ISPlsp1
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009379 | ND | Polynucleobacter sp. | Polynucleobacter sp. QLW-P1DMWA-1 |
DNA section
IS Length : 1446 bp
Ends
IR Length : 22/24
IRL : TGAACTGCACCCCAAAAGTTGGACATCCGTCCAACCTAATCAGGTGCAGT
IRR : TGAACTGACCCCCAAAAGTTGGACGGTTTAGCTAGGTTAGCACGAGGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAAAAAAGACTGTC | ATTG | TTGGCAGTCTT | 4 |
DNA sequence
TGAACTGCACCCCAAAAGTTGGACATCCGTCCAACCTAATCAGGTGCAGTTTTCATGTCCAAATATAGCAAAGAGTTCAAGTTAACAGTCATACAGCATT
ATCTCTCCGGTAAGGGTGGCTTTAAAAACATTGGGGATCAATTTGGCGTTAAATACGCTTATGTGCGCAAATGGGTTCATGCTTTTAAGGCTCACGGTCA
AAAGAGTTTGAATAAAAGTGCCATCCAGTACTCCAGTATTTTTAAGTTATCCGTCTTGCAGCACATGGAACAACATCAGCTCTCGGTGAACCAAGCGGCA
ACCCACTTCAATATCCCAGCACCAAGCTCAGTACTAGCATGGCAACGCCTCTACAATGAAGGTGGTATTACAGCCCTAGAACCAAAACCCAAGGGACGGC
CACCCATGTCAAAACCTAGCGATATTAAGGCCTTGCTTGCCAAGCCCTTAACCTCACTTACGCATGAAGAGTTACTGCGCAAAGCGCAGTATTTGGAAGT
GGAGAACGCTTACCTAAAAAAGCTCGAAGCCTTAGCCCAGCAAAAGCACTTGGCAAGCAAGAACAAGCCCAAGTCATCACTGAGTTAAGGCAACACCATC
CATTGCAAGTTATTTTGCTGGCAGCCCAAATGCCTAAAAGCGTGTATTACTACTGGCAAAAAGCCAGTAGTAATACTGACCCCCATGCCAATGCCAAGAT
CGAGATCAAGGCCATCTTCAATACCCATCAGGGTCGCTATGGCTACCGGCGAGTCCATTTAGAGCTTCGCAATCGGGGGCAATACCTCAATCACAAGACA
GTACAAAAGCTCATGGGGCAACTTGGACTCAGGTCTATGGTTAGGCCTAAGCGCTATCAGTCCTACAAAGGAGGGGTTGGTAAGGCGGCCCCCAATTTGC
TAGAGCGCAACTTTAGAGCAAGTAAACCGAATCAAAAATGGGTCACTGATGTAACGGAGTTCAGCATCAGGGGGCAAAAGGTCTATCTCTCACCCATCCT
AGACCTTTATAACCAAGAGATCATCTCGTATGAGATTGGTGATCGGCCTCAACTGAGTATGGTGACTACCATGCTTAGCAGCGCTTTTAAACATCTCAAG
CAGGCTGATAAGCCGATGCTGCACTCAGACCAGGGCTGGCAATATCAGATGGGGTTTTATCAACAAGCCTTAAAGAAACAAGGTGTTACTCAAAGCATGT
CTAGAAAAGGTAATTGCTTAGATAACGCCGTGATGGAGAACTGGTTTGGGATTATGAAAACCGAGTTCTTCTATCCGAAGAGGTTTGAGACTATTGAATC
ATTTAAACAAGGGCTGCATGAATATATCCACTACTACAACCATGATCGGATCAAACAAAAACTAAAAGGATTGAGTCCGGTGCAATACCGAACTCAATCC
CTCGTGCTAACCTAGCTAAACCGTCCAACTTTTGGGGGTCAGTTCA
ATCTCTCCGGTAAGGGTGGCTTTAAAAACATTGGGGATCAATTTGGCGTTAAATACGCTTATGTGCGCAAATGGGTTCATGCTTTTAAGGCTCACGGTCA
AAAGAGTTTGAATAAAAGTGCCATCCAGTACTCCAGTATTTTTAAGTTATCCGTCTTGCAGCACATGGAACAACATCAGCTCTCGGTGAACCAAGCGGCA
ACCCACTTCAATATCCCAGCACCAAGCTCAGTACTAGCATGGCAACGCCTCTACAATGAAGGTGGTATTACAGCCCTAGAACCAAAACCCAAGGGACGGC
CACCCATGTCAAAACCTAGCGATATTAAGGCCTTGCTTGCCAAGCCCTTAACCTCACTTACGCATGAAGAGTTACTGCGCAAAGCGCAGTATTTGGAAGT
GGAGAACGCTTACCTAAAAAAGCTCGAAGCCTTAGCCCAGCAAAAGCACTTGGCAAGCAAGAACAAGCCCAAGTCATCACTGAGTTAAGGCAACACCATC
CATTGCAAGTTATTTTGCTGGCAGCCCAAATGCCTAAAAGCGTGTATTACTACTGGCAAAAAGCCAGTAGTAATACTGACCCCCATGCCAATGCCAAGAT
CGAGATCAAGGCCATCTTCAATACCCATCAGGGTCGCTATGGCTACCGGCGAGTCCATTTAGAGCTTCGCAATCGGGGGCAATACCTCAATCACAAGACA
GTACAAAAGCTCATGGGGCAACTTGGACTCAGGTCTATGGTTAGGCCTAAGCGCTATCAGTCCTACAAAGGAGGGGTTGGTAAGGCGGCCCCCAATTTGC
TAGAGCGCAACTTTAGAGCAAGTAAACCGAATCAAAAATGGGTCACTGATGTAACGGAGTTCAGCATCAGGGGGCAAAAGGTCTATCTCTCACCCATCCT
