ISCro2
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Citrobacter rodentium | Citrobacter rodentium |
DNA section
IS Length : 1281 bp
Ends
IR Length : 18/20
IRL : CTGAGGGTTCCCCATAAATAAAGACAGGCATAGAAGGTTGTGATCTACTT
IRR : CTGAGGGTTCCCCAGAAACATCATTAATACACCATAATGATGTTTCGATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CTGAGGGTTCCCCATAAATAAAGACAGGCATAGAAGGTTGTGATCTACTTAGTGTTCCACCAAAAAGTAAGGTCACTCCTCTATGCCTGCTTCACAAGTT
TGCCATAAATTTTTCAGCCAGTCCCTGAACTCCATTCATCAGTACCGTAAAAATGCCCTGCTCGATATGACCGTGGCCCTGACGCGTGGTGCTTCGCTTT
CTCTTACCAGCATCGGCAGATACCTGCCAGGCCCCGCACGTGTTAAGCACAAGATTAAGCGTGTTGACCGGCACCTCAACAGCGACCTGATGTTCAGTGA
TATTCCCTCCGTCTACCGGCAGCTTGTATCCCGACTCACACACAGTCTTTCAGTTTGTGTCATTGCCGTGGACTGGAGTGGTTATCCTTCATCAGAGCTC
AGTGTTTTGCGGGCAAGCTTATTGTGCGATGGCAGAGCTATTCCTCTGATGAGTAAAGTCATTTCCTCCCGCTACCAGAACAACTCTGCCGTGCAAAATG
CCTTTCTCGATCAGATGGCTACTGCCATCGGCAAAGATAAGCAGGTCATTATCGTGACTGATGCAGGCTTTCGCAGCAGCTGGTTTCACCACATCCGTTC
TCTGGGCTGGGATTTTGTCGGACGAGTCAGGGGCAGCCTCTATTTTCAGGTCGTCGGGGATGAAGATTGGCAGATGGCGCGGGATATTGCATCATCAACA
ACGGCGCGCTATCTGGGATTCGGGCGACTGGCACGCAACGCCAGTCGTGACTGTCCGGGACATTTTTACACCGTACATAAGAGGGCGACGGGCAGGAAAA
GCAGCCAGCATTACCCCAGAACAGACAGGATGTACCGTAAAAATGCGCGTGAACCGTGGCTGCTTTTTACCAGCCTGATGGAATATAAGCCACGCGAGAT
TGTTAAAATTTATAGTCGCCGTATGCAGATAGAACAGAACTTCAGGGATGAAAAAAGCGAGCGCTATGGGTTGGGACTGCGGGCAAGTAAAAGCCGGGGG
GAGAAACGAATATCCGTGCTTTGCCTGGTTGCAGTTCTCTACAGCATCATCATATGGCTGACAGGATATTACCTTGAAAGTAAGGGAATAAATCGATGGT
TCCAGGCGAACAGTGAGAAATCACGCAGGGTGCTGTCGTATCTGACATTGAGTGAAAATGTCATCAGGCAGTCGCCGGGGCTCCTGTCGGGGATGAACCC
CGACAGGGTATACGCCGATATGGCGAGGGCCTATCGAAACATCATTATGGTGTATTAATGATGTTTCTGGGGAACCCTCAG
TGCCATAAATTTTTCAGCCAGTCCCTGAACTCCATTCATCAGTACCGTAAAAATGCCCTGCTCGATATGACCGTGGCCCTGACGCGTGGTGCTTCGCTTT
CTCTTACCAGCATCGGCAGATACCTGCCAGGCCCCGCACGTGTTAAGCACAAGATTAAGCGTGTTGACCGGCACCTCAACAGCGACCTGATGTTCAGTGA
TATTCCCTCCGTCTACCGGCAGCTTGTATCCCGACTCACACACAGTCTTTCAGTTTGTGTCATTGCCGTGGACTGGAGTGGTTATCCTTCATCAGAGCTC
AGTGTTTTGCGGGCAAGCTTATTGTGCGATGGCAGAGCTATTCCTCTGATGAGTAAAGTCATTTCCTCCCGCTACCAGAACAACTCTGCCGTGCAAAATG
