ISLar1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABCK01000011 ND Lentisphaera araneosa
Lentisphaera araneosa HTCC2155
DNA section
IS Length : 1039 bp

Ends


IR Length : 17

IRL : CACGATTAACCAGTTAAGAGTGTAAAACTTGATATAGCTATCTTTTAGTA
IRR : CACGATTAACCAGTTAACGATGCATTAAGGTAATCTACAGGTTTTTGCGA

Insertion site


Left flankDirect repeatRight flankDR Length
ATTAAACCTTAACAAAGAAATTTATAAATAAAT8

DNA sequence

CACGATTAACCAGTTAAGAGTGTAAAACTTGATATAGCTATCTTTTAGTAGCATATTAATTACATCTAATAAGGAGATGTATTATGCCTAAGAATAAAAT
TCAGTTTCAAGTTGGAGTTAGTTTTCCAGAATTCATCAAAACTTTTGGAACCGAGGATCAATGTAGTGCTTACTTGGAAAGCTGTAAGTGGCCTAATGGT
TTTAAATGTGAGACATGCGATAGTGATAAGTATTACCGCTATGAATCTGGAAGCCGCACCATCTTTCAATGTAAATCCTGCCGTAAAAACCATCGTTTAA
CAGCGGGCACTTTATTTCATCGTACGAAAGTTCCTCTACAGAAGTGGTTCTTAGCTCTGCATCAAATAAGCCAATCAAAGAACAGTGTTTCAGCATTAGA
ATTACACCGCCATATTGATGTGAATTATAAAACTGCCTGGTTAATAAAGCAGAAAATCATGCAGATGATGTATGAGCAAGACAGTAAGTATAAACTTAAA
GGTTTGGTTGAAATAGACGATGCTTACCTAGGTGGTCGACTGGAAGGAGGTAAACGAGGTAGAGGTTCAGAAAACAAATCTCCATTTATAGCGGCTGTGG
AAACTAACGAAAATCGAAATCCAGTTTTTGTTAAACTGAATCCTGTATCAAGTTTTTCTTATGAAGTGATTAAACAATGGGCTATAGATAATCTTGAGGA
GAACTGTGATACAATTTCAGACGGACTTAGAGGCTTCAGCGCCTTAAAAGAAGTAAGTAATCATAACGTTTTAGTTACTAGTAAAGCAAAGAAAGAAGAA
ATCGAAAGTACTTTTAAATGGGTGAATACCATTCTGAGTAATGTAAAAACTTCTATTTCTGGAACATTTCATTCACTAAAATTCGAGAAATACGGTTTCA
GGTATCTTGCTGATTTACAGTTTAGGCTCAACAGAAGATTTGACCTCAGAAAAATGTTTTTTGGACTGATTTCCAAAGCTATGACTACATCGCAAAAACC
TGTAGATTACCTTAATGCATCGTTAACTGGTTAATCGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp315 aa841034+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKNKIQFQVGVSFPEFIKTFGTEDQCSAYLESCKWPNGFKCETCDSDKYYRYESGSRTIFQCKSCRKNHRLTAGTLFHRTKVPLQKWFLALHQISQSKN
SVSALELHRHIDVNYKTAWLIKQKIMQMMYEQDSKYKLKGLVEIDDAYLGGRLEGGKRGRGSENKSPFIAAVETNENRNPVFVKLNPVSSFSYEVIKQWA
IDNLEENCDTISDGLRGFSALKEVSNHNVLVTSKAKKEEIESTFKWVNTILSNVKTSISGTFHSLKFEKYGFRYLALQFRLNRRFDLRKMFFGLISKAMT
TSQKPVDYLNASLTG

 

Blast result :
Comments
ISLar1 is 65% aa simialr to ISGur2.
References
1] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.