ISBce16
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DQ889676 | ND | Bacillus cereus | Bacillus cereus AH187 plasmid pCER270 |
DNA section
IS Length : 2160 bp
Ends
IR Length : 35/50
IRL : TGAAAACAACGGTGGTAAAATCCCTAATAACAACGGTGTGAAATTCCCCA
IRR : TGTCAACAGCGGTTCTATTTTCCCTAATTTCAGCGGTCCAAAATTCCCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAATAATGATTTACT | TCTC | AATACTAATTTATCTAT | 4 |
DNA sequence
TGAAAACAACGGTGGTAAAATCCCTAATAACAACGGTGTGAAATTCCCCAATAATAACGGATAATTATCTCAAAAACAACTTGGAGTGTAGAGAGATAAT
GATCAAGGATGGGGAATTTTTTATGATTAAAGAGTATCACTCAAAAGGTTGGACTCAGATTGCTATAGCAGAATTAACAGGCTTTGATCCAAAAACAATA
CGAAAATACTTAAATCAAAATGAGTTACCAAAGAAAAAAAAACAACCTCACGGTAAATTGAAAACAAGCCTTTTAGATCCATATAAAGACTATTTATTAA
GACGGTTAAAGGAAGGTACCACTAACTGCGAAGTGCTTCTTGAGGAAATTCAATCTATGGGTTATCCAGGAAAGATGACTATTTTAAGAGATTTCATCAG
ACCTTATCGCCAGAAACCAAAGAAACAATCGAGTATCCGTTTTGAAACACCTCCTGGAAAGCAAGCACAGATGGACTGGGCAGAGATTGGAGAACATGAG
GTTGATGGGAAGAAACAAAAGCTTTATGTATTTATCATCGTTTTAGGTTACTCCCGTATGAAATACATGGAAATTACAAATACGATGAATATGGAGCAGC
TAATGAAATGCCACATGAATGCATTTGCCTATTTTAACGGCGTTCCTGAACACATACTCTATGACAATATGAAAACGGTAGTCACCTTACATAGTCCAAC
ACAAATACGTTTTAATCGAAAGTTCGAAGAATTCCTAGCTTACTATGGAGTTGTTCCGAAAGCGTGTAAACCAGCAAGACCACAAACCAAAGGGAAAGTA
GAAAGTGCGGTTGGTTACCTTAAGAAGAATTTTCTGCAAAGAAAACAAAAGAATACACTTCATGAGATGAATGAGATGTTAAGTGGATGGCTGGACAAAG
TGGCCAATAAAAAACCGAATCAAACGACGCTTGAGCCACCTCTACAGCGTTTTGAAGAGGAACAAAAACACTTATTACATTGGAATACGAGACCCTTATT
CCCAATAAGTAAATGGAAGGTTACTTACGTAACGGAAAGCAGCATGATTTCTTATAATGATCGAAACTATTCGGTTCCTTATCGTTATAAAGGGATGGAA
GTAAAGGTGAAGGAAACTCTTGATCATCATTTAGAGATCTATTTTGATCTAGAGTGCATCGCTACTCATCCGATTATTTCTGGGATCAATAAATCATTAA
CGGATATCAACCACATAAAGAACATAAAAAAAGAGCCAGATGTGACACAAAACGGTTTGGCGACCCGTCACATTCAGCCCTCTAATCATGAAGTGGAACA
ACGTTCACTTCACGTGTATGAAGAACAATTAAAAGCTGGTGATCACAAATGAACGCACAACTTATAACTGAACGTCTTAAGAAAGTTGGCTTGGTTTACA
TAGCCAATCAATTAGATGGCATCCTAGAAGATGCCTCTAAACATAATGTAACATATTCTGAATTTCTAAACACCCTTCTTCAACATGAAATTGAACACAA
AGAAGGTGCAGCACTAGAAACTAGAATAAAGAAATCAAAGCTACCGTTTCACAAGACTATCGAAGACTTTGACTTCTCATTTCAACCAAGTGTTAGCGAA
CGGCGTGTAAAAGAAGTAATAACTGGTCGTTATATTGAGAATGGAGAAAATATCTTATTATTAGGACCGCCAGGTGTTGGTAAAACCCACTTGGCGATAG
