ISBcen28
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CH482377 | ND | Burkholderia cenocepacia | Burkholderia cenocepacia PC184 |
DNA section
IS Length : 2311 bp
Ends
IR Length : 35/50
IRL : TGTCAGCATCGGATAGATACTCCCCACTTTCGTCGAAGTAATTTTCCCCA
IRR : TGTCAACGTCGGACGTAATTTCCCCAGAAGTGTCGAAGTAAAATTCCCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGATGGTAGAAATA | GGAGC | TGCGCGCCAGGTCC | 5 |
DNA sequence
TGTCAGCATCGGATAGATACTCCCCACTTTCGTCGAAGTAATTTTCCCCAGTTTTTTGTCTGACGGCGCCGCGGTAGCGGCGCCGTCCTGTCGATCGCCG
ACCATATCGCCCTGGAGATCCGTCGTGGGGGTATCGGTGGTCGAGCTGGAGGAAGTAATGACGATTCTGGAATTGCATCGGCAAGGCCTGAGTATTTCGG
CCATCGCTGCTCGACTGGGTATGGACCGCAAGACCGTTCGTAAATACATCAGGAATGGCGTTCAGGCGCCACGTTACGGTCCGCGCGCACCGCGACCGTG
CGTGGTCGATCCGTTCGTCCACTACGTCACCGAACGTGTGCGCGAGTTTCCGGACCTGAGCGTCGAGCGTCTGCTGCGCGAGATTCGGGCCATGGGGTAT
ACCGGTGGCCGCACGGCGCTGGGCGATCTGGTTCGAGAGGTCCGGCCACCCCGCCAACGCGGTTTCGAGGTGCGCTTCGAGACGCCTGCCGGGCATCAAG
CGCAGGTGGATTTCGCCCACTTCAATGTCGAGTTCGGCGACGCGCCCGGCCTGCGACGTTCGATCTGGCTGTTCTCGATCGTGCTTGGACACAGCCGGTA
TCTCTGGGGACGTTTCGTCGAGCATCAGGACTTGCAGACGGTCCTGCGCTGCCACATGGAAGCGTTCGAGCATCTCGGCGGCGCTCCGCGCGAGATTCTG
TATGACCGGATGAAGGCGGCCGTGCTGGGCGAAGTCGAGAAGCACATCGTCTACAACGCGAAGCTGGTCGCGTTTGCGCAGCACTACGGCTTCGCGCCGC
GTGCCTGCAAAGCGTATCGAGCCAAGACCAAGGGCAAGGTCGAACGGCCGTATCGCTATATCCGGCAGGACTTCTTCCTGGCGCGCCGTTTCCAGAATCT
CGCCGACCTGAACCGACAGTTGCGCGAGTGGCTCGACACGGTGGCCAATGTGCGCATGCACGGCACGACGCACCGCGTCGTCGCCCAGCACTTCGGTGAG
GAGCGCCCCGCACTGCAGGCGTTGCCGGCCAGCACCTTCAACGGCGTGATCCGGCTCGAGCGTCGCGTGAGTCACGAAGGCCTCGTCTCGGTCGGCGGCA
ACTACTACAGCGTGCCCGATCGAACACGCAAGCGCACGCTCGACGTCCACAGTCTGGCCCACGAGATCCGCATCTACGAAGACGGTGAACTGCTTGCGGT
TCATCCCGTGCTCGAAGGCCGGCGACGAACCTCGCTGTTGCCCGGCCATCGGCGCGCAAATCAGCGCAAGCAGCCAGCACGACACCCATCACCATCGGTA
ACGGTAGCCGTAGCTCGCCGGCCTCTGTCGTTCTATGACCAGGTCGCAAGACGCCTCGCAGATGCCGGGAGGACCGCATGAGCAGCATGCCCGCCTCGAC
ACTGGAACGCATTCGACGCTATCTCGTCGGCTTGCGCATGCCGCGCGCGCTCGAAACGCTGGACGCCACCCTGAATCGTTTCGAGCAGGGCGACAGCTCA
ATGCTGGAAGTGTTGGAAACGCTGCTGGGCGAGGAGTTCACGACGCGCGAGACCCGCCGCATCCGGATGGCGCTGCAGACCGCGCGACTCGGCACGATCA
AGACGCTGGCTGGCTACGACTTCAGCTTCCAGCCGAGTCTCGACCGAGATCGCATCATGACGCTTGCGCAACTCGAGTTCATCGAACGACGACAGACCGT
ACACTTCCTGGGGCCGCCCGGCACGGGCAAATCGCACCTGTCCATTGCGCTGGGCGTCGAAGCCGTGCGCGCCGGCAAGAGCGTCTACTTCGGCTCGCTG
GCCGAGATCGTGAACTCGATGGCCAAGGCCGAGCGGGAAGGCAACCTGGCGCAGCGCGTGCGCTTCCTTGCCCGCAACAGCCTGCTCATCGTCGACGAGA