CCTTTCTCGATCAGATGGCTACTGCCATCGGCAAAGATAAGCAGGTCATTATCGTGACTGATGCAGGCTTTCGCAGCAGCTGGTTTCACCACATCCGTTC
TCTGGGCTGGGATTTTGTCGGACGAGTCAGGGGCAGCCTCTATTTTCAGGTCGTCGGGGATGAAGATTGGCAGATGGCGCGGGATATTGCATCATCAACA
ACGGCGCGCTATCTGGGATTCGGGCGACTGGCACGCAACGCCAGTCGTGACTGTCCGGGACATTTTTACACCGTACATAAGAGGGCGACGGGCAGGAAAA
GCAGCCAGCATTACCCCAGAACAGACAGGATGTACCGTAAAAATGCGCGTGAACCGTGGCTGCTTTTTACCAGCCTGATGGAATATAAGCCACGCGAGAT
TGTTAAAATTTATAGTCGCCGTATGCAGATAGAACAGAACTTCAGGGATGAAAAAAGCGAGCGCTATGGGTTGGGACTGCGGGCAAGTAAAAGCCGGGGG
GAGAAACGAATATCCGTGCTTTGCCTGGTTGCAGTTCTCTACAGCATCATCATATGGCTGACAGGATATTACCTTGAAAGTAAGGGAATAAATCGATGGT
TCCAGGCGAACAGTGAGAAATCACGCAGGGTGCTGTCGTATCTGACATTGAGTGAAAATGTCATCAGGCAGTCGCCGGGGCTCCTGTCGGGGATGAACCC
CGACAGGGTATACGCCGATATGGCGAGGGCCTATCGAAACATCATTATGGTGTATTAATGATGTTTCTGGGGAACCCTCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1176 bp | 391 aa | 83 | 1258 | + | No |
Chemistry : DDE
ORF sequence :
MPASQVCHKFFSQSLNSIHQYRKNALLDMTVALTRGASLSLTSIGRYLPGPARVKHKIKRVDRHLNSDLMFSDIPSVYRQLVSRLTHSLSVCVIAVDWSG
YPSSELSVLRASLLCDGRAIPLMSKVISSRYQNNSAVQNAFLDQMATAIGKDKQVIIVTDAGFRSSWFHHIRSLGWDFVGRVRGSLYFQVVGDEDWQMAR
DIASSTTARYLGFGRLARNASRDCPGHFYTVHKRATGRKSSQHYPRTDRMYRKNAREPWLLFTSLMEYKPREIVKIYSRRMQIEQNFRDEKSERYGLGLR
ASKSRGEKRISVLCLVAVLYSIIIWLTGYYLESKGINRWFQANSEKSRRVLSYLTLSENVIRQSPGLLSGMNPDRVYADMARAYRNIIMVY
YPSSELSVLRASLLCDGRAIPLMSKVISSRYQNNSAVQNAFLDQMATAIGKDKQVIIVTDAGFRSSWFHHIRSLGWDFVGRVRGSLYFQVVGDEDWQMAR
DIASSTTARYLGFGRLARNASRDCPGHFYTVHKRATGRKSSQHYPRTDRMYRKNAREPWLLFTSLMEYKPREIVKIYSRRMQIEQNFRDEKSERYGLGLR
ASKSRGEKRISVLCLVAVLYSIIIWLTGYYLESKGINRWFQANSEKSRRVLSYLTLSENVIRQSPGLLSGMNPDRVYADMARAYRNIIMVY
Blast result :
Comments
ISCro2 is 70% aa similar to ISSfl1.
3 copies of ISCro2 found in the Citrobacter rodentium genome sequence at coordinates: 762598..763878; 2950713..2951993; 4025050..4026330.
3 copies of ISCro2 found in the Citrobacter rodentium genome sequence at coordinates: 762598..763878; 2950713..2951993; 4025050..4026330.
References
1] Nicola Petty (The Wellcome Trust Sanger Institute)(2007) Direct submission.