ISMrsp3

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAXY01000005 ND Marinobacter sp.
Marinobacter sp. ELB17
DNA section
IS Length : 1049 bp

Ends


IR Length : 22

IRL : GGGGTATCCCTTTAGCTCCACAAATGGCAAAATCTCTCAATGGATGTGCC
IRR : GGGGTATCCCTTTAGCTCCACAGACTTCAATTTCCAGATTTTCCTCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGAATACTGTATAAATAAAtCAGTAATCGGTGAAAATC12

DNA sequence

GGGGTATCCCTTTAGCTCCACAAATGGCAAAATCTCTCAATGGATGTGCCAACAATTGCTCCGATAGGTGGAAAAGATTATCCAACGACCTGGGTTCAAT
TCCTTGATTGGTTCCACTCTGAACAAGCGTGCCGGGATTTTTTGGAACAGCTACGCTGGTCGGACGGACTGGTTTGCCCGAAGTGTGGGGTAATATCGCA
AGTTCATCGACGCAGTCGCGGCAGATTGATCTGTCCAGCATGCAGACATCAAGCAACGGTAACAGCGGGTACCATTTTTGATAAAACGCGCACAGAGCTT
CGCGTCTGGTTTGCCGCCATTTGGTACATCACCAACCAAAAGCATGGCGTCAGCGCATTGGGGTTGCAGCGTGTACTTGGCCTTGGCAGCTATGAGACAG
CGTGGACCATGCTGCACAGGCTGCGCCGAGCAATGGTACGCACAGACAGAGAGTTGCTCCATGGAGAGGTTGAGGTCGATGAAACCTATCTTGCACTCAC
CGACCGAGCCAACCCGATTAGTGCGGTGGGACGTAAAAGCAACACCACCAAGGTGTTGGTCGCCATAGCAGTGGAGATACTGCAACCCAAGGGATTTGGA
AGAATACGGATTCAACGGATTGAGCGTGGTGACAACGATAACCTGATGCCCTTCATCAAAGCCTTCATTCGTCCAGGATCGCTCATCCATAGCGATGGCT
CACCTGCTTACCGCCTGCTCACGGAGAGTGGATATGAGCACCGACAAACGGTTCATCTTGGTTCAGCCACTCCAGCCCATGAATCAATGCCAGGCGTTCA
CCGTGTGGCATCACTCTTGCAACGCTGGATGATGGGCACACACCATGGCGCAGTCCAGCCAGGACAGTTGGATAATTATCTTGATGAATATGTATTTCGG
TTTAATCGCCGTAAATCCAAATCAAGAGGCTTACTGTTTTATCGCTTGCTCCAGCAAGCAGTTGTGACAAAGCCGGTCACCTACCAAAAGGTGGTGGCAC
GGCGAGGAAAATCTGGAAATTGAAGTCTGTGGAGCTAAAGGGATACCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
984 bp327 aa401023+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVPTIAPIGGKDYPTTWVQFLDWFHSEQACRDFLEQLRWSDGLVCPKCGVISQVHRRSRGRLICPACRHQATVTAGTIFDKTRTELRVWFAAIWYITNQ
KHGVSALGLQRVLGLGSYETAWTMLHRLRRAMVRTDRELLHGEVEVDETYLALTDRANPISAVGRKSNTTKVLVAIAVEILQPKGFGRIRIQRIERGDND
NLMPFIKAFIRPGSLIHSDGSPAYRLLTESGYEHRQTVHLGSATPAHESMPGVHRVASLLQRWMMGTHHGAVQPGQLDNYLDEYVFRFNRRKSKSRGLLF
YRLLQQAVVTKPVTYQKVVARRGKSGN

 

Blast result :
Comments
ISMrsp3 is 80% aa similar to ISAisp1.
References
1] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.