ISMha2

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DS264616 ND Mannheimia haemolytica
Mannheimia haemolytica PHL213
DNA section
IS Length : 719 bp

Ends


IR Length : 18

IRL : GGGGCTGTCCTAGATAACGACTAAAACATCCATTTAGGTTAAGATAACCC
IRR : GGGGCTGTCCTAGATAACTAACCTAACCCCCCTTTAACCAATTGTTTTAA

Insertion site


Left flankDirect repeatRight flankDR Length
CGAGTATTAAAAGTATAAATTTTGTAGTTGGA0
CAAACTACATACAAAAAATAATGGCATAAGTGA8

DNA sequence

GGGGCTGTCCTAGATAACGACTAAAACATCCATTTAGGTTAAGATAACCCAATGAGAAAAAGTCGTCTAAGTCAGTACAAACAACATAAACTCATTGAAC
TGTTTGTAGCAGGTGTCACTGCTCGAACAGCGGCTGAGTTGGTGAATGTAAACAAAACCACCGCTGCCTATTACTTTCACCGTTTGCGATTGCTCATCTA
TCAACATAGCCCTCATCTGGAAATGTTTGAGGGTGAAATTGAAGCGGACGAAAGTTATTTCGGTGGTGCTCGCAAAGGTAAACGAGGGTGTGGTGCCGCA
GGCAAAACTGCCGTATTTGGGCTGTTAAAACGTGATGACAAGGTTTATACCGTTGTCGTACCAAATACGCAATCTGCCACACTTTTGCCGATTATTCGGG
AGAAAGTGAAGCCAGACAGCCTTGTTTACGCCGATTTTTATCGAAGCTATGATGTGCTTGATGTGAGTGAATTTAACCATTTTCGTATCAATCACAGCAC
ACACTTCGCTGAAAATCACAATCACATTAACGGAATTGAGAATTTTTGGAGTCAAGCAAAACGTCATTTACGCAAGTTTAATGGTATTCCGAAAGCCCAT
TTTGAGCTATATTTGAAAGAATGCGAATGGCGTTTTAATCACAGTGACTTAAAATCTCAAATATTCCTTTTAAAACAATTGGTTAAAGGGGGGTTAGGTT
AGTTATCTAGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
651 bp216 aa52702+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKSRLSQYKQHKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRLLIYQHSPHLEMFEGEIEADESYFGGARKGKRGCGAAGKTAVFGLLKRDDKVYT
VVVPNTQSATLLPIIREKVKPDSLVYADFYRSYDVLDVSEFNHFRINHSTHFAENHNHINGIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNHSDL
KSQIFLLKQLVKGGLG

 

Blast result :
Comments
ISMha2 is 95% aa similar to ISHpa1.
References
1] Gioia,J., Qin,X., Jiang,H., Clinkenbeard,K., Lo,R., Liu,Y., Fox,G.E., Yerrapragada,S., McLeod,M.P., McNeill,T.Z., Hemphill,L., Sodergren,E., Wang,Q., Muzny,D.M., Homsi,F.J., Weinstock,G.M. and Highlander,S.K. (20006) J. Bacteriol. 188 (20), 7257-7266