ISCef5

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004320 ND Corynebacterium efficiens
Corynebacterium efficiens plasmid pCE3
DNA section
IS Length : 845 bp

Ends


IR Length : 22/24

IRL : GGGTGCTGTTGCAAAGTTCGGGCGACAGGAAGACCTGCGTGAAATAATCA
IRR : GGGTGCTGTTGCAAACTTCAGGCGGAGAGCCGTGACGACCCAGTCTTCAT

Insertion site


Left flankDirect repeatRight flankDR Length
ACGCACTGACGCTTCCCCCTGCCATCAGACTCGAAGTAATGGGTG0

DNA sequence

GGGTGCTGTTGCAAAGTTCGGGCGACAGGAAGACCTGCGTGAAATAATCACAGCCATGGGCATCTTCTCCGGTCGTCATTTCCCCCGTGAAATCATCCTG
TGGGCGGTCCGGTGGTACTGCCGCTACGGGCTCAGCTACCGCGATCTGGAAGAAATGATGACCGAACGCGGCGTACCGGTCGATCACAGCACCATCTACC
GCTGGGTCCAGAAATATGCTCCTGAGCTGGACAAGCAGACCCGGTGGTACCGACAAGTCCCGGATTGGCAGGCCCGGTCCTGGCGGGTGGACGAGACCTA
TATCCGGGTCGGGGGAAAGTGGTGCTACCTCTATCGGGCCATCACCGCGGGCGGGCATACCCTGGATTTTTACCTGTCCCCAAAGCGTAACGTCGCCGCA
GCGAAGCGTTTCCTGGCCAAGACCCTGAGGTCGAACACGATAACCGGGTCCCCGCGGGTGATCAACACCGATAAAGCACCCTCCCTGGCCAGGGCAATCG
CCGAGTTGAAGTCAGAGGGAATCTACCCGCAGACCGTGGAACACCGGCAGGTGAAATACCTCAATAACGTCATTGAAGGAGATCATGGGCGGCTGAAACG
GATCCTCGGACCGAAGGGGGCGTTCAAAAACCGGACCTCGGCGTACCGGACGTTGAAAGGGATGGAAGCGATGCACTCATTACGGAAAGGGCAGGGCGCG
ATGTTTGCCTACGGGCAACCGAACCCGGATGCGGTGATCGTCAGCCGGGTGTTCGAGGCTGCCTGAGAACGCCGACCCGCAGCGAGCATCAGAGGATGAA
GACTGGGTCGTCACGGCTCTCCGCCTGAAGTTTGCAACAGCACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
721 bp236 aa56776+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGIFSGRHFPREIILWAVRWYCRYGLSYRDLEEMMTERGVPVDHSTIYRWVQKYAPELDKQTRWYRQVPDWQARSWRVDETYIRVGGKWCYLYRAITAGG
HTLDFYLSPKRNVAAAKRFLAKTLRSNTITGSPRVINTDKAPSLARAIAELKSEGIYPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRTSAYRTL
KGMEAMHSLRKGQGAMFAYGQPNPDAVIVSRVFEAA

 

Blast result :
Comments
ISCef5 is 95% aa simlar to IS1628
References
1] Kawarabayasi,Y., Yamazaki,J., Hino,Y. and Kikuchi,H. (2002) Direct submission GenBank.