AGACCTTTATAACCAAGAGATCATCTCGTATGAGATTGGTGATCGGCCTCAACTGAGTATGGTGACTACCATGCTTAGCAGCGCTTTTAAACATCTCAAG
CAGGCTGATAAGCCGATGCTGCACTCAGACCAGGGCTGGCAATATCAGATGGGGTTTTATCAACAAGCCTTAAAGAAACAAGGTGTTACTCAAAGCATGT
CTAGAAAAGGTAATTGCTTAGATAACGCCGTGATGGAGAACTGGTTTGGGATTATGAAAACCGAGTTCTTCTATCCGAAGAGGTTTGAGACTATTGAATC
ATTTAAACAAGGGCTGCATGAATATATCCACTACTACAACCATGATCGGATCAAACAAAAACTAAAAGGATTGAGTCCGGTGCAATACCGAACTCAATCC
CTCGTGCTAACCTAGCTAAACCGTCCAACTTTTGGGGGTCAGTTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
534 bp | 177 aa | 55 | 588 | + | No |
Description : First part of the transposase
ORF sequence :
MSKYSKEFKLTVIQHYLSGKGGFKNIGDQFGVKYAYVRKWVHAFKAHGQKSLNKSAIQYSSIFKLSVLQHMEQHQLSVNQAATHFNIPAPSSVLAWQRLY
NEGGITALEPKPKGRPPMSKPSDIKALLAKPLTSLTHEELLRKAQYLEVENAYLKKLEALAQQKHLASKNKPKSSLS
NEGGITALEPKPKGRPPMSKPSDIKALLAKPLTSLTHEELLRKAQYLEVENAYLKKLEALAQQKHLASKNKPKSSLS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 468 | 1415 | + | No |
Description : Second part of the transposase
ORF sequence :
RVTAQSAVFGSGERLPKKARSLSPAKALGKQEQAQVITELRQHHPLQVILLAAQMPKSVYYYWQKASSNTDPHANAKIEIKAIFNTHQGRYGYRRVHLEL
RNRGQYLNHKTVQKLMGQLGLRSMVRPKRYQSYKGGVGKAAPNLLERNFRASKPNQKWVTDVTEFSIRGQKVYLSPILDLYNQEIISYEIGDRPQLSMVT
TMLSSAFKHLKQADKPMLHSDQGWQYQMGFYQQALKKQGVTQSMSRKGNCLDNAVMENWFGIMKTEFFYPKRFETIESFKQGLHEYIHYYNHDRIKQKLK
GLSPVQYRTQSLVLT
RNRGQYLNHKTVQKLMGQLGLRSMVRPKRYQSYKGGVGKAAPNLLERNFRASKPNQKWVTDVTEFSIRGQKVYLSPILDLYNQEIISYEIGDRPQLSMVT
TMLSSAFKHLKQADKPMLHSDQGWQYQMGFYQQALKKQGVTQSMSRKGNCLDNAVMENWFGIMKTEFFYPKRFETIESFKQGLHEYIHYYNHDRIKQKLK
GLSPVQYRTQSLVLT
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1361 bp | 453 aa | 55 | 1415 | + | Yes |
Chemistry : DDE
ORF sequence :
MSKYSKEFKLTVIQHYLSGKGGFKNIGDQFGVKYAYVRKWVHAFKAHGQKSLNKSAIQYSSIFKLSVLQHMEQHQLSVNQAATHFNIPAPSSVLAWQRLY
NEGGITALEPKPKGRPPMSKPSDIKALLAKPLTSLTHEELLRKAQYLEVENAYLKKARSLSPAKALGKQEQAQVITELRQHHPLQVILLAAQMPKSVYYY
WQKASSNTDPHANAKIEIKAIFNTHQGRYGYRRVHLELRNRGQYLNHKTVQKLMGQLGLRSMVRPKRYQSYKGGVGKAAPNLLERNFRASKPNQKWVTDV
TEFSIRGQKVYLSPILDLYNQEIISYEIGDRPQLSMVTTMLSSAFKHLKQADKPMLHSDQGWQYQMGFYQQALKKQGVTQSMSRKGNCLDNAVMENWFGI
MKTEFFYPKRFETIESFKQGLHEYIHYYNHDRIKQKLKGLSPVQYRTQSLVLT
NEGGITALEPKPKGRPPMSKPSDIKALLAKPLTSLTHEELLRKAQYLEVENAYLKKARSLSPAKALGKQEQAQVITELRQHHPLQVILLAAQMPKSVYYY
WQKASSNTDPHANAKIEIKAIFNTHQGRYGYRRVHLELRNRGQYLNHKTVQKLMGQLGLRSMVRPKRYQSYKGGVGKAAPNLLERNFRASKPNQKWVTDV
TEFSIRGQKVYLSPILDLYNQEIISYEIGDRPQLSMVTTMLSSAFKHLKQADKPMLHSDQGWQYQMGFYQQALKKQGVTQSMSRKGNCLDNAVMENWFGI
MKTEFFYPKRFETIESFKQGLHEYIHYYNHDRIKQKLKGLSPVQYRTQSLVLT
Blast result :
Comments
ISPlsp1 is 69% aa similar to ISBam1.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Meincke,L., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Poeckl,M., Wu,Q.L., Hahn,M. and Richardson,P. (2007) Direct Submission GenBank.