ISCef5
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004320 | ND | Corynebacterium efficiens | Corynebacterium efficiens plasmid pCE3 |
DNA section
IS Length : 845 bp
Ends
IR Length : 22/24
IRL : GGGTGCTGTTGCAAAGTTCGGGCGACAGGAAGACCTGCGTGAAATAATCA
IRR : GGGTGCTGTTGCAAACTTCAGGCGGAGAGCCGTGACGACCCAGTCTTCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGCACTGACGCTTCCCCCTGCCA | TCAGACTCGAAGTAATGGGTG | 0 |
DNA sequence
GGGTGCTGTTGCAAAGTTCGGGCGACAGGAAGACCTGCGTGAAATAATCACAGCCATGGGCATCTTCTCCGGTCGTCATTTCCCCCGTGAAATCATCCTG
TGGGCGGTCCGGTGGTACTGCCGCTACGGGCTCAGCTACCGCGATCTGGAAGAAATGATGACCGAACGCGGCGTACCGGTCGATCACAGCACCATCTACC
GCTGGGTCCAGAAATATGCTCCTGAGCTGGACAAGCAGACCCGGTGGTACCGACAAGTCCCGGATTGGCAGGCCCGGTCCTGGCGGGTGGACGAGACCTA
TATCCGGGTCGGGGGAAAGTGGTGCTACCTCTATCGGGCCATCACCGCGGGCGGGCATACCCTGGATTTTTACCTGTCCCCAAAGCGTAACGTCGCCGCA
GCGAAGCGTTTCCTGGCCAAGACCCTGAGGTCGAACACGATAACCGGGTCCCCGCGGGTGATCAACACCGATAAAGCACCCTCCCTGGCCAGGGCAATCG
CCGAGTTGAAGTCAGAGGGAATCTACCCGCAGACCGTGGAACACCGGCAGGTGAAATACCTCAATAACGTCATTGAAGGAGATCATGGGCGGCTGAAACG
GATCCTCGGACCGAAGGGGGCGTTCAAAAACCGGACCTCGGCGTACCGGACGTTGAAAGGGATGGAAGCGATGCACTCATTACGGAAAGGGCAGGGCGCG
ATGTTTGCCTACGGGCAACCGAACCCGGATGCGGTGATCGTCAGCCGGGTGTTCGAGGCTGCCTGAGAACGCCGACCCGCAGCGAGCATCAGAGGATGAA
GACTGGGTCGTCACGGCTCTCCGCCTGAAGTTTGCAACAGCACCC
TGGGCGGTCCGGTGGTACTGCCGCTACGGGCTCAGCTACCGCGATCTGGAAGAAATGATGACCGAACGCGGCGTACCGGTCGATCACAGCACCATCTACC
GCTGGGTCCAGAAATATGCTCCTGAGCTGGACAAGCAGACCCGGTGGTACCGACAAGTCCCGGATTGGCAGGCCCGGTCCTGGCGGGTGGACGAGACCTA
TATCCGGGTCGGGGGAAAGTGGTGCTACCTCTATCGGGCCATCACCGCGGGCGGGCATACCCTGGATTTTTACCTGTCCCCAAAGCGTAACGTCGCCGCA
GCGAAGCGTTTCCTGGCCAAGACCCTGAGGTCGAACACGATAACCGGGTCCCCGCGGGTGATCAACACCGATAAAGCACCCTCCCTGGCCAGGGCAATCG
CCGAGTTGAAGTCAGAGGGAATCTACCCGCAGACCGTGGAACACCGGCAGGTGAAATACCTCAATAACGTCATTGAAGGAGATCATGGGCGGCTGAAACG
GATCCTCGGACCGAAGGGGGCGTTCAAAAACCGGACCTCGGCGTACCGGACGTTGAAAGGGATGGAAGCGATGCACTCATTACGGAAAGGGCAGGGCGCG
ATGTTTGCCTACGGGCAACCGAACCCGGATGCGGTGATCGTCAGCCGGGTGTTCGAGGCTGCCTGAGAACGCCGACCCGCAGCGAGCATCAGAGGATGAA
GACTGGGTCGTCACGGCTCTCCGCCTGAAGTTTGCAACAGCACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
721 bp | 236 aa | 56 | 776 | + | No |
Chemistry : DDE
ORF sequence :
MGIFSGRHFPREIILWAVRWYCRYGLSYRDLEEMMTERGVPVDHSTIYRWVQKYAPELDKQTRWYRQVPDWQARSWRVDETYIRVGGKWCYLYRAITAGG
HTLDFYLSPKRNVAAAKRFLAKTLRSNTITGSPRVINTDKAPSLARAIAELKSEGIYPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRTSAYRTL
KGMEAMHSLRKGQGAMFAYGQPNPDAVIVSRVFEAA
HTLDFYLSPKRNVAAAKRFLAKTLRSNTITGSPRVINTDKAPSLARAIAELKSEGIYPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRTSAYRTL
KGMEAMHSLRKGQGAMFAYGQPNPDAVIVSRVFEAA
Blast result :
Comments
ISCef5 is 95% aa simlar to IS1628
References
1] Kawarabayasi,Y., Yamazaki,J., Hino,Y. and Kikuchi,H. (2002) Direct submission GenBank.