ISCgl3

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003450 ND Corynebacterium glutamicum
Corynebacterium glutamicum ATCC 13032
DNA section
IS Length : 846 bp

Ends


IR Length : 18/24

IRL : GCTGTTGTGGCGACGTCGGGGCAGTAGGATCCTCGGCGTGAAATAATTAA
IRR : GGTGCTGTTGCAAAGTTGGGCCAGGGTCGAAAAGCCCAACCTCAAGACAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GCTGTTGTGGCGACGTCGGGGCAGTAGGATCCTCGGCGTGAAATAATTAAGGCCATGAGTCTCTTCTCGGGTCGTCATTTCCCTCGCGAGATCCATCCTG
TGGGCGGTGCACAGGTCACTGCCGCTACGGGCTCAGCTGACCTAAGATCTCGAGGAAATGATGACTTCAGCGCGGAGTGCCGGTCGATCACACCACCATC
TACCGCTGGGTCCAGAAATACGCCCCTGAGCTGGATAAGCAGACTCGCTGGTACCGGCAGGTTCCTGACTGGCAGGCCAGTTCCTGGCGGGTGGATGAGA
CCTATATCCGGGTCGGCGGCACGTGGTGCTATCTCTACCGGGCTATTACCGCGGGTGGGCAGACCCTGGAGTTTTATCTCTCACCAAAACGGAATGTGGC
TGCGGCCAAGCGTTTCCTGGCCAAGACGCTGCGATCGAATACGACAGCCGGGTCCCCGCGGGTCATCAACACCGACAAGGCACCAGCTCTGGCCAAGGCA
ATATCCGAGCTGAAGGCGGAGGGAATCTGCCCTCAGACGGTGGAGCACCGGCAGGTGAAATACCTCAACAACGTTATCGAGGGAGATCATGGCCGACTCA
AAAGAATCCTGGGGCCGAAGGGAGCGTTCAAAAACCGAATTTCCGCCTACCGGACGTTGAAAGGGATGGAGGCGATGCATTCATTGCGGAAAGGGTCAGG
GAACGATGTTTGACCTCACGGGCACCCGAACCCAGACGCGGTGATCGTCAGCCGGATATTCGAGACAGCTTAAGCACCCCGGAGCAAGGACAACTAATGT
CTTGAGGTTGGGCTTTTCGACCCTGGCCCAACTTTGCAACAGCACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
537 bp178 aa177713+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPVDHTTIYRWVQKYAPELDKQTRWYRQVPDWQASSWRVDETYIRVGGTWCYLYRAITAGGQTLEFYLSPKRNVAAAKRFLAKTLRSNTTAGSPRVINTD
KAPALAKAISELKAEGICPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRISAYRTLKGMEAMHSLRKGSGNDV

 

Blast result :
Comments
ISCg13 is 96% aa similar to IS1628.
ISCg13 maybe form a composite transposon with ISCg12, with possible DR: TATTGGTAGTGCCATCA (CTGTGGAT) GATGCGTACATCCCTATCA
References
1] Ikeda,M. and Nakagawa,S. (2003) Appl. Microbiol. Biotechnol. 62 (2-3), 99-109