ISRle6
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008382 | ND | Rhizobium leguminosarum | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL7 |
DNA section
IS Length : 891 bp
Ends
IR Length : 15/17
IRL : GGGCCTGTCGCAAATTTTTGCGCTTAACGGTATGTTGACCGTCGGAGGAG
IRR : GGGCTTGTCGCAAACTTCCACAGAGGCCTCGGCTATCCCCTGAAGGATGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACATCGAATGGCCTGGACACCCTTCAC | GGTAAAAGCCTCCCCGCTAAAAGCAGCCTCG | 0 |
DNA sequence
GGGCCTGTCGCAAATTTTTGCGCTTAACGGTATGTTGACCGTCGGAGGAGAAATTTCCGCTCCAAATGTTGTGGAGCGTACGGATGATTCTGAATGCTAT
TGCCGAAAAGCTGAAGCGGCAGTCGAAGGATGATTTCAAAGGCAGGCATTTCGAGGCATGGCTGATCGTACAGGCGGTCACCTGGTATTTGAGATATCCC
CTGAGCTATCGAGATCTGGAAGAAATGTTCGAGGAGCGCGGCTTCGAAGTCGATCATAGCACGATCAACCGCTGGGTATTGAGCTATGCGCCGATGATCG
AGAAGCGTCTTCGCCAGTTTCGCCGGCCGCATTGTGGATCGGTTCGGATTGACGAGACCTACGTTAAGATCCGCGGCAAATGGCGCTATCTGTACCGAGC
CATCGATAAGCATGGCAACCCGGTGGATTTCCTGCTTTCCGCAAAGCGAGATCTCGAAGCCGCCAAGCGGTTCCTTCGCAAGACGCTGAAAGATCAGCCC
TTACTGTCGCCGAACAAGATCTGCACAGATGGTGCCAATACCTTCCCGTCGGCGATCAAAGCTTCGGTTGAAGACGGGCTTCTACAGCCCGACCCCGTGC
ACTATGTGACCAAGCACCTGCAACAAGGCATTGAGAGCGATCATTTCCGTGTGAAAAAGAACATGCCGAAGATCGGCGGCTTCCAATCCTTCAACACGGC
GCGGCGAACGATTGCCGGTTTCGAGGCGATGCTGTGGTTGAGAAAAGGCTTCGGCTTTTCCGGCGGCTGGACGATCAACGATCAAAACGATTTGGTTGCG
CGCCTCTTCGGACTTACAAAGGTTAACAAAACATGAAAATAGCATCCTTCAGGGGATAGCCGAGGCCTCTGTGGAAGTTTGCGACAAGCCC
TGCCGAAAAGCTGAAGCGGCAGTCGAAGGATGATTTCAAAGGCAGGCATTTCGAGGCATGGCTGATCGTACAGGCGGTCACCTGGTATTTGAGATATCCC
CTGAGCTATCGAGATCTGGAAGAAATGTTCGAGGAGCGCGGCTTCGAAGTCGATCATAGCACGATCAACCGCTGGGTATTGAGCTATGCGCCGATGATCG
AGAAGCGTCTTCGCCAGTTTCGCCGGCCGCATTGTGGATCGGTTCGGATTGACGAGACCTACGTTAAGATCCGCGGCAAATGGCGCTATCTGTACCGAGC
CATCGATAAGCATGGCAACCCGGTGGATTTCCTGCTTTCCGCAAAGCGAGATCTCGAAGCCGCCAAGCGGTTCCTTCGCAAGACGCTGAAAGATCAGCCC
TTACTGTCGCCGAACAAGATCTGCACAGATGGTGCCAATACCTTCCCGTCGGCGATCAAAGCTTCGGTTGAAGACGGGCTTCTACAGCCCGACCCCGTGC
ACTATGTGACCAAGCACCTGCAACAAGGCATTGAGAGCGATCATTTCCGTGTGAAAAAGAACATGCCGAAGATCGGCGGCTTCCAATCCTTCAACACGGC
GCGGCGAACGATTGCCGGTTTCGAGGCGATGCTGTGGTTGAGAAAAGGCTTCGGCTTTTCCGGCGGCTGGACGATCAACGATCAAAACGATTTGGTTGCG
CGCCTCTTCGGACTTACAAAGGTTAACAAAACATGAAAATAGCATCCTTCAGGGGATAGCCGAGGCCTCTGTGGAAGTTTGCGACAAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
771 bp | 256 aa | 66 | 836 | + | No |
Chemistry : DDE
ORF sequence :
MLWSVRMILNAIAEKLKRQSKDDFKGRHFEAWLIVQAVTWYLRYPLSYRDLEEMFEERGFEVDHSTINRWVLSYAPMIEKRLRQFRRPHCGSVRIDETYV
KIRGKWRYLYRAIDKHGNPVDFLLSAKRDLEAAKRFLRKTLKDQPLLSPNKICTDGANTFPSAIKASVEDGLLQPDPVHYVTKHLQQGIESDHFRVKKNM
PKIGGFQSFNTARRTIAGFEAMLWLRKGFGFSGGWTINDQNDLVARLFGLTKVNKT
KIRGKWRYLYRAIDKHGNPVDFLLSAKRDLEAAKRFLRKTLKDQPLLSPNKICTDGANTFPSAIKASVEDGLLQPDPVHYVTKHLQQGIESDHFRVKKNM
PKIGGFQSFNTARRTIAGFEAMLWLRKGFGFSGGWTINDQNDLVARLFGLTKVNKT
Blast result :
Comments
ISRle6 is 95% aa similar to ISRle39A.
References
1] Young,J.P., Crossman,L.C., Johnston,A.W., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,I., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J. (2006) Genome Biol. 7 (4), R34