ISBmu6
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010087 | ND | Burkholderia multivorans | Burkholderia multivorans ATCC 17616 chromosome 3 |
DNA section
IS Length : 1145 bp
Ends
IR Length : 19/23
IRL : TGAACTGCACCCCAAAAGTTGGATACCGATCCAACCTTTGGGGTGTTTTT
IRR : TGAACTGACCCCGCAAAGTTGGACGGTTAAACACTAGGCGCCCAAGGGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAGCGCGGTATTT | AAAGGGCGCTTTTTTCGTTC | 0 |
DNA sequence
TGAACTGCACCCCAAAAGTTGGATACCGATCCAACCTTTGGGGTGTTTTTCATGACGAAGTACGACGAGCAATTCAAGCAACGGGTGGTCAGCGCATATT
TGCGTGGCGATAGTGGTTTTGACGCACTGGCAGCCCGTCACGGCATCCATTCCGGAATGTTGCAGCGTTGGGTTGCCGCGTATCGCGCGCATGGCCGTGC
GGGACTGCAGAGCAAATACAGTAGCTACGATGCACGGTTCAAGCTGCGGGTGTTGCAGCACATGCAGCGCGATGAGCTGTCCCTGCGTGAAGTCTCGGCG
CTGTATGACATTCGTGATGCGGGAAGTGTGGCCCGCTGGGCGCGTCTGTATGATGAAGGCGGTATAAACGCTTTGACGCCTCGGCCACGAGGGCGCCCCC
GAAAGATGGTCACATCACTTCCACCCAAGCCCACCGAAGCCGGCACACCGGATGAACGCTCGCGCGAGGAATTGCTCAAGGAAAACGAGTATCTGCGTGC
GGAGGTGGCATACCTAAAAAAGCTCGATGCGCTGCTGGCCAAGAAGCAGGCAGCGCAAAAGAAAAAACGCAAATAGTGCGCGAGCTCAGACAGCATCATC
CGGTGGCAGCGCTTCTGAAGGTGGCCGGTTTGGCGCGCAGCACGTTCTATTACCAGTTGGGGACGCTGAATGCCGACGATCGCCACGCTGATCTGAAGGC
AAAGATCCGGACGGTGTTCGAACATCACAAGGGACGCTACGGCTATCGACGCGTGACGGCTGCCATCCGGCAAGCCGGGTATCTCGTCAACCACAAGGCC
GTGCAGCGGCTGATGCAGCAATTGCAACTGAAGTCCCTGGTGCGCCCGAAGAAATATCGCTCTTGGCGAGGTGAGATCGGGCAGGCCGCACCCAATCTGC
TGCAACGTCAGTTCAGTGCCACGCAGGCCAACCAGAAGTGGGTAACGGACGTGACGGAGTTCAACGTCGGCGGGCAGAAGTTGTATCTATCGCCGGTGAT
GGATCTATACAACGGCGAGATCGTGGCTTACCAGATGGATCAACGTCCAAGCTTCGAACTGGTCAGCGGCATGCTGAAGAAGGCGCTGGCCAAGCTGCGG
CGCAAGGACAAACCGTTATTGCATTCGGATCAAGGCTGGCAATACCGGATGCCGGCGTATCGCCGGGAACTGAAGAAGCGCAAGCTGACCCAGAGCATGT
CGCGCAAGGGCAATTGCCTGGACAACGCCGCGATGGAAAGCTTCTTCGGCACGCTCAAGTCTGAGTGCTACAACGGGCATTGTTTCACTTGTGTAGAGCA
ATTGCGCGACACGCTGGACCACTACATCCACTACTACAACCACGAACGCATCAAGCTCAAATTGAAAGGGCTGAGTCCCGTGCAATACAGAACTCAGCCC
TTGGGCGCCTAGTGTTTAACCGTCCAACTTTGCGGGGTCAGTTCA
TGCGTGGCGATAGTGGTTTTGACGCACTGGCAGCCCGTCACGGCATCCATTCCGGAATGTTGCAGCGTTGGGTTGCCGCGTATCGCGCGCATGGCCGTGC
GGGACTGCAGAGCAAATACAGTAGCTACGATGCACGGTTCAAGCTGCGGGTGTTGCAGCACATGCAGCGCGATGAGCTGTCCCTGCGTGAAGTCTCGGCG
CTGTATGACATTCGTGATGCGGGAAGTGTGGCCCGCTGGGCGCGTCTGTATGATGAAGGCGGTATAAACGCTTTGACGCCTCGGCCACGAGGGCGCCCCC
GAAAGATGGTCACATCACTTCCACCCAAGCCCACCGAAGCCGGCACACCGGATGAACGCTCGCGCGAGGAATTGCTCAAGGAAAACGAGTATCTGCGTGC
GGAGGTGGCATACCTAAAAAAGCTCGATGCGCTGCTGGCCAAGAAGCAGGCAGCGCAAAAGAAAAAACGCAAATAGTGCGCGAGCTCAGACAGCATCATC
CGGTGGCAGCGCTTCTGAAGGTGGCCGGTTTGGCGCGCAGCACGTTCTATTACCAGTTGGGGACGCTGAATGCCGACGATCGCCACGCTGATCTGAAGGC
AAAGATCCGGACGGTGTTCGAACATCACAAGGGACGCTACGGCTATCGACGCGTGACGGCTGCCATCCGGCAAGCCGGGTATCTCGTCAACCACAAGGCC
GTGCAGCGGCTGATGCAGCAATTGCAACTGAAGTCCCTGGTGCGCCCGAAGAAATATCGCTCTTGGCGAGGTGAGATCGGGCAGGCCGCACCCAATCTGC
