ISBwe3
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010180 | ND | Bacillus weihenstephanensis | Bacillus weihenstephanensis KBAB4 plasmid pBWB401 |
DNA section
IS Length : 843 bp
Ends
IR Length : 15/16
IRL : GGTTCTGGTGCAAAAAATCTCTTAAACTTGGACATACTGATATTACTACT
IRR : GGTTCTGGTGCAAAGATAAAATAAAAGAGAATATAGCGCGTATATTTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGAAGGATATTGAGAACTTATGATTTA | AAAAATAAAACTGACTCTAGTTAGCCAG | 0 |
DNA sequence
GGTTCTGGTGCAAAAAATCTCTTAAACTTGGACATACTGATATTACTACTCTACAAAAGGTGTGTGATCAGTATGGAAAAGGAGAATTTGTTCAAATGGA
AGCATTATCAGCCTGAACTAATCTTATTAACAGTAAGATGGTACCTACGGTACAATTTGAGCTTTCGTAACCTGGTGGAAATGATGGAGGAAAGAGGATT
ATCAATTGCTCACACAACGATTATGCGCTGGGTTCATCAATATGGACCTCAATTAGAAGAGAAAGTACGACATCATCTAAAATCAACCAATGATTCATGG
AGAGTCGATGAAACCTATATTAAAGTAAAAGGGCAATGGATGTATTTATATCGTGCCGTTGATTCAAAAGGGAATACCATTGATTTTCATCTAAGTAAAT
CAAGAGATAAACAAGCCGCCAAGTGCTTTTTCAAGAAAGCCCTGGCTTTTTCGTACGTTTCTAAACCTCGCGTGATAACAGTAGATAAGAACCCTGCCTA
TCCTGTAGCAATTCAAGCGTTGAAAGAAGAAAAACATATGCCTGAAGGCATCAAGCTAAGACAAGTTAGATATCTCAATAATATAGTGGAACAAGATCAT
CGTTTTATTAAGAAACGTGTGCGTTCTATGTTAGGGTTCAAGTCTTTTGGCACAGCTACATCCATTCTTGCAGGAGTAGAAGCTATGCATATGATTAAAA
AAGAACAGATTGATTTACGGGATCAGTCTGTTCAAAATCAGAAAGAATTCATCCATCAATTGTTTGGGCTAACAGCATAAAATACAATTCTGCTCGAAAT
ATACGCGCTATATTCTCTTTTATTTTATCTTTGCACCAGAACC
AGCATTATCAGCCTGAACTAATCTTATTAACAGTAAGATGGTACCTACGGTACAATTTGAGCTTTCGTAACCTGGTGGAAATGATGGAGGAAAGAGGATT
ATCAATTGCTCACACAACGATTATGCGCTGGGTTCATCAATATGGACCTCAATTAGAAGAGAAAGTACGACATCATCTAAAATCAACCAATGATTCATGG
AGAGTCGATGAAACCTATATTAAAGTAAAAGGGCAATGGATGTATTTATATCGTGCCGTTGATTCAAAAGGGAATACCATTGATTTTCATCTAAGTAAAT
CAAGAGATAAACAAGCCGCCAAGTGCTTTTTCAAGAAAGCCCTGGCTTTTTCGTACGTTTCTAAACCTCGCGTGATAACAGTAGATAAGAACCCTGCCTA
TCCTGTAGCAATTCAAGCGTTGAAAGAAGAAAAACATATGCCTGAAGGCATCAAGCTAAGACAAGTTAGATATCTCAATAATATAGTGGAACAAGATCAT
CGTTTTATTAAGAAACGTGTGCGTTCTATGTTAGGGTTCAAGTCTTTTGGCACAGCTACATCCATTCTTGCAGGAGTAGAAGCTATGCATATGATTAAAA
AAGAACAGATTGATTTACGGGATCAGTCTGTTCAAAATCAGAAAGAATTCATCCATCAATTGTTTGGGCTAACAGCATAAAATACAATTCTGCTCGAAAT
ATACGCGCTATATTCTCTTTTATTTTATCTTTGCACCAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
708 bp | 235 aa | 73 | 780 | + | No |
Chemistry : DDE
ORF sequence :
MEKENLFKWKHYQPELILLTVRWYLRYNLSFRNLVEMMEERGLSIAHTTIMRWVHQYGPQLEEKVRHHLKSTNDSWRVDETYIKVKGQWMYLYRAVDSKG
NTIDFHLSKSRDKQAAKCFFKKALAFSYVSKPRVITVDKNPAYPVAIQALKEEKHMPEGIKLRQVRYLNNIVEQDHRFIKKRVRSMLGFKSFGTATSILA
GVEAMHMIKKEQIDLRDQSVQNQKEFIHQLFGLTA
NTIDFHLSKSRDKQAAKCFFKKALAFSYVSKPRVITVDKNPAYPVAIQALKEEKHMPEGIKLRQVRYLNNIVEQDHRFIKKRVRSMLGFKSFGTATSILA
GVEAMHMIKKEQIDLRDQSVQNQKEFIHQLFGLTA
Blast result :
Comments
ISBwe3 is 92% aa similar to IS240C.
References
1] Lapidus,A., Goltsman,E., Copeland,A., Lucas,S., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M., Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D., Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A. (2007) Direct Submission GenBank.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).