GTTTCGCTATCGAAGCACTTCGTCAAGGATACACAGCTTACTACACCCGGGCCGATGATTTCATTACTTCCTGCCGCAAGGCAGAACAAAGGGGAACCAC
TTCTCGCCTGGTCCGATCGTTAAGTAGGTGCGATGTACTCATAATTGATGAAATGGGATACTTTCCGTTTGATGAGTTAAGTGCAGATTTATTCTTTCGT
ATCATTTCAAAACGTTATGAAAAAGGGTCAATTATTTTAACCTCTAACAAATCGTATATTGAGTGGGGGAAAATATTTGGCGATGACGTCCTAGCAACAG
CGGTTTTGGATAGATTGTTGCATTACTCCACAACTTTCAATATCAAAGGACAATCATTTAGACTTCGTGAAAAGCAAAAAGCCGGCATACAACCGGCCGT
TAATTAGTAATAGGGAATTTTGGACCGCTGAAATTAGGGAAAATAGAACCGCTGTTGACA
GATCAAGGATGGGGAATTTTTTATGATTAAAGAGTATCACTCAAAAGGTTGGACTCAGATTGCTATAGCAGAATTAACAGGCTTTGATCCAAAAACAATA
CGAAAATACTTAAATCAAAATGAGTTACCAAAGAAAAAAAAACAACCTCACGGTAAATTGAAAACAAGCCTTTTAGATCCATATAAAGACTATTTATTAA
GACGGTTAAAGGAAGGTACCACTAACTGCGAAGTGCTTCTTGAGGAAATTCAATCTATGGGTTATCCAGGAAAGATGACTATTTTAAGAGATTTCATCAG
ACCTTATCGCCAGAAACCAAAGAAACAATCGAGTATCCGTTTTGAAACACCTCCTGGAAAGCAAGCACAGATGGACTGGGCAGAGATTGGAGAACATGAG
GTTGATGGGAAGAAACAAAAGCTTTATGTATTTATCATCGTTTTAGGTTACTCCCGTATGAAATACATGGAAATTACAAATACGATGAATATGGAGCAGC
TAATGAAATGCCACATGAATGCATTTGCCTATTTTAACGGCGTTCCTGAACACATACTCTATGACAATATGAAAACGGTAGTCACCTTACATAGTCCAAC
ACAAATACGTTTTAATCGAAAGTTCGAAGAATTCCTAGCTTACTATGGAGTTGTTCCGAAAGCGTGTAAACCAGCAAGACCACAAACCAAAGGGAAAGTA
GAAAGTGCGGTTGGTTACCTTAAGAAGAATTTTCTGCAAAGAAAACAAAAGAATACACTTCATGAGATGAATGAGATGTTAAGTGGATGGCTGGACAAAG
TGGCCAATAAAAAACCGAATCAAACGACGCTTGAGCCACCTCTACAGCGTTTTGAAGAGGAACAAAAACACTTATTACATTGGAATACGAGACCCTTATT
CCCAATAAGTAAATGGAAGGTTACTTACGTAACGGAAAGCAGCATGATTTCTTATAATGATCGAAACTATTCGGTTCCTTATCGTTATAAAGGGATGGAA
GTAAAGGTGAAGGAAACTCTTGATCATCATTTAGAGATCTATTTTGATCTAGAGTGCATCGCTACTCATCCGATTATTTCTGGGATCAATAAATCATTAA
CGGATATCAACCACATAAAGAACATAAAAAAAGAGCCAGATGTGACACAAAACGGTTTGGCGACCCGTCACATTCAGCCCTCTAATCATGAAGTGGAACA
ACGTTCACTTCACGTGTATGAAGAACAATTAAAAGCTGGTGATCACAAATGAACGCACAACTTATAACTGAACGTCTTAAGAAAGTTGGCTTGGTTTACA
TAGCCAATCAATTAGATGGCATCCTAGAAGATGCCTCTAAACATAATGTAACATATTCTGAATTTCTAAACACCCTTCTTCAACATGAAATTGAACACAA
AGAAGGTGCAGCACTAGAAACTAGAATAAAGAAATCAAAGCTACCGTTTCACAAGACTATCGAAGACTTTGACTTCTCATTTCAACCAAGTGTTAGCGAA
CGGCGTGTAAAAGAAGTAATAACTGGTCGTTATATTGAGAATGGAGAAAATATCTTATTATTAGGACCGCCAGGTGTTGGTAAAACCCACTTGGCGATAG
GTTTCGCTATCGAAGCACTTCGTCAAGGATACACAGCTTACTACACCCGGGCCGATGATTTCATTACTTCCTGCCGCAAGGCAGAACAAAGGGGAACCAC
