 ND Rhodospirillum rubrum
Rhodospirillum rubrum ATCC 11170
DNA section
IS Length : 1029 bp

Ends


IR Length : 22/28

IRL : ATGGCTTATCCCTCAGCCTCCGAGGGCACGATATCTGGTGTGCGGATCGC
IRR : ATGGCTTATCCCTGTGCTTCCGGGGCGATCAGCATGTTGTAGGTGACGGG

Insertion site


Left flankDirect repeatRight flankDR Length
TGTATCCGTCTCTTCGAGGGATATCCTCG0

DNA sequence

ATGGCTTATCCCTCAGCCTCCGAGGGCACGATATCTGGTGTGCGGATCGCGCGAGTTCTGTAGAATACAACATGAACATGCAGCCACCGGAGGGGCGCCA
TGCCTGACTTTCCCCGCTCTGTTCTGGAGTTCCAACGCCGGTTCCCCGACGAGGCCGCGTGCGCGGCATGACTGGCGGCGGCGCGATGGCCGGATGGCTT
CCGCTGCCCGGCCGGTGGCCACGATCACGCCTGGAAACGCGACACCAAGGCGTGGACCTATGAATGCACCAAATGCCATCGGCAGACTTCGGTCGCGGCG
GGGACGGTGATGCACGGCTCGAAACTGCCGCTGACTGTGTGGTTCTGGGCGGCCTATTTGATGGCCACCCACTCCAACGGCATTTCAGCCCGCCAGATGG
GGCGGCACCTGGGGCTAGGCTCCTACAAGAGCGCTTGGCTGCTGTGCGCCAAGCTGCGCGGGGCCATGGTCAATCTTGCCCGCGCCCTGCTGTCCGGCCT
CGTCGAGATCGACGAGACCCAAATTTCCTACCGCACCAAGGATAATCCGGTAGCGGGTGGCGGCGGGCGCAGCCCGGAGGGCAAGATGCAGGTCGTTGTC
GCCGTCGAAGTCATCGACAACGCCCCGGGCCGCCTGCGCCTCGGCGTGATCGATGATGCATCGTCGGCCAGCCTGCACCCGTTCATCAAGGCCAGCGTCG
CGTCCGGCGCCACCCTGAAGACCGATGGCTGGAGCGCCTACCCCGGTGCCCCCGGCTACAAGCACGAACCCCATGTCGTCGGCAAGATGGCTGCTCACAT
CGTCCTGCCCTGGGTCCACCGCGTCATTTCTAACCTCAAGACCTGGGCGCTCGGCGTCTATCACGGCCTGCGGCGCCAGCACCTACAGTCCTACCTGAAC
GAGTTCGTCTTCCGCTTCAACTGCCGCAGAACGCCTCATGCCGCTTTCCGAACCCTGCTCGGCATCGGCCTCGCCATCCAGCCCGTCACCTACAACATGC
TGATCGCCCCGGAAGCACAGGGATAAGCCAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
927 bp308 aa1001026+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPDFPRSVLEFQRRFPDEAACAA*LAAARWPDGFRCPAGGHDHAWKRDTKAWTYECTKCHRQTSVAAGTVMHGSKLPLTVWFWAAYLMATHSNGISARQM
GRHLGLGSYKSAWLLCAKLRGAMVNLARALLSGLVEIDETQISYRTKDNPVAGGGGRSPEGKMQVVVAVEVIDNAPGRLRLGVIDDASSASLHPFIKASV
ASGATLKTDGWSAYPGAPGYKHEPHVVGKMAAHIVLPWVHRVISNLKTWALGVYHGLRRQHLQSYLNEFVFRFNCRRTPHAAFRTLLGIGLAIQPVTYNM
LIAPEAQG

 

Blast result :
Comments
ISRhru1 is 79% aa similar to ISApr2.
There is an in frame stop codon at position 24 in the transposase.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P.(2005) Direct submission GenBank.