ISPpr9
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005871 | ND | Photobacterium profundum | Photobacterium profundum SS9 plasmid pPBPR1 |
DNA section
IS Length : 858 bp
Ends
IR Length : 18/22
IRL : GGCTCTGTTGCAAAAAATTCAGCCAAGGCTCAGAATTCCGTCTTTCCCAT
IRR : GGCTTGTTGCAACTAATCAGATAGTGCAGATCTACCCAGCGATAGACTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGGGCAAATTGCCATAACGCCTGCAATAA | CAAACAAAGAACATATAATTCCCAAGTG | 0 |
DNA sequence
GGCTCTGTTGCAAAAAATTCAGCCAAGGCTCAGAATTCCGTCTTTCCCATCTAATCTAGCGACTCAATGACCAACCCCGAATTCAAATGGAAACACTTTG
CTCCTGAAATCATTCTTTGGTGCCTTCGTTGGTATGGTTCGACCCCAATGAGCTACGCGAACCTCAGTGACATGCTGGCAGAGCGAGGGATTTCGGTTAA
TCGTTCGACCATTTATCGTTGGTACATTGAATATGCCCCGACATTACGTAAGAAGTTACGTCGCCATCAATTCATCCGGACAGACTCTTCGTGGCAGCTC
GATGAAACCTACGTCAAAGTGAAGGGGAAATGGCACTACCTTTACCGTGCCATCAATAAGCAAGGCGAGACGCTGGATTTCTATTTCTCTCACAAACGTA
ATAAAGAAGCTGCATATCAGTTTCTTAGGCGCTGCCTGAGATATTACGACTTAGACAATCAGCCTAAAACGTTAAATACCGACAAGCATTCCTCATACGC
CAATGCGATAGCCCGCTTGAAGAAGGAGGGACGACTGCGAGCGGATGTCGAGCAGCGGCAAGTGAAGTATCTCAATAATGGTATCGAGTCCGATCACGCC
CCCATCAAGAAGCTTGTTGTAGCCACCGGCGGTTTCAAAATACGAAAGCGAGCCTGGTCAACCATCCAGGGATTCGAATCATTTCGGATGTTGAACAAGG
GCCAGTTTGATTTTTGGTTACGTCATGATGAACGTGAAACCCTTGTGCGGGAGAGATCCGCCTTCATGAATCGTCTCTTCAATGTTGAGGTTGTTTACCA
GTAATCATTAAGTCTATCGCTGGGTAGATCTGCACTATCTGATTAGTTGCAACAAGCC
CTCCTGAAATCATTCTTTGGTGCCTTCGTTGGTATGGTTCGACCCCAATGAGCTACGCGAACCTCAGTGACATGCTGGCAGAGCGAGGGATTTCGGTTAA
TCGTTCGACCATTTATCGTTGGTACATTGAATATGCCCCGACATTACGTAAGAAGTTACGTCGCCATCAATTCATCCGGACAGACTCTTCGTGGCAGCTC
GATGAAACCTACGTCAAAGTGAAGGGGAAATGGCACTACCTTTACCGTGCCATCAATAAGCAAGGCGAGACGCTGGATTTCTATTTCTCTCACAAACGTA
ATAAAGAAGCTGCATATCAGTTTCTTAGGCGCTGCCTGAGATATTACGACTTAGACAATCAGCCTAAAACGTTAAATACCGACAAGCATTCCTCATACGC
CAATGCGATAGCCCGCTTGAAGAAGGAGGGACGACTGCGAGCGGATGTCGAGCAGCGGCAAGTGAAGTATCTCAATAATGGTATCGAGTCCGATCACGCC
CCCATCAAGAAGCTTGTTGTAGCCACCGGCGGTTTCAAAATACGAAAGCGAGCCTGGTCAACCATCCAGGGATTCGAATCATTTCGGATGTTGAACAAGG
GCCAGTTTGATTTTTGGTTACGTCATGATGAACGTGAAACCCTTGTGCGGGAGAGATCCGCCTTCATGAATCGTCTCTTCAATGTTGAGGTTGTTTACCA
GTAATCATTAAGTCTATCGCTGGGTAGATCTGCACTATCTGATTAGTTGCAACAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
738 bp | 245 aa | 67 | 804 | + | No |
Chemistry : DDE
ORF sequence :
MTNPEFKWKHFAPEIILWCLRWYGSTPMSYANLSDMLAERGISVNRSTIYRWYIEYAPTLRKKLRRHQFIRTDSSWQLDETYVKVKGKWHYLYRAINKQG
ETLDFYFSHKRNKEAAYQFLRRCLRYYDLDNQPKTLNTDKHSSYANAIARLKKEGRLRADVEQRQVKYLNNGIESDHAPIKKLVVATGGFKIRKRAWSTI
QGFESFRMLNKGQFDFWLRHDERETLVRERSAFMNRLFNVEVVYQ
ETLDFYFSHKRNKEAAYQFLRRCLRYYDLDNQPKTLNTDKHSSYANAIARLKKEGRLRADVEQRQVKYLNNGIESDHAPIKKLVVATGGFKIRKRAWSTI
QGFESFRMLNKGQFDFWLRHDERETLVRERSAFMNRLFNVEVVYQ
Blast result :
Comments
ISPpr9 is 83% aa similar to IS1635.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F.M., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Romualdi,C., Bartlett,D.H. and Valle,G. (2005) Science 307 (5714), 1459-1461