ISDal1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABII01000006 | ND | Desulfatibacillum alkenivorans | Desulfatibacillum alkenivorans AK-01 |
DNA section
IS Length : 1027 bp
Ends
IR Length : 20/21
IRL : GGGGTATGCACTTGACTCAAGTGACCACAATATGTAGTGTTGCGGGCCAT
IRR : GGGGTATGCAGTTAACTCAAGCGCCCCCTATATCTTGTGGTTCAGGTGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTGAAAATCATGGTGGAA | AATTGTAAATC/TT | TTACATACAGTCCTTAACTT | 12 |
DNA sequence
GGGGTATGCACTTGACTCAAGTGACCACAATATGTAGTGTTGCGGGCCATGGAGGATTTCCCGCAGACATTGAGTGAGTTTGAGGACCGATTCGGAACGG
AAGAGGCTTGTCTGGCCTATCTTTCCGCCCTGCGATGGCCTAATGGCTTTGTATGCCCGCATTGCGAAGGCTCGGCAGCTTGGCTGATCAATAGAGGACT
ATGGCATTGCAGAGACTGTGGAAAACAGACGTCTGTCAAGTCGGGAACGATCTTTCATCGTAGCCGCAAACCCATTAAATTGTGGTTTCGTGCCATGTGG
TACATCACAAATCAGAAGTATGGAGCCAATGCTCTTGGTCTTCAACGAGTTTTGGCGTTAGGCAGTTACCATACGGCGTGGGAATGGCTTCATAGGCTTA
GAAGAGCCATGGTCAGACCGGGGCGTGAACGCCTTTCTGGTTGCGTCCAAGTGGATGAAACCTATATCGGCGGCGCAAAGCCTGGCAAAAGAGGTCGTGG
AGCCCAGGGCAAAGCGCTCGTCGCAATCGCTGTGGAAGAACGTTCGCCCAAAGGAATTGGAAGAATCCGATTGGGCGTGATTCCAGATGCTTCTGCTGAG
AGTCTTACAGACTTTGTGATGAGGAATGTGGTGGAAGGCAGTATTATTAAAACAGATGACTGGCGTGGTTACACAGGCCTTTTTGGCGCGGGCTATCAAA
GGCAAATATTACCAAGTGAGCAGATGAAGCTGCCGCATTTGGTTGCATCCCTGCTTAAACGATGGTTATTGGGAACCTATCAGGGGGCAGTCAGGCCCAC
GCATTTGGAGTATTACCTGGATGAATATACTTTTCGGTTTAATCGACGCACCTCACGTAGCCGTGGAAAGTTGTTTTATCGGCTGGTTCAGCAATCGATT
TTGATCGATCCAATATCCGGTTCCGAATTGAAGGCTCCAACGGCGTGCCAGGAAAACGAGAACTTCGATAATCTTGGAGCACCTGAACCACAAGATATAG
GGGGCGCTTGAGTTAACTGCATACCCC
AAGAGGCTTGTCTGGCCTATCTTTCCGCCCTGCGATGGCCTAATGGCTTTGTATGCCCGCATTGCGAAGGCTCGGCAGCTTGGCTGATCAATAGAGGACT
ATGGCATTGCAGAGACTGTGGAAAACAGACGTCTGTCAAGTCGGGAACGATCTTTCATCGTAGCCGCAAACCCATTAAATTGTGGTTTCGTGCCATGTGG
TACATCACAAATCAGAAGTATGGAGCCAATGCTCTTGGTCTTCAACGAGTTTTGGCGTTAGGCAGTTACCATACGGCGTGGGAATGGCTTCATAGGCTTA
GAAGAGCCATGGTCAGACCGGGGCGTGAACGCCTTTCTGGTTGCGTCCAAGTGGATGAAACCTATATCGGCGGCGCAAAGCCTGGCAAAAGAGGTCGTGG
AGCCCAGGGCAAAGCGCTCGTCGCAATCGCTGTGGAAGAACGTTCGCCCAAAGGAATTGGAAGAATCCGATTGGGCGTGATTCCAGATGCTTCTGCTGAG
AGTCTTACAGACTTTGTGATGAGGAATGTGGTGGAAGGCAGTATTATTAAAACAGATGACTGGCGTGGTTACACAGGCCTTTTTGGCGCGGGCTATCAAA
GGCAAATATTACCAAGTGAGCAGATGAAGCTGCCGCATTTGGTTGCATCCCTGCTTAAACGATGGTTATTGGGAACCTATCAGGGGGCAGTCAGGCCCAC
GCATTTGGAGTATTACCTGGATGAATATACTTTTCGGTTTAATCGACGCACCTCACGTAGCCGTGGAAAGTTGTTTTATCGGCTGGTTCAGCAATCGATT
TTGATCGATCCAATATCCGGTTCCGAATTGAAGGCTCCAACGGCGTGCCAGGAAAACGAGAACTTCGATAATCTTGGAGCACCTGAACCACAAGATATAG
GGGGCGCTTGAGTTAACTGCATACCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 49 | 1011 | + | No |
Chemistry : DDE
ORF sequence :
MEDFPQTLSEFEDRFGTEEACLAYLSALRWPNGFVCPHCEGSAAWLINRGLWHCRDCGKQTSVKSGTIFHRSRKPIKLWFRAMWYITNQKYGANALGLQR
VLALGSYHTAWEWLHRLRRAMVRPGRERLSGCVQVDETYIGGAKPGKRGRGAQGKALVAIAVEERSPKGIGRIRLGVIPDASAESLTDFVMRNVVEGSII
KTDDWRGYTGLFGAGYQRQILPSEQMKLPHLVASLLKRWLLGTYQGAVRPTHLEYYLDEYTFRFNRRTSRSRGKLFYRLVQQSILIDPISGSELKAPTAC
QENENFDNLGAPEPQDIGGA
VLALGSYHTAWEWLHRLRRAMVRPGRERLSGCVQVDETYIGGAKPGKRGRGAQGKALVAIAVEERSPKGIGRIRLGVIPDASAESLTDFVMRNVVEGSII
KTDDWRGYTGLFGAGYQRQILPSEQMKLPHLVASLLKRWLLGTYQGAVRPTHLEYYLDEYTFRFNRRTSRSRGKLFYRLVQQSILIDPISGSELKAPTAC
QENENFDNLGAPEPQDIGGA
Blast result :
Comments
ISDal1 is 66% aa similar to ISPosp3.
The DR could be 10 or 12 bp.
The DR could be 10 or 12 bp.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Wawrik,B. and Richardson,P. (2007) Diret submission GenBank.