ISBsp2
- Family IS3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABCF01000006 | ND | Bacillus sp. | Bacillus sp. SG-1 |
DNA section
IS Length : 1459 bp
Ends
IR Length : 29/40
IRL : TGTACCCTATAGAGTAGACACTTAAAAAAGTCTACCTATAGGGTATTTTT
IRR : TGTACCCTTTGTAAAGGACATTTTAAAAAAGCCTAAGCTACTTTTAAAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGAATAAAA | CTTTAGAACG | 0 |
DNA sequence
TGTACCCTATAGAGTAGACACTTAAAAAAGTCTACCTATAGGGTATTTTTTTGTATAATGACAAATAGACAACTAGTAGAAATCGGGGAAAACACCATGA
GTAAAAAAACATTCACAGAGAAAGAAATCAAACAATTATCCATTAATCCTTTTGTGAAAGCTGTAAGTGCTAAGGGAATTACCTACACAGATGAATTTAA
ACGCCAATTTATCGCTGAGAAAGAGAAAGGCAAATTCTCTAGACAGATCTTTGAAGAGGCTGGATTTGATACAGATATAATTGGTATGGCACGTATTCAT
GCCGCTAGTAAGAGATGGAGTGCTGCTTATAAAAGAAACGGAGTTTTAGGGCTCAATGACACAAGGAAAGGCAATTCCGGGAGACCTAGAGAACGGGAGT
TATCCCTTGAGGATAAGAATGCTCGACTAGAAGCTCAAATTAACCTCCTTAAGGCGGAAAATGAACTTCTAAAAAAGATTCGATTCGCGGAAAGGGGGCT
AAAGAAGTAGTCCTCTCCCCAAGTCAAAAGTTCATTCTCATCCGTTCCGTAATAGAGAAATATAAGCTCAAAAAAATGGTGAGATTCCTTTGTGGGGTCG
CAGGAGTTTCCAGAAGTGCTTATTATAAATACTACTCTCCCGAGTCCCAAGAGCGTAGAAAACAACGGGAAGCAAGGGATGAGGAACTGAAAGAAATCAT
CTTAAAAGCATTCCGTCATAAGAATCGCAAGAAAGGGGCGCGTCAAATCAAAATGACTTTGGCGGGTCAATTTAAGATTGTCTTTAACTTGAAAAGAATT
CGAAGAATCATGAAGAAGTATAACATCGTTTGTCCCTTCCGGAGGGCGAATCCATATAGGCGTCTAATGAAGGCCACCCAGGAACATTCAGTGGTCCCTA
ACCTACTGGAGCGCCAATTCAATCAGGGTAAACCCGGGAAAGTGCTATTAACAGACATCACCTACTTGAGCTATGGAAAAAGTTCAAGAGCTTATTTATC
TATGATATTGGATGGTTCCAGTGGTGAAGCTCTTGCTTACCATGTGTCTGACAGAATGACTATGGAATTAGCCACAGATACCATCAAAAAACTAAAGAAA
AACAAAAGGTTTAAAAAACATAAAGACTCACTCATCCATTCAGATCAAGGGGTTCACTATACCCATCCCCAATTTCAGAAAATGGTTAAAAAACTTGGAA
TCCGCCAATCAATGTCCCGAAGGGGAAACTGTTGGGACAACGCTCCCATTGAATCGTTCTTTGGCCACCTGAAAGATGAAACCTCTATTAAAACCTGTCT
GACATTAGAGGATGTACAAAAGGAAATCAAGCAATACATGAATTACTATAACCACCATAGATACCAATGGAATCGAAAAAAGATGACCCCTGTACAATAC
AGAGATCATCTTTTAAAAGTAGCTTAGGCTTTTTTAAAATGTCCTTTACAAAGGGTACA
GTAAAAAAACATTCACAGAGAAAGAAATCAAACAATTATCCATTAATCCTTTTGTGAAAGCTGTAAGTGCTAAGGGAATTACCTACACAGATGAATTTAA
ACGCCAATTTATCGCTGAGAAAGAGAAAGGCAAATTCTCTAGACAGATCTTTGAAGAGGCTGGATTTGATACAGATATAATTGGTATGGCACGTATTCAT
GCCGCTAGTAAGAGATGGAGTGCTGCTTATAAAAGAAACGGAGTTTTAGGGCTCAATGACACAAGGAAAGGCAATTCCGGGAGACCTAGAGAACGGGAGT
TATCCCTTGAGGATAAGAATGCTCGACTAGAAGCTCAAATTAACCTCCTTAAGGCGGAAAATGAACTTCTAAAAAAGATTCGATTCGCGGAAAGGGGGCT
AAAGAAGTAGTCCTCTCCCCAAGTCAAAAGTTCATTCTCATCCGTTCCGTAATAGAGAAATATAAGCTCAAAAAAATGGTGAGATTCCTTTGTGGGGTCG
CAGGAGTTTCCAGAAGTGCTTATTATAAATACTACTCTCCCGAGTCCCAAGAGCGTAGAAAACAACGGGAAGCAAGGGATGAGGAACTGAAAGAAATCAT
CTTAAAAGCATTCCGTCATAAGAATCGCAAGAAAGGGGCGCGTCAAATCAAAATGACTTTGGCGGGTCAATTTAAGATTGTCTTTAACTTGAAAAGAATT
CGAAGAATCATGAAGAAGTATAACATCGTTTGTCCCTTCCGGAGGGCGAATCCATATAGGCGTCTAATGAAGGCCACCCAGGAACATTCAGTGGTCCCTA
ACCTACTGGAGCGCCAATTCAATCAGGGTAAACCCGGGAAAGTGCTATTAACAGACATCACCTACTTGAGCTATGGAAAAAGTTCAAGAGCTTATTTATC
TATGATATTGGATGGTTCCAGTGGTGAAGCTCTTGCTTACCATGTGTCTGACAGAATGACTATGGAATTAGCCACAGATACCATCAAAAAACTAAAGAAA
