ISMtsp2

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABAY01000047 ND Methylobacterium sp.
Methylobacterium sp. 4-46
DNA section
IS Length : 894 bp

Ends


IR Length : 16/18

IRL : GGGCCTGTCGCAAACACGAACGGGCCCGCGTTCACGGGTCGTTAGCCATA
IRR : GGGCGTGTCGCAAACCCGGCTGTGAGGCGCAGAAGGGCGTCTACCGCCCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGAGGGCTGTCTGCTCCACCGGCGCGGATCAGGCCGCTAC0

DNA sequence

GGGCCTGTCGCAAACACGAACGGGCCCGCGTTCACGGGTCGTTAGCCATAGCCGCCCAGCTTGCCGCCTCCGCCTCGGAGCCGGCCCATGATCCTCAACG
CCGTCGCCCTCAAGCTGAAGCGACAGGCCCGCGGCGACTTCCGGGGCCGGCACTTCGAAGCCACCCTGATCGTCCAAGCCGTCTCCTGGTCCCTGCGCTA
CGCCCTCAGCTACCGCGACATCGAGGAGATGCTGCTGGAGCGGGGCATGGAGGTGGATCACTCCACCATCAATCGCTGGGTGCTGTCCTACGCGCCCGCC
ATCGAACGGCGACTTCGCCGCTTCCGCAAGCCGCATTGCGGGACCGTGCGCGTGGACGAGACCTACATCAAGGTGCGGGGTCAGTGGCGCTACCTCTACC
GGGCCATCGACAAGCACGGGCAGGCGATCGACTTCCTGCTCACCGCCAATCGCGACCTGGAGGCCGCCAAGCGCTTCTTCCGCAAGATGCTGCAGGATCA
GCCACTGCTTGCCCCTGACCGCATCGGCACGGACGGCGCTGGCCCGTACCCGCCGGCGATCGCGGAGAGCCGCAAGGAGGGCCTGCTGCCACGGGCACCG
ACCCACCATGTCACCAAGCACCTGCAGCAGGGGATCGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCGCGGGTGGGCGGCTTCCGTTCGTTCCACA
CGGCCCGCCGCACGATCTGCGGCTTTGAGGCGATGCTGTGGCTGCGCAAGGGCTTCGGCTTTGCCGGCGCGTGGACCGTGCGCGAGCAGAACCAGCTCCT
CGCCTGCTGCTTTGGTCTTCTCGTCGCGAACAAAGTGTGAAAGCGGGGCGGTAGACGCCCTTCTGCGCCTCACAGCCGGGTTTGCGACACGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
753 bp250 aa88840+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MILNAVALKLKRQARGDFRGRHFEATLIVQAVSWSLRYALSYRDIEEMLLERGMEVDHSTINRWVLSYAPAIERRLRRFRKPHCGTVRVDETYIKVRGQW
RYLYRAIDKHGQAIDFLLTANRDLEAAKRFFRKMLQDQPLLAPDRIGTDGAGPYPPAIAESRKEGLLPRAPTHHVTKHLQQGIESDHFRVKRPMPRVGGF
RSFHTARRTICGFEAMLWLRKGFGFAGAWTVREQNQLLACCFGLLVANKV

 

Blast result :
Comments
ISMtsp2 is 97% aa similar to ISMtsp1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Marx,C.J. and Richardson,P. (2007) Direct submission GenBank.