ISCro2

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Citrobacter rodentium
Citrobacter rodentium
DNA section
IS Length : 1281 bp

Ends


IR Length : 18/20

IRL : CTGAGGGTTCCCCATAAATAAAGACAGGCATAGAAGGTTGTGATCTACTT
IRR : CTGAGGGTTCCCCAGAAACATCATTAATACACCATAATGATGTTTCGATA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CTGAGGGTTCCCCATAAATAAAGACAGGCATAGAAGGTTGTGATCTACTTAGTGTTCCACCAAAAAGTAAGGTCACTCCTCTATGCCTGCTTCACAAGTT
TGCCATAAATTTTTCAGCCAGTCCCTGAACTCCATTCATCAGTACCGTAAAAATGCCCTGCTCGATATGACCGTGGCCCTGACGCGTGGTGCTTCGCTTT
CTCTTACCAGCATCGGCAGATACCTGCCAGGCCCCGCACGTGTTAAGCACAAGATTAAGCGTGTTGACCGGCACCTCAACAGCGACCTGATGTTCAGTGA
TATTCCCTCCGTCTACCGGCAGCTTGTATCCCGACTCACACACAGTCTTTCAGTTTGTGTCATTGCCGTGGACTGGAGTGGTTATCCTTCATCAGAGCTC
AGTGTTTTGCGGGCAAGCTTATTGTGCGATGGCAGAGCTATTCCTCTGATGAGTAAAGTCATTTCCTCCCGCTACCAGAACAACTCTGCCGTGCAAAATG
CCTTTCTCGATCAGATGGCTACTGCCATCGGCAAAGATAAGCAGGTCATTATCGTGACTGATGCAGGCTTTCGCAGCAGCTGGTTTCACCACATCCGTTC
TCTGGGCTGGGATTTTGTCGGACGAGTCAGGGGCAGCCTCTATTTTCAGGTCGTCGGGGATGAAGATTGGCAGATGGCGCGGGATATTGCATCATCAACA
ACGGCGCGCTATCTGGGATTCGGGCGACTGGCACGCAACGCCAGTCGTGACTGTCCGGGACATTTTTACACCGTACATAAGAGGGCGACGGGCAGGAAAA
GCAGCCAGCATTACCCCAGAACAGACAGGATGTACCGTAAAAATGCGCGTGAACCGTGGCTGCTTTTTACCAGCCTGATGGAATATAAGCCACGCGAGAT
TGTTAAAATTTATAGTCGCCGTATGCAGATAGAACAGAACTTCAGGGATGAAAAAAGCGAGCGCTATGGGTTGGGACTGCGGGCAAGTAAAAGCCGGGGG
GAGAAACGAATATCCGTGCTTTGCCTGGTTGCAGTTCTCTACAGCATCATCATATGGCTGACAGGATATTACCTTGAAAGTAAGGGAATAAATCGATGGT
TCCAGGCGAACAGTGAGAAATCACGCAGGGTGCTGTCGTATCTGACATTGAGTGAAAATGTCATCAGGCAGTCGCCGGGGCTCCTGTCGGGGATGAACCC
CGACAGGGTATACGCCGATATGGCGAGGGCCTATCGAAACATCATTATGGTGTATTAATGATGTTTCTGGGGAACCCTCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1176 bp391 aa831258+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPASQVCHKFFSQSLNSIHQYRKNALLDMTVALTRGASLSLTSIGRYLPGPARVKHKIKRVDRHLNSDLMFSDIPSVYRQLVSRLTHSLSVCVIAVDWSG
YPSSELSVLRASLLCDGRAIPLMSKVISSRYQNNSAVQNAFLDQMATAIGKDKQVIIVTDAGFRSSWFHHIRSLGWDFVGRVRGSLYFQVVGDEDWQMAR
DIASSTTARYLGFGRLARNASRDCPGHFYTVHKRATGRKSSQHYPRTDRMYRKNAREPWLLFTSLMEYKPREIVKIYSRRMQIEQNFRDEKSERYGLGLR
ASKSRGEKRISVLCLVAVLYSIIIWLTGYYLESKGINRWFQANSEKSRRVLSYLTLSENVIRQSPGLLSGMNPDRVYADMARAYRNIIMVY

 

Blast result :
Comments
ISCro2 is 70% aa similar to ISSfl1.
3 copies of ISCro2 found in the Citrobacter rodentium genome sequence at coordinates: 762598..763878; 2950713..2951993; 4025050..4026330.
References
1] Nicola Petty (The Wellcome Trust Sanger Institute)(2007) Direct submission.