TGCAACGTCAGTTCAGTGCCACGCAGGCCAACCAGAAGTGGGTAACGGACGTGACGGAGTTCAACGTCGGCGGGCAGAAGTTGTATCTATCGCCGGTGAT
GGATCTATACAACGGCGAGATCGTGGCTTACCAGATGGATCAACGTCCAAGCTTCGAACTGGTCAGCGGCATGCTGAAGAAGGCGCTGGCCAAGCTGCGG
CGCAAGGACAAACCGTTATTGCATTCGGATCAAGGCTGGCAATACCGGATGCCGGCGTATCGCCGGGAACTGAAGAAGCGCAAGCTGACCCAGAGCATGT
CGCGCAAGGGCAATTGCCTGGACAACGCCGCGATGGAAAGCTTCTTCGGCACGCTCAAGTCTGAGTGCTACAACGGGCATTGTTTCACTTGTGTAGAGCA
ATTGCGCGACACGCTGGACCACTACATCCACTACTACAACCACGAACGCATCAAGCTCAAATTGAAAGGGCTGAGTCCCGTGCAATACAGAACTCAGCCC
TTGGGCGCCTAGTGTTTAACCGTCCAACTTTGCGGGGTCAGTTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
525 bp | 174 aa | 52 | 576 | + | No |
Description : First part of the transposase
ORF sequence :
MTKYDEQFKQRVVSAYLRGDSGFDALAARHGIHSGMLQRWVAAYRAHGRAGLQSKYSSYDARFKLRVLQHMQRDELSLREVSALYDIRDAGSVARWARLY
DEGGINALTPRPRGRPRKMVTSLPPKPTEAGTPDERSREELLKENEYLRAEVAYLKKLDALLAKKQAAQKKKRK
DEGGINALTPRPRGRPRKMVTSLPPKPTEAGTPDERSREELLKENEYLRAEVAYLKKLDALLAKKQAAQKKKRK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 456 | 1412 | + | No |
Description : Second part of the transposase
ORF sequence :
TLARGIAQGKRVSACGGGIPKKARCAAGQEAGSAKEKTQIVRELRQHHPVAALLKVAGLARSTFYYQLGTLNADDRHADLKAKIRTVFEHHKGRYGYRRV
TAAIRQAGYLVNHKAVQRLMQQLQLKSLVRPKKYRSWRGEIGQAAPNLLQRQFSATQANQKWVTDVTEFNVGGQKLYLSPVMDLYNGEIVAYQMDQRPSF
ELVSGMLKKALAKLRRKDKPLLHSDQGWQYRMPAYRRELKKRKLTQSMSRKGNCLDNAAMESFFGTLKSECYNGHCFTCVEQLRDTLDHYIHYYNHERIK
LKLKGLSPVQYRTQPLGA
TAAIRQAGYLVNHKAVQRLMQQLQLKSLVRPKKYRSWRGEIGQAAPNLLQRQFSATQANQKWVTDVTEFNVGGQKLYLSPVMDLYNGEIVAYQMDQRPSF
ELVSGMLKKALAKLRRKDKPLLHSDQGWQYRMPAYRRELKKRKLTQSMSRKGNCLDNAAMESFFGTLKSECYNGHCFTCVEQLRDTLDHYIHYYNHERIK
LKLKGLSPVQYRTQPLGA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1361 bp | 453 aa | 52 | 1412 | + | Yes |
Chemistry : DDE
ORF sequence :
MTKYDEQFKQRVVSAYLRGDSGFDALAARHGIHSGMLQRWVAAYRAHGRAGLQSKYSSYDARFKLRVLQHMQRDELSLREVSALYDIRDAGSVARWARLY
DEGGINALTPRPRGRPRKMVTSLPPKPTEAGTPDERSREELLKENEYLRAEVAYLKKARCAAGQEAGSAKEKTQIVRELRQHHPVAALLKVAGLARSTFY
YQLGTLNADDRHADLKAKIRTVFEHHKGRYGYRRVTAAIRQAGYLVNHKAVQRLMQQLQLKSLVRPKKYRSWRGEIGQAAPNLLQRQFSATQANQKWVTD
VTEFNVGGQKLYLSPVMDLYNGEIVAYQMDQRPSFELVSGMLKKALAKLRRKDKPLLHSDQGWQYRMPAYRRELKKRKLTQSMSRKGNCLDNAAMESFFG
TLKSECYNGHCFTCVEQLRDTLDHYIHYYNHERIKLKLKGLSPVQYRTQPLGA
DEGGINALTPRPRGRPRKMVTSLPPKPTEAGTPDERSREELLKENEYLRAEVAYLKKARCAAGQEAGSAKEKTQIVRELRQHHPVAALLKVAGLARSTFY
YQLGTLNADDRHADLKAKIRTVFEHHKGRYGYRRVTAAIRQAGYLVNHKAVQRLMQQLQLKSLVRPKKYRSWRGEIGQAAPNLLQRQFSATQANQKWVTD
VTEFNVGGQKLYLSPVMDLYNGEIVAYQMDQRPSFELVSGMLKKALAKLRRKDKPLLHSDQGWQYRMPAYRRELKKRKLTQSMSRKGNCLDNAAMESFFG
TLKSECYNGHCFTCVEQLRDTLDHYIHYYNHERIKLKLKGLSPVQYRTQPLGA
Blast result :
Comments
ISBmu6 is 97% aa similar to ISBcen16.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] NCBI Genome Project (2007) Direct Submission GenBank.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).