ISMha3

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DS264616 ND Mannheimia haemolytica
Mannheimia haemolytica PHL213
DNA section
IS Length : 719 bp

Ends


IR Length : 18

IRL : GGGGCTGTCCTAGATAACGACTAAAACTTCCATTTAGGTTAAGATAACCC
IRR : GGGGCTGTCCTAGATAACTAACCTAACCCCCCTTTAACCAATTGTTTTAA

Insertion site


Left flankDirect repeatRight flankDR Length
TGATCTGCCTTTTTATTTTAAAAGTAATATAACCGATA3

DNA sequence

GGGGCTGTCCTAGATAACGACTAAAACTTCCATTTAGGTTAAGATAACCCTATGAGAAAAAGTCGTCTAAGTCAGTACAAACAACATAAACTCATAGAGC
TGTTTGTAGCAGGCGTAATCGCTCGAACAGCCGCAGAGTTAGTGAATGTAAATAAAACCACCGCAGCCTATTATTTTCACCGTTTGCGATTGCTCATCTA
TCAACATAGCCCTCATTTGGAAATGTTTGAGGGAGAAATTGAGATTGATGAGAGCTATTTCGGCGGTCATCGCAAGGGTAAACGAGGTCGTGGTGCAGCA
GGCAAAACCGCCGTATTCGGGCTTTTAAAGCGTGACGGCAAGGTTTATACCGTAGTAGTGCCGAACACACAATCTGCTACACTTTTGCCGATTATTCGGG
AAAAGGTGAAGCCCGATAGCCTTGTTTACACCGATTTTTATCGAAGCTATGATGTGCTTGATGTGAGTGAATTTAACCATTTTCGTATCAATCACAGCAC
ACACTTCGCAGAAAATCAAAATCACATTAACGGAATTGAGAATTTTTGGAGTCAAGCAAAACGTCATTTACGCAAGTTTAATGGTATTCCGAAAGCCCAT
TTTGAGCTATATTTGAAAGAATGCGAATGGCGTTTTAATCACAGTGACTTAAAATCTCAAATATTCCTTTTAAAACAATTGGTTAAAGGGGGGTTAGGTT
AGTTATCTAGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
651 bp216 aa52702+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKSRLSQYKQHKLIELFVAGVIARTAAELVNVNKTTAAYYFHRLRLLIYQHSPHLEMFEGEIEIDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYT
VVVPNTQSATLLPIIREKVKPDSLVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHINGIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNHSDL
KSQIFLLKQLVKGGLG

 

Blast result :
Comments
ISMha3 is 96% aa imilar to ISMha2.
References
1] Gioia,J., Qin,X., Jiang,H., Clinkenbeard,K., Lo,R., Liu,Y., Fox,G.E., Yerrapragada,S., McLeod,M.P., McNeill,T.Z., Hemphill,L., Sodergren,E., Wang,Q., Muzny,D.M., Homsi,F.J., Weinstock,G.M. and Highlander,S.K.(2006) J. Bacteriol. 188 (20), 7257-7266