ISDal1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABII01000006 ND Desulfatibacillum alkenivorans
Desulfatibacillum alkenivorans AK-01
DNA section
IS Length : 1027 bp

Ends


IR Length : 20/21

IRL : GGGGTATGCACTTGACTCAAGTGACCACAATATGTAGTGTTGCGGGCCAT
IRR : GGGGTATGCAGTTAACTCAAGCGCCCCCTATATCTTGTGGTTCAGGTGCT

Insertion site


Left flankDirect repeatRight flankDR Length
CTTGAAAATCATGGTGGAAAATTGTAAATC/TTTTACATACAGTCCTTAACTT12

DNA sequence

GGGGTATGCACTTGACTCAAGTGACCACAATATGTAGTGTTGCGGGCCATGGAGGATTTCCCGCAGACATTGAGTGAGTTTGAGGACCGATTCGGAACGG
AAGAGGCTTGTCTGGCCTATCTTTCCGCCCTGCGATGGCCTAATGGCTTTGTATGCCCGCATTGCGAAGGCTCGGCAGCTTGGCTGATCAATAGAGGACT
ATGGCATTGCAGAGACTGTGGAAAACAGACGTCTGTCAAGTCGGGAACGATCTTTCATCGTAGCCGCAAACCCATTAAATTGTGGTTTCGTGCCATGTGG
TACATCACAAATCAGAAGTATGGAGCCAATGCTCTTGGTCTTCAACGAGTTTTGGCGTTAGGCAGTTACCATACGGCGTGGGAATGGCTTCATAGGCTTA
GAAGAGCCATGGTCAGACCGGGGCGTGAACGCCTTTCTGGTTGCGTCCAAGTGGATGAAACCTATATCGGCGGCGCAAAGCCTGGCAAAAGAGGTCGTGG
AGCCCAGGGCAAAGCGCTCGTCGCAATCGCTGTGGAAGAACGTTCGCCCAAAGGAATTGGAAGAATCCGATTGGGCGTGATTCCAGATGCTTCTGCTGAG
AGTCTTACAGACTTTGTGATGAGGAATGTGGTGGAAGGCAGTATTATTAAAACAGATGACTGGCGTGGTTACACAGGCCTTTTTGGCGCGGGCTATCAAA
GGCAAATATTACCAAGTGAGCAGATGAAGCTGCCGCATTTGGTTGCATCCCTGCTTAAACGATGGTTATTGGGAACCTATCAGGGGGCAGTCAGGCCCAC
GCATTTGGAGTATTACCTGGATGAATATACTTTTCGGTTTAATCGACGCACCTCACGTAGCCGTGGAAAGTTGTTTTATCGGCTGGTTCAGCAATCGATT
TTGATCGATCCAATATCCGGTTCCGAATTGAAGGCTCCAACGGCGTGCCAGGAAAACGAGAACTTCGATAATCTTGGAGCACCTGAACCACAAGATATAG
GGGGCGCTTGAGTTAACTGCATACCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa491011+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEDFPQTLSEFEDRFGTEEACLAYLSALRWPNGFVCPHCEGSAAWLINRGLWHCRDCGKQTSVKSGTIFHRSRKPIKLWFRAMWYITNQKYGANALGLQR
VLALGSYHTAWEWLHRLRRAMVRPGRERLSGCVQVDETYIGGAKPGKRGRGAQGKALVAIAVEERSPKGIGRIRLGVIPDASAESLTDFVMRNVVEGSII
KTDDWRGYTGLFGAGYQRQILPSEQMKLPHLVASLLKRWLLGTYQGAVRPTHLEYYLDEYTFRFNRRTSRSRGKLFYRLVQQSILIDPISGSELKAPTAC
QENENFDNLGAPEPQDIGGA

 

Blast result :
Comments
ISDal1 is 66% aa similar to ISPosp3.
The DR could be 10 or 12 bp.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Wawrik,B. and Richardson,P. (2007) Diret submission GenBank.