ISCgl2
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003450 | ND | Corynebacterium glutamicum | Corynebacterium glutamicum ATCC 13032 |
DNA section
IS Length : 843 bp
Ends
IR Length : 22/24
IRL : GGTGTTGTTGCAAAGTTGGGGCAGTAGAAAGACCGGCGTGAAATAATCAG
IRR : GGTGCTGTTGCAAAGTTGGGCCAGGGTCGAAAAGCCCAACCTCAAGACAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTGTTGTTGCAAAGTTGGGGCAGTAGAAAGACCGGCGTGAAATAATCAGAGCCATGGGCATCTTCTCCGGTCGGCATTTCCCTCGCGAGATCCATCCTG
TGGGCGGTGCGGTGGTACTGCCGCTACGGGGTGAGCTGACCTAAGATCTCGAAGAGATGATGACTGAACGTGGTGTGCCAGTCGATCACACCACCATCTA
CCGCTGGGTCCAGAAATACGCCCCTGAGCTGGATAAGCAGACTCGCTGGTACCGGCAGGTTCCTGACTGGCAGGCCAGTTCCTGGCGGGTGGATGAGACC
TATATCCGGGTCGGCGGCACGTGGTGCTATCTCTACCGGGCTATTACCGCGGGTGGGCAGACCCTGGAGTTTTATCTCTCACCAAAACGGAATGTGGCTG
CGGCCAAGCGTTTCCTGGCCAAGACGCTGCGATCGAATACGACAGCCGGGTCCCCGCGGGTCATCAACACCGACAAGGCACCAGCTCTGGCCAAGGCAAT
ATCCGAGCTGAAGGCGGAGGGAATCTGCCCTCAGACGGTGGAGCACCGGCAGGTGAAATACCTCAACAACGTTATCGAGGGAGATCATGGCCGACTTAAA
AGAATCCTGGGGCCGAAGGGAGCGTTCAAAAACCGAATTTCCGCCTACCGGACGTTGAAAGGGATGGAAGCGATGCATTCATTACGGAAAGGCCAGGGCA
CGATGTTTGACCTCACGGGCACCCGAACCCAGACGCGGTGATCGTCAGCCGGATATTCGAGACAGCTTAAGCACCCCGGAGCAAGGACAACTAATGTCTT
GAGGTTGGGCTTTTCGACCCTGGCCCAACTTTGCAACAGCACC
TGGGCGGTGCGGTGGTACTGCCGCTACGGGGTGAGCTGACCTAAGATCTCGAAGAGATGATGACTGAACGTGGTGTGCCAGTCGATCACACCACCATCTA
CCGCTGGGTCCAGAAATACGCCCCTGAGCTGGATAAGCAGACTCGCTGGTACCGGCAGGTTCCTGACTGGCAGGCCAGTTCCTGGCGGGTGGATGAGACC
TATATCCGGGTCGGCGGCACGTGGTGCTATCTCTACCGGGCTATTACCGCGGGTGGGCAGACCCTGGAGTTTTATCTCTCACCAAAACGGAATGTGGCTG
CGGCCAAGCGTTTCCTGGCCAAGACGCTGCGATCGAATACGACAGCCGGGTCCCCGCGGGTCATCAACACCGACAAGGCACCAGCTCTGGCCAAGGCAAT
ATCCGAGCTGAAGGCGGAGGGAATCTGCCCTCAGACGGTGGAGCACCGGCAGGTGAAATACCTCAACAACGTTATCGAGGGAGATCATGGCCGACTTAAA
AGAATCCTGGGGCCGAAGGGAGCGTTCAAAAACCGAATTTCCGCCTACCGGACGTTGAAAGGGATGGAAGCGATGCATTCATTACGGAAAGGCCAGGGCA
CGATGTTTGACCTCACGGGCACCCGAACCCAGACGCGGTGATCGTCAGCCGGATATTCGAGACAGCTTAAGCACCCCGGAGCAAGGACAACTAATGTCTT
GAGGTTGGGCTTTTCGACCCTGGCCCAACTTTGCAACAGCACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
582 bp | 193 aa | 160 | 741 | + | No |
Chemistry : DDE
ORF sequence :
MTERGVPVDHTTIYRWVQKYAPELDKQTRWYRQVPDWQASSWRVDETYIRVGGTWCYLYRAITAGGQTLEFYLSPKRNVAAAKRFLAKTLRSNTTAGSPR
VINTDKAPALAKAISELKAEGICPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRISAYRTLKGMEAMHSLRKGQGTMFDLTGTRTQTR
VINTDKAPALAKAISELKAEGICPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRISAYRTLKGMEAMHSLRKGQGTMFDLTGTRTQTR
Blast result :
Comments
ISCg12 is 96% aa similar to IS1628.
ISCgl2 maybe form a composite transposon with ISCgl3, with possible DR:
TATTGGTAGTGCCATCA (CTGTGGAT) GATGCGTACATCCCTATCA
ISCgl2 maybe form a composite transposon with ISCgl3, with possible DR:
TATTGGTAGTGCCATCA (CTGTGGAT) GATGCGTACATCCCTATCA
References
1] Ikeda,M. and Nakagawa,S. (2003) Appl. Microbiol. Biotechnol. 62 (2-3), 99-109.