ISSam1
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM238663 | ND | Streptomyces ambofaciens | Streptomyces ambofaciens ATCC 23877 |
DNA section
IS Length : 1489 bp
Ends
Left end : CCCCGTTATCTTTTTCGCGGTCCTGCAAGAGGGCCGCTGGCCTCCGGGCCCGGCATGACTGTTGCCCCCTGTCGATGGGATGACCTGGGGGGTGGTGTCA
Right end : GCCATCGCATCAGCGTCCTGTTCGCCCTGCTCCGCGACGGAACCTTCTACGAGCCGAGGAGCCCTCGACTCGCTTGACGAAGGACATAGAGGCACCCCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCACGGCTCGGCCTGC | TGCCGGTCCTGACC | 0 |
DNA sequence
CCCCGTTATCTTTTTCGCGGTCCTGCAAGAGGGCCGCTGGCCTCCGGGCCCGGCATGACTGTTGCCCCCTGTCGATGGGATGACCTGGGGGGTGGTGTCA
CCGGGTCCGAGGGGTGCCGTCGGAGACGCTGATCAGAGGTCCGACCACCGTCCGGCCGGGCGCAATGCCAGGCCGCTCGCGGGCGGCAGGTCTGCATAAC
GTGGATGCGCGAGAACGGCTCCCGACCTTGAGGCCGGCACGCATCGACACATGTGGGGGCACGGTGATCAGCATCGACGGGGTGGGCGTCTTCCTGGGCC
TGGACGTCGGCAAGCAGACGCATCACGGCCACGGCCTGACCCCGGCCGGGAAGAAGGTGTTCGACAAGCAGCTGCCGAACAGCGAACCGAAGCTGCGGGC
TGTCTTCGACAAGCTCACGGCCAAGTTCGGCACCGTCCTGGTGATCGTGGACCAGCCCGCCTCCATCGGCGCCCTCCCACTGACCGTCGCCCGGGACGCC
GGCTGCCAGGTCGCCTACCTGCCCGGACTGGCGATGCGCCGGATCGCCGACCTCTACCCGGGCGAGGCCAAGACCGACGCGAAGGACGCCGCGGTCATTG
CGGACGCTGCCCGCACCATGCCCCACACCCTGCGCACCCTCGACCTGACCGATGAGGTCACCGCGGAGCTGACCATGCTGGTCGGCTTCGACCAGGACCT
CGCAGGCGAGGCCAACCGCACCTCCAACCGCATCCGCGGCCTGCTCACCCAGTTCCACCCCAGCCTGGAGCGCGTCCTCGGCCCGCGCCTGGACCATCCG
GCAGTGACCTGGCTCCTCGAGCGTTACGGATCCCCGCAAGCACTCCGCAAAGCGGGCCGCCGCAAGCTGGTCGAGGTCGTCCGCCCGAGAGCCCCGCGCA
TGGCCGAGCGGCTGGTCGACGACACCTTCACCGCACTCGACGAGCAGACCGTCGTCGTCCCGGGCACCGGCACCCTCGACGTGATCGTCCCGTCGCTGGC
GAAGTCGCTGGCCGCCGTTCACGAACAACGCCGGGCCCTGGAAACGCGGATTGAGGCACTGCTGGAGGCCCACCCTCTTTCCCAGGTCCTGACCTCGATG
CCCGGCATCGGCGTCAGGACCGCCGCAGTCCTCCTGGCCACCGTCGGCGACGGCAGCAGCTTTCCCACCGCCGCCCACCTGGCCTCCTACGCCGGCCTCG
CCCCGGTAACCCGGCAGTCCGGCACGTCGATCCACGGCGAGCACGCCCCCAGAGGCGGCAACCGGCAGCTGAAACGAGCGATGTTCCTCTCCGCGTTCGC
AGCCCTCCACGACCCCGCCTCCCGCACCTACTACGACCGCTGCCGAGCCCGCGGCAAAACCCACACCCAGGCCCTCCTCCGCCTCGCCCGCCATCGCATC
AGCGTCCTGTTCGCCCTGCTCCGCGACGGAACCTTCTACGAGCCGAGGAGCCCTCGACTCGCTTGACGAAGGACATAGAGGCACCCCCC
CCGGGTCCGAGGGGTGCCGTCGGAGACGCTGATCAGAGGTCCGACCACCGTCCGGCCGGGCGCAATGCCAGGCCGCTCGCGGGCGGCAGGTCTGCATAAC
GTGGATGCGCGAGAACGGCTCCCGACCTTGAGGCCGGCACGCATCGACACATGTGGGGGCACGGTGATCAGCATCGACGGGGTGGGCGTCTTCCTGGGCC
