ISRhosp7
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008270 | ND | Rhodococcus sp. | Rhodococcus sp. RHA1 plasmid pRHL2 |
DNA section
IS Length : 1455 bp
Ends
Left end : CCCGTTACGTTATTTACGGTCCTTCGCAGAAGGGCTACGGTCGCCAGACCCGGTATGACTCGTTGCCCCCTGTCTCTCGCATGATCCGGGGGGTGGTGTC
Right end : GACGCCGCTGCGACGTCCTCTACGCCATGCTCAAGAACAAGGAACTCTACCGGAATCCAACCCCCTCAGCGGCTTGACGAAAACCATAGGGACACCCCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTGCAGCACGTGCTGC | GGTATTCGCCGCCGACA | 0 |
DNA sequence
CCCGTTACGTTATTTACGGTCCTTCGCAGAAGGGCTACGGTCGCCAGACCCGGTATGACTCGTTGCCCCCTGTCTCTCGCATGATCCGGGGGGTGGTGTC
GCCGGGTGTGGTGGCGTCGACGGACCGCTGATAGGGACAAGGCCAACCGAAATTGTGTAGGTCTCTTTGTAACGTGGGTGCCGGGCGTCGATGCCGGATC
GGCGACCGGCCGACCGAGACACAAGGGACGACCCCTGAATGGACTCGAACTATGCGGTGTACTGCGGAATCGACGTCGGCAAAGGTGAGCACCACGCCGT
CGGACTGACCGCCGCCGGAAAGAAGATCTACGACAAGGCGTTGCCGAATGACGAGACGAAGCTGCGGGCGGTCTTCGACCGCCTGGCCAGCCACGGATCG
GTGCTGGTGGTCGTCGACCAACCCAATACGATCGGCGCCCTACCGGTCACCGTGGCCCGCGTAGGCGGCCACGACGTCGGCTACCTGCCCGGACTGGCGA
TGCGCCGCATCGCCGACCTGTACCCCGGACAGGCGAAAACAGACGCCCGAGACGCCTTCATCATCGCCGATACCGCCCGCACCATGCCGCACACCCTGCG
CCGCGTCGACACCGGCGACGAGGCCCTCGCCGAACTCGAGGTCCTCGTCGGATTCGACGACGACCTCGCCGGCGAGGCCACCCGGGTCAGCAACCGCATC
CGCGGCCTGCTCACCTCCATCCACCCCGCCCTCGAGCGGGTCCTCGGCCCCCGCATCGCCCATCCGGCGGTGCTCGAGATCCTCTCCCGCTGCGGCGGGC
CGACCGGAATCCGGCAGGCCGGCAAGCGCAAGCTCACCGCGATCGCGGTCAAGCACGCACCCCGCATGGGCGCCCGATTGGCCACCGACATCCTTGCCGC
CCTCGATGAGCAGACCGTGGTGGTGCCCGGCACCGCGGCCGCCGAAACCGTTCTCCCCAAGCTCGCTGATTCACTGAAAGGGACTCTCCAGCAACGGAAA
GCAGTCGCCGAGGACGTGGAGAGGGCGCTCGATGAACACCCTCTTTCCCGGGTCCTGACCTCGATGCCCGGCATCGGCGTCAGGACAGCAGCTCGGATCC
TGATCGAGGTCGGCGACGGCTCCGCCTTCGCCTCCGCCGCGCACCTGGCGGCCTATGCCGGCATCGCACCGGTCACCCGTAAATCGGGCTCATCGATACG
TGGCGAGCACCCGGCCCGATCCGGCAACAAGAAGCTCAAACGAGCGCTGTTCCTGTCCGCGTTCTCCGCCCTCCACGACCCCACCAGTCGCGCCTACTAC
GACAAAAAGCGTGCCGAGAAGAAGAAGCACAACGCGGCCCTGATCTGCCTCGCCCGACGCCGCTGCGACGTCCTCTACGCCATGCTCAAGAACAAGGAAC
TCTACCGGAATCCAACCCCCTCAGCGGCTTGACGAAAACCATAGGGACACCCCCC
GCCGGGTGTGGTGGCGTCGACGGACCGCTGATAGGGACAAGGCCAACCGAAATTGTGTAGGTCTCTTTGTAACGTGGGTGCCGGGCGTCGATGCCGGATC
GGCGACCGGCCGACCGAGACACAAGGGACGACCCCTGAATGGACTCGAACTATGCGGTGTACTGCGGAATCGACGTCGGCAAAGGTGAGCACCACGCCGT
CGGACTGACCGCCGCCGGAAAGAAGATCTACGACAAGGCGTTGCCGAATGACGAGACGAAGCTGCGGGCGGTCTTCGACCGCCTGGCCAGCCACGGATCG
GTGCTGGTGGTCGTCGACCAACCCAATACGATCGGCGCCCTACCGGTCACCGTGGCCCGCGTAGGCGGCCACGACGTCGGCTACCTGCCCGGACTGGCGA
