ISCgl2

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003450 ND Corynebacterium glutamicum
Corynebacterium glutamicum ATCC 13032
DNA section
IS Length : 843 bp

Ends


IR Length : 22/24

IRL : GGTGTTGTTGCAAAGTTGGGGCAGTAGAAAGACCGGCGTGAAATAATCAG
IRR : GGTGCTGTTGCAAAGTTGGGCCAGGGTCGAAAAGCCCAACCTCAAGACAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTGTTGTTGCAAAGTTGGGGCAGTAGAAAGACCGGCGTGAAATAATCAGAGCCATGGGCATCTTCTCCGGTCGGCATTTCCCTCGCGAGATCCATCCTG
TGGGCGGTGCGGTGGTACTGCCGCTACGGGGTGAGCTGACCTAAGATCTCGAAGAGATGATGACTGAACGTGGTGTGCCAGTCGATCACACCACCATCTA
CCGCTGGGTCCAGAAATACGCCCCTGAGCTGGATAAGCAGACTCGCTGGTACCGGCAGGTTCCTGACTGGCAGGCCAGTTCCTGGCGGGTGGATGAGACC
TATATCCGGGTCGGCGGCACGTGGTGCTATCTCTACCGGGCTATTACCGCGGGTGGGCAGACCCTGGAGTTTTATCTCTCACCAAAACGGAATGTGGCTG
CGGCCAAGCGTTTCCTGGCCAAGACGCTGCGATCGAATACGACAGCCGGGTCCCCGCGGGTCATCAACACCGACAAGGCACCAGCTCTGGCCAAGGCAAT
ATCCGAGCTGAAGGCGGAGGGAATCTGCCCTCAGACGGTGGAGCACCGGCAGGTGAAATACCTCAACAACGTTATCGAGGGAGATCATGGCCGACTTAAA
AGAATCCTGGGGCCGAAGGGAGCGTTCAAAAACCGAATTTCCGCCTACCGGACGTTGAAAGGGATGGAAGCGATGCATTCATTACGGAAAGGCCAGGGCA
CGATGTTTGACCTCACGGGCACCCGAACCCAGACGCGGTGATCGTCAGCCGGATATTCGAGACAGCTTAAGCACCCCGGAGCAAGGACAACTAATGTCTT
GAGGTTGGGCTTTTCGACCCTGGCCCAACTTTGCAACAGCACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
582 bp193 aa160741+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTERGVPVDHTTIYRWVQKYAPELDKQTRWYRQVPDWQASSWRVDETYIRVGGTWCYLYRAITAGGQTLEFYLSPKRNVAAAKRFLAKTLRSNTTAGSPR
VINTDKAPALAKAISELKAEGICPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRISAYRTLKGMEAMHSLRKGQGTMFDLTGTRTQTR

 

Blast result :
Comments
ISCg12 is 96% aa similar to IS1628.
ISCgl2 maybe form a composite transposon with ISCgl3, with possible DR:
TATTGGTAGTGCCATCA (CTGTGGAT) GATGCGTACATCCCTATCA
References
1] Ikeda,M. and Nakagawa,S. (2003) Appl. Microbiol. Biotechnol. 62 (2-3), 99-109.