ISBwe3

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010180 ND Bacillus weihenstephanensis
Bacillus weihenstephanensis KBAB4 plasmid pBWB401
DNA section
IS Length : 843 bp

Ends


IR Length : 15/16

IRL : GGTTCTGGTGCAAAAAATCTCTTAAACTTGGACATACTGATATTACTACT
IRR : GGTTCTGGTGCAAAGATAAAATAAAAGAGAATATAGCGCGTATATTTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
TAGAAGGATATTGAGAACTTATGATTTAAAAAATAAAACTGACTCTAGTTAGCCAG0

DNA sequence

GGTTCTGGTGCAAAAAATCTCTTAAACTTGGACATACTGATATTACTACTCTACAAAAGGTGTGTGATCAGTATGGAAAAGGAGAATTTGTTCAAATGGA
AGCATTATCAGCCTGAACTAATCTTATTAACAGTAAGATGGTACCTACGGTACAATTTGAGCTTTCGTAACCTGGTGGAAATGATGGAGGAAAGAGGATT
ATCAATTGCTCACACAACGATTATGCGCTGGGTTCATCAATATGGACCTCAATTAGAAGAGAAAGTACGACATCATCTAAAATCAACCAATGATTCATGG
AGAGTCGATGAAACCTATATTAAAGTAAAAGGGCAATGGATGTATTTATATCGTGCCGTTGATTCAAAAGGGAATACCATTGATTTTCATCTAAGTAAAT
CAAGAGATAAACAAGCCGCCAAGTGCTTTTTCAAGAAAGCCCTGGCTTTTTCGTACGTTTCTAAACCTCGCGTGATAACAGTAGATAAGAACCCTGCCTA
TCCTGTAGCAATTCAAGCGTTGAAAGAAGAAAAACATATGCCTGAAGGCATCAAGCTAAGACAAGTTAGATATCTCAATAATATAGTGGAACAAGATCAT
CGTTTTATTAAGAAACGTGTGCGTTCTATGTTAGGGTTCAAGTCTTTTGGCACAGCTACATCCATTCTTGCAGGAGTAGAAGCTATGCATATGATTAAAA
AAGAACAGATTGATTTACGGGATCAGTCTGTTCAAAATCAGAAAGAATTCATCCATCAATTGTTTGGGCTAACAGCATAAAATACAATTCTGCTCGAAAT
ATACGCGCTATATTCTCTTTTATTTTATCTTTGCACCAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
708 bp235 aa73780+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEKENLFKWKHYQPELILLTVRWYLRYNLSFRNLVEMMEERGLSIAHTTIMRWVHQYGPQLEEKVRHHLKSTNDSWRVDETYIKVKGQWMYLYRAVDSKG
NTIDFHLSKSRDKQAAKCFFKKALAFSYVSKPRVITVDKNPAYPVAIQALKEEKHMPEGIKLRQVRYLNNIVEQDHRFIKKRVRSMLGFKSFGTATSILA
GVEAMHMIKKEQIDLRDQSVQNQKEFIHQLFGLTA

 

Blast result :
Comments
ISBwe3 is 92% aa similar to IS240C.
References
1] Lapidus,A., Goltsman,E., Copeland,A., Lucas,S., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M., Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D., Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A. (2007) Direct Submission GenBank.

2] ISfinder annotation (2008).