TGCGCCGCATCGCCGACCTGTACCCCGGACAGGCGAAAACAGACGCCCGAGACGCCTTCATCATCGCCGATACCGCCCGCACCATGCCGCACACCCTGCG
CCGCGTCGACACCGGCGACGAGGCCCTCGCCGAACTCGAGGTCCTCGTCGGATTCGACGACGACCTCGCCGGCGAGGCCACCCGGGTCAGCAACCGCATC
CGCGGCCTGCTCACCTCCATCCACCCCGCCCTCGAGCGGGTCCTCGGCCCCCGCATCGCCCATCCGGCGGTGCTCGAGATCCTCTCCCGCTGCGGCGGGC
CGACCGGAATCCGGCAGGCCGGCAAGCGCAAGCTCACCGCGATCGCGGTCAAGCACGCACCCCGCATGGGCGCCCGATTGGCCACCGACATCCTTGCCGC
CCTCGATGAGCAGACCGTGGTGGTGCCCGGCACCGCGGCCGCCGAAACCGTTCTCCCCAAGCTCGCTGATTCACTGAAAGGGACTCTCCAGCAACGGAAA
GCAGTCGCCGAGGACGTGGAGAGGGCGCTCGATGAACACCCTCTTTCCCGGGTCCTGACCTCGATGCCCGGCATCGGCGTCAGGACAGCAGCTCGGATCC
TGATCGAGGTCGGCGACGGCTCCGCCTTCGCCTCCGCCGCGCACCTGGCGGCCTATGCCGGCATCGCACCGGTCACCCGTAAATCGGGCTCATCGATACG
TGGCGAGCACCCGGCCCGATCCGGCAACAAGAAGCTCAAACGAGCGCTGTTCCTGTCCGCGTTCTCCGCCCTCCACGACCCCACCAGTCGCGCCTACTAC
GACAAAAAGCGTGCCGAGAAGAAGAAGCACAACGCGGCCCTGATCTGCCTCGCCCGACGCCGCTGCGACGTCCTCTACGCCATGCTCAAGAACAAGGAAC
TCTACCGGAATCCAACCCCCTCAGCGGCTTGACGAAAACCATAGGGACACCCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1194 bp | 397 aa | 239 | 1432 | + | No |
Chemistry : DEDD
ORF sequence :
MDSNYAVYCGIDVGKGEHHAVGLTAAGKKIYDKALPNDETKLRAVFDRLASHGSVLVVVDQPNTIGALPVTVARVGGHDVGYLPGLAMRRIADLYPGQAK
TDARDAFIIADTARTMPHTLRRVDTGDEALAELEVLVGFDDDLAGEATRVSNRIRGLLTSIHPALERVLGPRIAHPAVLEILSRCGGPTGIRQAGKRKLT
AIAVKHAPRMGARLATDILAALDEQTVVVPGTAAAETVLPKLADSLKGTLQQRKAVAEDVERALDEHPLSRVLTSMPGIGVRTAARILIEVGDGSAFASA
AHLAAYAGIAPVTRKSGSSIRGEHPARSGNKKLKRALFLSAFSALHDPTSRAYYDKKRAEKKKHNAALICLARRRCDVLYAMLKNKELYRNPTPSAA
TDARDAFIIADTARTMPHTLRRVDTGDEALAELEVLVGFDDDLAGEATRVSNRIRGLLTSIHPALERVLGPRIAHPAVLEILSRCGGPTGIRQAGKRKLT
AIAVKHAPRMGARLATDILAALDEQTVVVPGTAAAETVLPKLADSLKGTLQQRKAVAEDVERALDEHPLSRVLTSMPGIGVRTAARILIEVGDGSAFASA
AHLAAYAGIAPVTRKSGSSIRGEHPARSGNKKLKRALFLSAFSALHDPTSRAYYDKKRAEKKKHNAALICLARRRCDVLYAMLKNKELYRNPTPSAA
Blast result :
Comments
ISRhosp7 is 75% aa similar to ISSam1.
References
1] McLeod,M.P., Warren,R.L., Hsiao,W.W., Araki,N., Myhre,M., Fernandes,C., Miyazawa,D., Wong,W., Lillquist,A.L., Wang,D., Dosanjh,M., Hara,H., Petrescu,A., Morin,R.D., Yang,G., Stott,J.M., Schein,J.E., Shin,H., Smailus,D., Siddiqui,A.S., Marra,M.A., Jones,S.J., Holt,R., Brinkman,F.S., Miyauchi,K., Fukuda,M., Davies,J.E., Mohn,W.W. and Eltis,L.D. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15582-15587.