ISPpr9

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005871 ND Photobacterium profundum
Photobacterium profundum SS9 plasmid pPBPR1
DNA section
IS Length : 858 bp

Ends


IR Length : 18/22

IRL : GGCTCTGTTGCAAAAAATTCAGCCAAGGCTCAGAATTCCGTCTTTCCCAT
IRR : GGCTTGTTGCAACTAATCAGATAGTGCAGATCTACCCAGCGATAGACTTA

Insertion site


Left flankDirect repeatRight flankDR Length
TAGGGCAAATTGCCATAACGCCTGCAATAACAAACAAAGAACATATAATTCCCAAGTG0

DNA sequence

GGCTCTGTTGCAAAAAATTCAGCCAAGGCTCAGAATTCCGTCTTTCCCATCTAATCTAGCGACTCAATGACCAACCCCGAATTCAAATGGAAACACTTTG
CTCCTGAAATCATTCTTTGGTGCCTTCGTTGGTATGGTTCGACCCCAATGAGCTACGCGAACCTCAGTGACATGCTGGCAGAGCGAGGGATTTCGGTTAA
TCGTTCGACCATTTATCGTTGGTACATTGAATATGCCCCGACATTACGTAAGAAGTTACGTCGCCATCAATTCATCCGGACAGACTCTTCGTGGCAGCTC
GATGAAACCTACGTCAAAGTGAAGGGGAAATGGCACTACCTTTACCGTGCCATCAATAAGCAAGGCGAGACGCTGGATTTCTATTTCTCTCACAAACGTA
ATAAAGAAGCTGCATATCAGTTTCTTAGGCGCTGCCTGAGATATTACGACTTAGACAATCAGCCTAAAACGTTAAATACCGACAAGCATTCCTCATACGC
CAATGCGATAGCCCGCTTGAAGAAGGAGGGACGACTGCGAGCGGATGTCGAGCAGCGGCAAGTGAAGTATCTCAATAATGGTATCGAGTCCGATCACGCC
CCCATCAAGAAGCTTGTTGTAGCCACCGGCGGTTTCAAAATACGAAAGCGAGCCTGGTCAACCATCCAGGGATTCGAATCATTTCGGATGTTGAACAAGG
GCCAGTTTGATTTTTGGTTACGTCATGATGAACGTGAAACCCTTGTGCGGGAGAGATCCGCCTTCATGAATCGTCTCTTCAATGTTGAGGTTGTTTACCA
GTAATCATTAAGTCTATCGCTGGGTAGATCTGCACTATCTGATTAGTTGCAACAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
738 bp245 aa67804+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTNPEFKWKHFAPEIILWCLRWYGSTPMSYANLSDMLAERGISVNRSTIYRWYIEYAPTLRKKLRRHQFIRTDSSWQLDETYVKVKGKWHYLYRAINKQG
ETLDFYFSHKRNKEAAYQFLRRCLRYYDLDNQPKTLNTDKHSSYANAIARLKKEGRLRADVEQRQVKYLNNGIESDHAPIKKLVVATGGFKIRKRAWSTI
QGFESFRMLNKGQFDFWLRHDERETLVRERSAFMNRLFNVEVVYQ

 

Blast result :
Comments
ISPpr9 is 83% aa similar to IS1635.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F.M., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Romualdi,C., Bartlett,D.H. and Valle,G. (2005) Science 307 (5714), 1459-1461