ISCgl3
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003450 | ND | Corynebacterium glutamicum | Corynebacterium glutamicum ATCC 13032 |
DNA section
IS Length : 846 bp
Ends
IR Length : 18/24
IRL : GCTGTTGTGGCGACGTCGGGGCAGTAGGATCCTCGGCGTGAAATAATTAA
IRR : GGTGCTGTTGCAAAGTTGGGCCAGGGTCGAAAAGCCCAACCTCAAGACAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GCTGTTGTGGCGACGTCGGGGCAGTAGGATCCTCGGCGTGAAATAATTAAGGCCATGAGTCTCTTCTCGGGTCGTCATTTCCCTCGCGAGATCCATCCTG
TGGGCGGTGCACAGGTCACTGCCGCTACGGGCTCAGCTGACCTAAGATCTCGAGGAAATGATGACTTCAGCGCGGAGTGCCGGTCGATCACACCACCATC
TACCGCTGGGTCCAGAAATACGCCCCTGAGCTGGATAAGCAGACTCGCTGGTACCGGCAGGTTCCTGACTGGCAGGCCAGTTCCTGGCGGGTGGATGAGA
CCTATATCCGGGTCGGCGGCACGTGGTGCTATCTCTACCGGGCTATTACCGCGGGTGGGCAGACCCTGGAGTTTTATCTCTCACCAAAACGGAATGTGGC
TGCGGCCAAGCGTTTCCTGGCCAAGACGCTGCGATCGAATACGACAGCCGGGTCCCCGCGGGTCATCAACACCGACAAGGCACCAGCTCTGGCCAAGGCA
ATATCCGAGCTGAAGGCGGAGGGAATCTGCCCTCAGACGGTGGAGCACCGGCAGGTGAAATACCTCAACAACGTTATCGAGGGAGATCATGGCCGACTCA
AAAGAATCCTGGGGCCGAAGGGAGCGTTCAAAAACCGAATTTCCGCCTACCGGACGTTGAAAGGGATGGAGGCGATGCATTCATTGCGGAAAGGGTCAGG
GAACGATGTTTGACCTCACGGGCACCCGAACCCAGACGCGGTGATCGTCAGCCGGATATTCGAGACAGCTTAAGCACCCCGGAGCAAGGACAACTAATGT
CTTGAGGTTGGGCTTTTCGACCCTGGCCCAACTTTGCAACAGCACC
TGGGCGGTGCACAGGTCACTGCCGCTACGGGCTCAGCTGACCTAAGATCTCGAGGAAATGATGACTTCAGCGCGGAGTGCCGGTCGATCACACCACCATC
TACCGCTGGGTCCAGAAATACGCCCCTGAGCTGGATAAGCAGACTCGCTGGTACCGGCAGGTTCCTGACTGGCAGGCCAGTTCCTGGCGGGTGGATGAGA
CCTATATCCGGGTCGGCGGCACGTGGTGCTATCTCTACCGGGCTATTACCGCGGGTGGGCAGACCCTGGAGTTTTATCTCTCACCAAAACGGAATGTGGC
TGCGGCCAAGCGTTTCCTGGCCAAGACGCTGCGATCGAATACGACAGCCGGGTCCCCGCGGGTCATCAACACCGACAAGGCACCAGCTCTGGCCAAGGCA
ATATCCGAGCTGAAGGCGGAGGGAATCTGCCCTCAGACGGTGGAGCACCGGCAGGTGAAATACCTCAACAACGTTATCGAGGGAGATCATGGCCGACTCA
AAAGAATCCTGGGGCCGAAGGGAGCGTTCAAAAACCGAATTTCCGCCTACCGGACGTTGAAAGGGATGGAGGCGATGCATTCATTGCGGAAAGGGTCAGG
GAACGATGTTTGACCTCACGGGCACCCGAACCCAGACGCGGTGATCGTCAGCCGGATATTCGAGACAGCTTAAGCACCCCGGAGCAAGGACAACTAATGT
CTTGAGGTTGGGCTTTTCGACCCTGGCCCAACTTTGCAACAGCACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
537 bp | 178 aa | 177 | 713 | + | No |
Chemistry : DDE
ORF sequence :
MPVDHTTIYRWVQKYAPELDKQTRWYRQVPDWQASSWRVDETYIRVGGTWCYLYRAITAGGQTLEFYLSPKRNVAAAKRFLAKTLRSNTTAGSPRVINTD
KAPALAKAISELKAEGICPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRISAYRTLKGMEAMHSLRKGSGNDV
KAPALAKAISELKAEGICPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRISAYRTLKGMEAMHSLRKGSGNDV
Blast result :
Comments
ISCg13 is 96% aa similar to IS1628.
ISCg13 maybe form a composite transposon with ISCg12, with possible DR: TATTGGTAGTGCCATCA (CTGTGGAT) GATGCGTACATCCCTATCA
ISCg13 maybe form a composite transposon with ISCg12, with possible DR: TATTGGTAGTGCCATCA (CTGTGGAT) GATGCGTACATCCCTATCA
References
1] Ikeda,M. and Nakagawa,S. (2003) Appl. Microbiol. Biotechnol. 62 (2-3), 99-109