TTCTCGCCTGGTCCGATCGTTAAGTAGGTGCGATGTACTCATAATTGATGAAATGGGATACTTTCCGTTTGATGAGTTAAGTGCAGATTTATTCTTTCGT
ATCATTTCAAAACGTTATGAAAAAGGGTCAATTATTTTAACCTCTAACAAATCGTATATTGAGTGGGGGAAAATATTTGGCGATGACGTCCTAGCAACAG
CGGTTTTGGATAGATTGTTGCATTACTCCACAACTTTCAATATCAAAGGACAATCATTTAGACTTCGTGAAAAGCAAAAAGCCGGCATACAACCGGCCGT
TAATTAGTAATAGGGAATTTTGGACCGCTGAAATTAGGGAAAATAGAACCGCTGTTGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 99 | 1352 | + | No |
Chemistry : DDE
ORF sequence :
MIKDGEFFMIKEYHSKGWTQIAIAELTGFDPKTIRKYLNQNELPKKKKQPHGKLKTSLLDPYKDYLLRRLKEGTTNCEVLLEEIQSMGYPGKMTILRDFI
RPYRQKPKKQSSIRFETPPGKQAQMDWAEIGEHEVDGKKQKLYVFIIVLGYSRMKYMEITNTMNMEQLMKCHMNAFAYFNGVPEHILYDNMKTVVTLHSP
TQIRFNRKFEEFLAYYGVVPKACKPARPQTKGKVESAVGYLKKNFLQRKQKNTLHEMNEMLSGWLDKVANKKPNQTTLEPPLQRFEEEQKHLLHWNTRPL
FPISKWKVTYVTESSMISYNDRNYSVPYRYKGMEVKVKETLDHHLEIYFDLECIATHPIISGINKSLTDINHIKNIKKEPDVTQNGLATRHIQPSNHEVE
QRSLHVYEEQLKAGDHK
RPYRQKPKKQSSIRFETPPGKQAQMDWAEIGEHEVDGKKQKLYVFIIVLGYSRMKYMEITNTMNMEQLMKCHMNAFAYFNGVPEHILYDNMKTVVTLHSP
TQIRFNRKFEEFLAYYGVVPKACKPARPQTKGKVESAVGYLKKNFLQRKQKNTLHEMNEMLSGWLDKVANKKPNQTTLEPPLQRFEEEQKHLLHWNTRPL
FPISKWKVTYVTESSMISYNDRNYSVPYRYKGMEVKVKETLDHHLEIYFDLECIATHPIISGINKSLTDINHIKNIKKEPDVTQNGLATRHIQPSNHEVE
QRSLHVYEEQLKAGDHK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
759 bp | 252 aa | 1349 | 2107 | + | No |
AG : IS21 helper
ORF sequence :
MNAQLITERLKKVGLVYIANQLDGILEDASKHNVTYSEFLNTLLQHEIEHKEGAALETRIKKSKLPFHKTIEDFDFSFQPSVSERRVKEVITGRYIENGE
NILLLGPPGVGKTHLAIGFAIEALRQGYTAYYTRADDFITSCRKAEQRGTTSRLVRSLSRCDVLIIDEMGYFPFDELSADLFFRIISKRYEKGSIILTSN
KSYIEWGKIFGDDVLATAVLDRLLHYSTTFNIKGQSFRLREKQKAGIQPAVN
NILLLGPPGVGKTHLAIGFAIEALRQGYTAYYTRADDFITSCRKAEQRGTTSRLVRSLSRCDVLIIDEMGYFPFDELSADLFFRIISKRYEKGSIILTSN
KSYIEWGKIFGDDVLATAVLDRLLHYSTTFNIKGQSFRLREKQKAGIQPAVN
Blast result :
Comments
ISBce16 is 60% (ORF1) aa similar to ISMac9 and 70% (ORF2) aa similar to IS5376.
L1 : TCCCTAAT
L2 : TCCCCAA
R1 : TCCCTAAT
R2 : TCCCTA
L1 : TCCCTAAT
L2 : TCCCCAA
R1 : TCCCTAAT
R2 : TCCCTA
References
1] Rasko,D.A., Rosovitz,M.J., Okstad,O.A., Fouts,D.E., Jiang,L., Cer,R.Z., Kolsto,A.B., Gill,S.R. and Ravel,J. (2007) J. Bacteriol. 189 (1), 52-64.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).