TTGGTTACCTGCCCATCGGCTCCAACGGCGGCAATCTGTTCTTCCAACTCGTCAACGCCTGCTACGAGCGCTGCGCGATCATCCTGACGTCCAATCGCAG
CTTCGGCGAATGGGGTGAAGTGTTCGGCGACAGCGTGGTCGCCGCGGCGCTGCTCGACCGGCTGCTGCACCACGCGATCGTCGTGCAGATCGAGGGCACG
TCGTACCGTCTGCGAGAACACGCCGATCTGCTGCCCGACCATCTGCGCAACCGACCGTCTTCCCTGAATCACACGCCCGCTGAACCGGTTCGTCGGCGCC
CGGGCCGTCCGCGAAGGAGCTCATCCGATCACCTCGCCGGCTGATCACCGTCCGAACAGGGTGGGGAATTTTACTTCGACACTTCTGGGGAAATTACGTC
CGACGTTGACA
ACCATATCGCCCTGGAGATCCGTCGTGGGGGTATCGGTGGTCGAGCTGGAGGAAGTAATGACGATTCTGGAATTGCATCGGCAAGGCCTGAGTATTTCGG
CCATCGCTGCTCGACTGGGTATGGACCGCAAGACCGTTCGTAAATACATCAGGAATGGCGTTCAGGCGCCACGTTACGGTCCGCGCGCACCGCGACCGTG
CGTGGTCGATCCGTTCGTCCACTACGTCACCGAACGTGTGCGCGAGTTTCCGGACCTGAGCGTCGAGCGTCTGCTGCGCGAGATTCGGGCCATGGGGTAT
ACCGGTGGCCGCACGGCGCTGGGCGATCTGGTTCGAGAGGTCCGGCCACCCCGCCAACGCGGTTTCGAGGTGCGCTTCGAGACGCCTGCCGGGCATCAAG
CGCAGGTGGATTTCGCCCACTTCAATGTCGAGTTCGGCGACGCGCCCGGCCTGCGACGTTCGATCTGGCTGTTCTCGATCGTGCTTGGACACAGCCGGTA
TCTCTGGGGACGTTTCGTCGAGCATCAGGACTTGCAGACGGTCCTGCGCTGCCACATGGAAGCGTTCGAGCATCTCGGCGGCGCTCCGCGCGAGATTCTG
TATGACCGGATGAAGGCGGCCGTGCTGGGCGAAGTCGAGAAGCACATCGTCTACAACGCGAAGCTGGTCGCGTTTGCGCAGCACTACGGCTTCGCGCCGC
GTGCCTGCAAAGCGTATCGAGCCAAGACCAAGGGCAAGGTCGAACGGCCGTATCGCTATATCCGGCAGGACTTCTTCCTGGCGCGCCGTTTCCAGAATCT
CGCCGACCTGAACCGACAGTTGCGCGAGTGGCTCGACACGGTGGCCAATGTGCGCATGCACGGCACGACGCACCGCGTCGTCGCCCAGCACTTCGGTGAG
GAGCGCCCCGCACTGCAGGCGTTGCCGGCCAGCACCTTCAACGGCGTGATCCGGCTCGAGCGTCGCGTGAGTCACGAAGGCCTCGTCTCGGTCGGCGGCA
ACTACTACAGCGTGCCCGATCGAACACGCAAGCGCACGCTCGACGTCCACAGTCTGGCCCACGAGATCCGCATCTACGAAGACGGTGAACTGCTTGCGGT
TCATCCCGTGCTCGAAGGCCGGCGACGAACCTCGCTGTTGCCCGGCCATCGGCGCGCAAATCAGCGCAAGCAGCCAGCACGACACCCATCACCATCGGTA
ACGGTAGCCGTAGCTCGCCGGCCTCTGTCGTTCTATGACCAGGTCGCAAGACGCCTCGCAGATGCCGGGAGGACCGCATGAGCAGCATGCCCGCCTCGAC
ACTGGAACGCATTCGACGCTATCTCGTCGGCTTGCGCATGCCGCGCGCGCTCGAAACGCTGGACGCCACCCTGAATCGTTTCGAGCAGGGCGACAGCTCA
ATGCTGGAAGTGTTGGAAACGCTGCTGGGCGAGGAGTTCACGACGCGCGAGACCCGCCGCATCCGGATGGCGCTGCAGACCGCGCGACTCGGCACGATCA
AGACGCTGGCTGGCTACGACTTCAGCTTCCAGCCGAGTCTCGACCGAGATCGCATCATGACGCTTGCGCAACTCGAGTTCATCGAACGACGACAGACCGT
ACACTTCCTGGGGCCGCCCGGCACGGGCAAATCGCACCTGTCCATTGCGCTGGGCGTCGAAGCCGTGCGCGCCGGCAAGAGCGTCTACTTCGGCTCGCTG
GCCGAGATCGTGAACTCGATGGCCAAGGCCGAGCGGGAAGGCAACCTGGCGCAGCGCGTGCGCTTCCTTGCCCGCAACAGCCTGCTCATCGTCGACGAGA
TTGGTTACCTGCCCATCGGCTCCAACGGCGGCAATCTGTTCTTCCAACTCGTCAACGCCTGCTACGAGCGCTGCGCGATCATCCTGACGTCCAATCGCAG