TGGACGTCGGCAAGCAGACGCATCACGGCCACGGCCTGACCCCGGCCGGGAAGAAGGTGTTCGACAAGCAGCTGCCGAACAGCGAACCGAAGCTGCGGGC
TGTCTTCGACAAGCTCACGGCCAAGTTCGGCACCGTCCTGGTGATCGTGGACCAGCCCGCCTCCATCGGCGCCCTCCCACTGACCGTCGCCCGGGACGCC
GGCTGCCAGGTCGCCTACCTGCCCGGACTGGCGATGCGCCGGATCGCCGACCTCTACCCGGGCGAGGCCAAGACCGACGCGAAGGACGCCGCGGTCATTG
CGGACGCTGCCCGCACCATGCCCCACACCCTGCGCACCCTCGACCTGACCGATGAGGTCACCGCGGAGCTGACCATGCTGGTCGGCTTCGACCAGGACCT
CGCAGGCGAGGCCAACCGCACCTCCAACCGCATCCGCGGCCTGCTCACCCAGTTCCACCCCAGCCTGGAGCGCGTCCTCGGCCCGCGCCTGGACCATCCG
GCAGTGACCTGGCTCCTCGAGCGTTACGGATCCCCGCAAGCACTCCGCAAAGCGGGCCGCCGCAAGCTGGTCGAGGTCGTCCGCCCGAGAGCCCCGCGCA
TGGCCGAGCGGCTGGTCGACGACACCTTCACCGCACTCGACGAGCAGACCGTCGTCGTCCCGGGCACCGGCACCCTCGACGTGATCGTCCCGTCGCTGGC
GAAGTCGCTGGCCGCCGTTCACGAACAACGCCGGGCCCTGGAAACGCGGATTGAGGCACTGCTGGAGGCCCACCCTCTTTCCCAGGTCCTGACCTCGATG
CCCGGCATCGGCGTCAGGACCGCCGCAGTCCTCCTGGCCACCGTCGGCGACGGCAGCAGCTTTCCCACCGCCGCCCACCTGGCCTCCTACGCCGGCCTCG
CCCCGGTAACCCGGCAGTCCGGCACGTCGATCCACGGCGAGCACGCCCCCAGAGGCGGCAACCGGCAGCTGAAACGAGCGATGTTCCTCTCCGCGTTCGC
AGCCCTCCACGACCCCGCCTCCCGCACCTACTACGACCGCTGCCGAGCCCGCGGCAAAACCCACACCCAGGCCCTCCTCCGCCTCGCCCGCCATCGCATC
AGCGTCCTGTTCGCCCTGCTCCGCGACGGAACCTTCTACGAGCCGAGGAGCCCTCGACTCGCTTGACGAAGGACATAGAGGCACCCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 264 | 1466 | + | No |
Chemistry : DEDD
ORF sequence :
MISIDGVGVFLGLDVGKQTHHGHGLTPAGKKVFDKQLPNSEPKLRAVFDKLTAKFGTVLVIVDQPASIGALPLTVARDAGCQVAYLPGLAMRRIADLYPG
EAKTDAKDAAVIADAARTMPHTLRTLDLTDEVTAELTMLVGFDQDLAGEANRTSNRIRGLLTQFHPSLERVLGPRLDHPAVTWLLERYGSPQALRKAGRR
KLVEVVRPRAPRMAERLVDDTFTALDEQTVVVPGTGTLDVIVPSLAKSLAAVHEQRRALETRIEALLEAHPLSQVLTSMPGIGVRTAAVLLATVGDGSSF
PTAAHLASYAGLAPVTRQSGTSIHGEHAPRGGNRQLKRAMFLSAFAALHDPASRTYYDRCRARGKTHTQALLRLARHRISVLFALLRDGTFYEPRSPRLA
EAKTDAKDAAVIADAARTMPHTLRTLDLTDEVTAELTMLVGFDQDLAGEANRTSNRIRGLLTQFHPSLERVLGPRLDHPAVTWLLERYGSPQALRKAGRR
KLVEVVRPRAPRMAERLVDDTFTALDEQTVVVPGTGTLDVIVPSLAKSLAAVHEQRRALETRIEALLEAHPLSQVLTSMPGIGVRTAAVLLATVGDGSSF
PTAAHLASYAGLAPVTRQSGTSIHGEHAPRGGNRQLKRAMFLSAFAALHDPASRTYYDRCRARGKTHTQALLRLARHRISVLFALLRDGTFYEPRSPRLA
Blast result :
Comments
ISSam1 is 92% aa similar to IS110.
References
1] Choulet,F., Aigle,B., Gallois,A., Mangenot,S., Gerbaud,C., Truong,C., Francou,F.X., Fourrier,C., Guerineau,M., Decaris,B., Barbe,V., Pernodet,J.L. and Leblond,P. (2006) Mol. Biol. Evol. 23 (12), 2361-2369.