ISSam1

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM238663 ND Streptomyces ambofaciens
Streptomyces ambofaciens ATCC 23877
DNA section
IS Length : 1489 bp

Ends


Left end : CCCCGTTATCTTTTTCGCGGTCCTGCAAGAGGGCCGCTGGCCTCCGGGCCCGGCATGACTGTTGCCCCCTGTCGATGGGATGACCTGGGGGGTGGTGTCA
Right end : GCCATCGCATCAGCGTCCTGTTCGCCCTGCTCCGCGACGGAACCTTCTACGAGCCGAGGAGCCCTCGACTCGCTTGACGAAGGACATAGAGGCACCCCCC

Insertion site


Left flankDirect repeatRight flankDR Length
ACCACGGCTCGGCCTGCTGCCGGTCCTGACC0

DNA sequence

CCCCGTTATCTTTTTCGCGGTCCTGCAAGAGGGCCGCTGGCCTCCGGGCCCGGCATGACTGTTGCCCCCTGTCGATGGGATGACCTGGGGGGTGGTGTCA
CCGGGTCCGAGGGGTGCCGTCGGAGACGCTGATCAGAGGTCCGACCACCGTCCGGCCGGGCGCAATGCCAGGCCGCTCGCGGGCGGCAGGTCTGCATAAC
GTGGATGCGCGAGAACGGCTCCCGACCTTGAGGCCGGCACGCATCGACACATGTGGGGGCACGGTGATCAGCATCGACGGGGTGGGCGTCTTCCTGGGCC
TGGACGTCGGCAAGCAGACGCATCACGGCCACGGCCTGACCCCGGCCGGGAAGAAGGTGTTCGACAAGCAGCTGCCGAACAGCGAACCGAAGCTGCGGGC
TGTCTTCGACAAGCTCACGGCCAAGTTCGGCACCGTCCTGGTGATCGTGGACCAGCCCGCCTCCATCGGCGCCCTCCCACTGACCGTCGCCCGGGACGCC
GGCTGCCAGGTCGCCTACCTGCCCGGACTGGCGATGCGCCGGATCGCCGACCTCTACCCGGGCGAGGCCAAGACCGACGCGAAGGACGCCGCGGTCATTG
CGGACGCTGCCCGCACCATGCCCCACACCCTGCGCACCCTCGACCTGACCGATGAGGTCACCGCGGAGCTGACCATGCTGGTCGGCTTCGACCAGGACCT
CGCAGGCGAGGCCAACCGCACCTCCAACCGCATCCGCGGCCTGCTCACCCAGTTCCACCCCAGCCTGGAGCGCGTCCTCGGCCCGCGCCTGGACCATCCG
GCAGTGACCTGGCTCCTCGAGCGTTACGGATCCCCGCAAGCACTCCGCAAAGCGGGCCGCCGCAAGCTGGTCGAGGTCGTCCGCCCGAGAGCCCCGCGCA
TGGCCGAGCGGCTGGTCGACGACACCTTCACCGCACTCGACGAGCAGACCGTCGTCGTCCCGGGCACCGGCACCCTCGACGTGATCGTCCCGTCGCTGGC
GAAGTCGCTGGCCGCCGTTCACGAACAACGCCGGGCCCTGGAAACGCGGATTGAGGCACTGCTGGAGGCCCACCCTCTTTCCCAGGTCCTGACCTCGATG
CCCGGCATCGGCGTCAGGACCGCCGCAGTCCTCCTGGCCACCGTCGGCGACGGCAGCAGCTTTCCCACCGCCGCCCACCTGGCCTCCTACGCCGGCCTCG
CCCCGGTAACCCGGCAGTCCGGCACGTCGATCCACGGCGAGCACGCCCCCAGAGGCGGCAACCGGCAGCTGAAACGAGCGATGTTCCTCTCCGCGTTCGC
AGCCCTCCACGACCCCGCCTCCCGCACCTACTACGACCGCTGCCGAGCCCGCGGCAAAACCCACACCCAGGCCCTCCTCCGCCTCGCCCGCCATCGCATC
AGCGTCCTGTTCGCCCTGCTCCGCGACGGAACCTTCTACGAGCCGAGGAGCCCTCGACTCGCTTGACGAAGGACATAGAGGCACCCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1203 bp400 aa2641466+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MISIDGVGVFLGLDVGKQTHHGHGLTPAGKKVFDKQLPNSEPKLRAVFDKLTAKFGTVLVIVDQPASIGALPLTVARDAGCQVAYLPGLAMRRIADLYPG
EAKTDAKDAAVIADAARTMPHTLRTLDLTDEVTAELTMLVGFDQDLAGEANRTSNRIRGLLTQFHPSLERVLGPRLDHPAVTWLLERYGSPQALRKAGRR
KLVEVVRPRAPRMAERLVDDTFTALDEQTVVVPGTGTLDVIVPSLAKSLAAVHEQRRALETRIEALLEAHPLSQVLTSMPGIGVRTAAVLLATVGDGSSF
PTAAHLASYAGLAPVTRQSGTSIHGEHAPRGGNRQLKRAMFLSAFAALHDPASRTYYDRCRARGKTHTQALLRLARHRISVLFALLRDGTFYEPRSPRLA

 

Blast result :
Comments
ISSam1 is 92% aa similar to IS110.
References
1] Choulet,F., Aigle,B., Gallois,A., Mangenot,S., Gerbaud,C., Truong,C., Francou,F.X., Fourrier,C., Guerineau,M., Decaris,B., Barbe,V., Pernodet,J.L. and Leblond,P. (2006) Mol. Biol. Evol. 23 (12), 2361-2369.