CTTCGGCGAATGGGGTGAAGTGTTCGGCGACAGCGTGGTCGCCGCGGCGCTGCTCGACCGGCTGCTGCACCACGCGATCGTCGTGCAGATCGAGGGCACG
TCGTACCGTCTGCGAGAACACGCCGATCTGCTGCCCGACCATCTGCGCAACCGACCGTCTTCCCTGAATCACACGCCCGCTGAACCGGTTCGTCGGCGCC
CGGGCCGTCCGCGAAGGAGCTCATCCGATCACCTCGCCGGCTGATCACCGTCCGAACAGGGTGGGGAATTTTACTTCGACACTTCTGGGGAAATTACGTC
CGACGTTGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 125 | 1381 | + | No |
Chemistry : DDE
ORF sequence :
MGVSVVELEEVMTILELHRQGLSISAIAARLGMDRKTVRKYIRNGVQAPRYGPRAPRPCVVDPFVHYVTERVREFPDLSVERLLREIRAMGYTGGRTALG
DLVREVRPPRQRGFEVRFETPAGHQAQVDFAHFNVEFGDAPGLRRSIWLFSIVLGHSRYLWGRFVEHQDLQTVLRCHMEAFEHLGGAPREILYDRMKAAV
LGEVEKHIVYNAKLVAFAQHYGFAPRACKAYRAKTKGKVERPYRYIRQDFFLARRFQNLADLNRQLREWLDTVANVRMHGTTHRVVAQHFGEERPALQAL
PASTFNGVIRLERRVSHEGLVSVGGNYYSVPDRTRKRTLDVHSLAHEIRIYEDGELLAVHPVLEGRRRTSLLPGHRRANQRKQPARHPSPSVTVAVARRP
LSFYDQVARRLADAGRTA
DLVREVRPPRQRGFEVRFETPAGHQAQVDFAHFNVEFGDAPGLRRSIWLFSIVLGHSRYLWGRFVEHQDLQTVLRCHMEAFEHLGGAPREILYDRMKAAV
LGEVEKHIVYNAKLVAFAQHYGFAPRACKAYRAKTKGKVERPYRYIRQDFFLARRFQNLADLNRQLREWLDTVANVRMHGTTHRVVAQHFGEERPALQAL
PASTFNGVIRLERRVSHEGLVSVGGNYYSVPDRTRKRTLDVHSLAHEIRIYEDGELLAVHPVLEGRRRTSLLPGHRRANQRKQPARHPSPSVTVAVARRP
LSFYDQVARRLADAGRTA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
867 bp | 288 aa | 1378 | 2244 | + | No |
AG : IS21 helper
ORF sequence :
MSSMPASTLERIRRYLVGLRMPRALETLDATLNRFEQGDSSMLEVLETLLGEEFTTRETRRIRMALQTARLGTIKTLAGYDFSFQPSLDRDRIMTLAQLE
FIERRQTVHFLGPPGTGKSHLSIALGVEAVRAGKSVYFGSLAEIVNSMAKAEREGNLAQRVRFLARNSLLIVDEIGYLPIGSNGGNLFFQLVNACYERCA
IILTSNRSFGEWGEVFGDSVVAAALLDRLLHHAIVVQIEGTSYRLREHADLLPDHLRNRPSSLNHTPAEPVRRRPGRPRRSSSDHLAG
FIERRQTVHFLGPPGTGKSHLSIALGVEAVRAGKSVYFGSLAEIVNSMAKAEREGNLAQRVRFLARNSLLIVDEIGYLPIGSNGGNLFFQLVNACYERCA
IILTSNRSFGEWGEVFGDSVVAAALLDRLLHHAIVVQIEGTSYRLREHADLLPDHLRNRPSSLNHTPAEPVRRRPGRPRRSSSDHLAG
Blast result :
Comments
ISBcen28 is 58%(ORF1) and 63%(ORFB) aa similar to ISMac3.
L1: TTTCCCCAG
R1: TTTCCCCAG
R2: TTCCCCA
L1: TTTCCCCAG
R1: TTTCCCCAG
R2: TTCCCCA
References
1] Birren,B., Lander,E., Galagan,J., Devon,K., Nusbaum,C., Borowsky,M.L., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., Rounsley,S., Young,S., LaButti,K., Pushparaj,V., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Kodira,C., Zeng,Q., Yandava,C., Oleary,S., Alvarado,L., Lory,S. and LiPuma,J. (2005) Direct Submission GenBank.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).