AACAAAAGGTTTAAAAAACATAAAGACTCACTCATCCATTCAGATCAAGGGGTTCACTATACCCATCCCCAATTTCAGAAAATGGTTAAAAAACTTGGAA
TCCGCCAATCAATGTCCCGAAGGGGAAACTGTTGGGACAACGCTCCCATTGAATCGTTCTTTGGCCACCTGAAAGATGAAACCTCTATTAAAACCTGTCT
GACATTAGAGGATGTACAAAAGGAAATCAAGCAATACATGAATTACTATAACCACCATAGATACCAATGGAATCGAAAAAAGATGACCCCTGTACAATAC
AGAGATCATCTTTTAAAAGTAGCTTAGGCTTTTTTAAAATGTCCTTTACAAAGGGTACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
453 bp | 150 aa | 58 | 510 | + | No |
Description : First part of the transposase
ORF sequence :
MTNRQLVEIGENTMSKKTFTEKEIKQLSINPFVKAVSAKGITYTDEFKRQFIAEKEKGKFSRQIFEEAGFDTDIIGMARIHAASKRWSAAYKRNGVLGLN
DTRKGNSGRPRERELSLEDKNARLEAQINLLKAENELLKKIRFAERGLKK
DTRKGNSGRPRERELSLEDKNARLEAQINLLKAENELLKKIRFAERGLKK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 465 | 1427 | + | No |
Description : Second part of the transposase
ORF sequence :
TSKKDSIRGKGAKEVVLSPSQKFILIRSVIEKYKLKKMVRFLCGVAGVSRSAYYKYYSPESQERRKQREARDEELKEIILKAFRHKNRKKGARQIKMTLA
GQFKIVFNLKRIRRIMKKYNIVCPFRRANPYRRLMKATQEHSVVPNLLERQFNQGKPGKVLLTDITYLSYGKSSRAYLSMILDGSSGEALAYHVSDRMTM
ELATDTIKKLKKNKRFKKHKDSLIHSDQGVHYTHPQFQKMVKKLGIRQSMSRRGNCWDNAPIESFFGHLKDETSIKTCLTLEDVQKEIKQYMNYYNHHRY
QWNRKKMTPVQYRDHLLKVA
GQFKIVFNLKRIRRIMKKYNIVCPFRRANPYRRLMKATQEHSVVPNLLERQFNQGKPGKVLLTDITYLSYGKSSRAYLSMILDGSSGEALAYHVSDRMTM
ELATDTIKKLKKNKRFKKHKDSLIHSDQGVHYTHPQFQKMVKKLGIRQSMSRRGNCWDNAPIESFFGHLKDETSIKTCLTLEDVQKEIKQYMNYYNHHRY
QWNRKKMTPVQYRDHLLKVA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1370 bp | 456 aa | 58 | 1427 | + | Yes |
Chemistry : DDE
ORF sequence :
MTNRQLVEIGENTMSKKTFTEKEIKQLSINPFVKAVSAKGITYTDEFKRQFIAEKEKGKFSRQIFEEAGFDTDIIGMARIHAASKRWSAAYKRNGVLGLN
DTRKGNSGRPRERELSLEDKNARLEAQINLLKAENELLKKDSIRGKGAKEVVLSPSQKFILIRSVIEKYKLKKMVRFLCGVAGVSRSAYYKYYSPESQER
RKQREARDEELKEIILKAFRHKNRKKGARQIKMTLAGQFKIVFNLKRIRRIMKKYNIVCPFRRANPYRRLMKATQEHSVVPNLLERQFNQGKPGKVLLTD
ITYLSYGKSSRAYLSMILDGSSGEALAYHVSDRMTMELATDTIKKLKKNKRFKKHKDSLIHSDQGVHYTHPQFQKMVKKLGIRQSMSRRGNCWDNAPIES
FFGHLKDETSIKTCLTLEDVQKEIKQYMNYYNHHRYQWNRKKMTPVQYRDHLLKVA
DTRKGNSGRPRERELSLEDKNARLEAQINLLKAENELLKKDSIRGKGAKEVVLSPSQKFILIRSVIEKYKLKKMVRFLCGVAGVSRSAYYKYYSPESQER
RKQREARDEELKEIILKAFRHKNRKKGARQIKMTLAGQFKIVFNLKRIRRIMKKYNIVCPFRRANPYRRLMKATQEHSVVPNLLERQFNQGKPGKVLLTD
ITYLSYGKSSRAYLSMILDGSSGEALAYHVSDRMTMELATDTIKKLKKNKRFKKHKDSLIHSDQGVHYTHPQFQKMVKKLGIRQSMSRRGNCWDNAPIES
FFGHLKDETSIKTCLTLEDVQKEIKQYMNYYNHHRYQWNRKKMTPVQYRDHLLKVA
Blast result :
Comments
Genome in progress.
ISBsp2 is 78 % (ORFA) and 76% (ORFB) aa similar to ISCpe6. The third ORF is a putative ORFAB transposase reconstructed in sillico by -1 frameshift.
ISBsp2 is 78 % (ORFA) and 76% (ORFB) aa similar to ISCpe6. The third ORF is a putative ORFAB transposase reconstructed in sillico by -1 frameshift.
References
1] Tebo,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C.(2007) Direct submission GenBank.