ISMpo1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010727 ND Methylobacterium populi
Methylobacterium populi BJ001 plasmid pMPOP01
DNA section
IS Length : 888 bp

Ends


IR Length : 15/16

IRL : GGGCCTGTCGCAAACCCGCAGCGTTTACCCCGCGTTGACCATGCAGCCCG
IRR : GGGCCTGTCGCAAGCCGTGCCGTAGGCCGCAGCAGAGGCTAGATCTGTCT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCGCCCTCGCAGTGGGCATATCGTCGGCGACGAGCCCCA0
CCGACGCCTACAAGGAATACCGCCCGGCTCGCAGCCGAGC0

DNA sequence

GGGCCTGTCGCAAACCCGCAGCGTTTACCCCGCGTTGACCATGCAGCCCGCATGGTGCCTCCAGTCCCGGAGGCCACCCCATGATCCTGTCCGCCATCGC
CGCGAAGCTGAAGCAGCGTGCCAAGGCTGACTTCAAGGGCCGGCACTATGAGGCTGCCCTGATCGTCCAGGCCGTCTCCTGGTACCTGCGCTACCCGCTG
AGCTACCGCGACATCGAGGAGCTGTTCCTGGAACGCGGCATGGATGTGGACCACTCCACCCTGAACCGCTGGGTCTTGGCCTACGCGCCGCTGATCGAAA
AGCGGTTGCGGCAGTTCCGCAAACCGCACTGCGGCTCGGTACGCATCGACGAAACGTACATCAAGGTGCGGGGGGAGTGGCGCTATCTCTACCGGGCCGT
CGACAAGCACGGCAATCCAGTCGATTTCCTGCTCACCGCCAATCGGGATCTCGATGCCGCCAAGCGCTTCTTCCGCAAGATGCTGCAGGATCAGCCGTTG
CTCGCCCCGGATCGCATCGGCACGGATGGCGCCGGCACCTATCCACCCGCCATCTTGGCTGCGAGGAACGACGGCCTTCTACCCCGCGCGCCGCTCCACT
ATGTGACCAAGCACCTGCAGCAGGGCATTGAGAGCGACCACTTTCGGGTCAAGAAGAACATGCCCCGGATCGGCGGCTTCCAGTCCTTCCGCACTGCCCG
GCGCACGATCCAGGGGTTCGAGGCCATGCTGTGGCTGCGCAAGGGCTTCGGCTTTGCCGGCGCATGGACCATCCGCGAGCAGAACCGACTGCTCGGGGTC
TGCTTCGGCCTTCAGGCGGTTAACAGAGCCTAAAAACGAGACAGATCTAGCCTCTGCTGCGGCCTACGGCACGGCTTGCGACAGGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
753 bp250 aa81833+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MILSAIAAKLKQRAKADFKGRHYEAALIVQAVSWYLRYPLSYRDIEELFLERGMDVDHSTLNRWVLAYAPLIEKRLRQFRKPHCGSVRIDETYIKVRGEW
RYLYRAVDKHGNPVDFLLTANRDLDAAKRFFRKMLQDQPLLAPDRIGTDGAGTYPPAILAARNDGLLPRAPLHYVTKHLQQGIESDHFRVKKNMPRIGGF
QSFRTARRTIQGFEAMLWLRKGFGFAGAWTIREQNRLLGVCFGLQAVNRA

 

Blast result :
Comments
ISMpo1 is 89% similar to ISRle39B.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank