ISCro4
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Citrobacter rodentium | Citrobacter rodentium ICC168 |
DNA section
IS Length : 1295 bp
Ends
Left end : CTTATCAGGCCTTGTATTATCCCTTCAGTGCAGGGAGAACCGGCCAGTTCTCTCTGCCATGCGGTCCGCATGCCGTATCAGGCCTCAGGCTAATAACCTG
Right end : GAAGGGATGAAAAAACAGCGCCTGACGGCGCTGTGACTGGTATGCCTGCAATCCGGTAAGGCGGAAAATAAAAAAGCTTGCAGGCGATAACAGTATCTAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CTTATCAGGCCTTGTATTATCCCTTCAGTGCAGGGAGAACCGGCCAGTTCTCTCTGCCATGCGGTCCGCATGCCGTATCAGGCCTCAGGCTAATAACCTG
TGACGTAGATTTATGCAGCGGACCGCCGTTCTCCACAAGTGACAAACCGGACAGTATCATGGACCGGTTTTCCCGGTAATCCGCATTCACAAGGCTGGTC
TCACTATGGAACAGGAACTTCATTTTATCGGTATCGATGTCTCTAAAGCTAAGCTGGATGTCGATGTGTTGCGGCCTGATGGCCGTCACCGCAGCAAAAA
ATTTGCCAACACCCCGAAGGGCCACGACGAACTTCTCCGCTGGCTCAGCGGTCATCGCGTGGCACCGGCACATATCTGCATGGAAGCCACCAGTACGTAT
ATGGAAGACGTTGCCGCTCATCTCAGTGATGCCGGTTACACCGTCTCCGTCATCAACCCCGCCCTGGGTAAAGCCTTTGCACAGAGTGAAGGTCTGCGCA
GCAAAACCGATGCAGTGGATGCCCGTATGCTGGCAGAGTTCTGTCGTCAGAAGCGCCCTCCGGCGTGGGAAGCCCCGCATCCGGTTGAACGGGCCCTGCG
GGCTCTGGTGCTGCGCCATCAGTCGCTGACGGACATGCACACGCAGGAGCTGAACCGCCTGGAGACAGCGCGTGAGGTGCAGCGTCCGAGTATAGACGCC
CATCTGCTGTGGCTTCATGCCGAACTTAAGCGCATCGAAAAGCAGATAAAGGACCTGACGGATGATGACCCGGATATGAAGCACCGCAGGAAGCTGCTGG
AAAGTATCCCGGGCATCGGGGAGAAAACGTCCGCGGTATTACTGGCTTATACCGGTCTGAAGGAGCGCTTCACCCATGCCAGGCAGTTCGCCGCTTTTGC
GGGTCTGACGCCGCGGCGGTATGAATCAGGCAGCAGTGTGAACAGGGCCAGCCGGATGAGTAAAGCCGGACATGCGTCGCTTCGCAGGGCGCTGTATATG
CCTGCGATGGTGGCGGTAAGTAAAACGGAATGGGGAAGAGCGTTCCGTGACCGTCTGGCAGGGAACGGTAAAAAAGGGAAAGTGATAATCGGTGCGATGA
TGCGCAAGCTGGCGCAGGTGGCGTACGGTGTTCTGAAGTCAGGCGTGCCGTTCGATGCGTCCCGGCATAATCCGGTAGCAGCGTAAAATATGGTGGAAGG
GATGAAAAAACAGCGCCTGACGGCGCTGTGACTGGTATGCCTGCAATCCGGTAAGGCGGAAAATAAAAAAGCTTGCAGGCGATAACAGTATCTAC
TGACGTAGATTTATGCAGCGGACCGCCGTTCTCCACAAGTGACAAACCGGACAGTATCATGGACCGGTTTTCCCGGTAATCCGCATTCACAAGGCTGGTC
TCACTATGGAACAGGAACTTCATTTTATCGGTATCGATGTCTCTAAAGCTAAGCTGGATGTCGATGTGTTGCGGCCTGATGGCCGTCACCGCAGCAAAAA
ATTTGCCAACACCCCGAAGGGCCACGACGAACTTCTCCGCTGGCTCAGCGGTCATCGCGTGGCACCGGCACATATCTGCATGGAAGCCACCAGTACGTAT
ATGGAAGACGTTGCCGCTCATCTCAGTGATGCCGGTTACACCGTCTCCGTCATCAACCCCGCCCTGGGTAAAGCCTTTGCACAGAGTGAAGGTCTGCGCA
GCAAAACCGATGCAGTGGATGCCCGTATGCTGGCAGAGTTCTGTCGTCAGAAGCGCCCTCCGGCGTGGGAAGCCCCGCATCCGGTTGAACGGGCCCTGCG
GGCTCTGGTGCTGCGCCATCAGTCGCTGACGGACATGCACACGCAGGAGCTGAACCGCCTGGAGACAGCGCGTGAGGTGCAGCGTCCGAGTATAGACGCC
CATCTGCTGTGGCTTCATGCCGAACTTAAGCGCATCGAAAAGCAGATAAAGGACCTGACGGATGATGACCCGGATATGAAGCACCGCAGGAAGCTGCTGG
AAAGTATCCCGGGCATCGGGGAGAAAACGTCCGCGGTATTACTGGCTTATACCGGTCTGAAGGAGCGCTTCACCCATGCCAGGCAGTTCGCCGCTTTTGC
GGGTCTGACGCCGCGGCGGTATGAATCAGGCAGCAGTGTGAACAGGGCCAGCCGGATGAGTAAAGCCGGACATGCGTCGCTTCGCAGGGCGCTGTATATG
CCTGCGATGGTGGCGGTAAGTAAAACGGAATGGGGAAGAGCGTTCCGTGACCGTCTGGCAGGGAACGGTAAAAAAGGGAAAGTGATAATCGGTGCGATGA
TGCGCAAGCTGGCGCAGGTGGCGTACGGTGTTCTGAAGTCAGGCGTGCCGTTCGATGCGTCCCGGCATAATCCGGTAGCAGCGTAAAATATGGTGGAAGG
GATGAAAAAACAGCGCCTGACGGCGCTGTGACTGGTATGCCTGCAATCCGGTAAGGCGGAAAATAAAAAAGCTTGCAGGCGATAACAGTATCTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 206 | 1186 | + | No |
Chemistry : DEDD
ORF sequence :
MEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLRWLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSK
TDAVDARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSIDAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLES
IPGIGEKTSAVLLAYTGLKERFTHARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFRDRLAGNGKKGKVIIGAMMR
KLAQVAYGVLKSGVPFDASRHNPVAA
TDAVDARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSIDAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLES
IPGIGEKTSAVLLAYTGLKERFTHARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFRDRLAGNGKKGKVIIGAMMR
KLAQVAYGVLKSGVPFDASRHNPVAA
Blast result :
Comments
ISCro4 is 53% aa similar to ISWen2.
13 copies of ISCro14 in C. rodentium genome, found at the following genomic locations:
57085..58379, 1226813..1228107, 1318882..1320176, 1393737..1395031, 2417218..2418512, 2629645..2630939, 3002145..3003439, 3191747..3193041, 3482797..3484091, 3659013..3660307, 3790751..3792045, 3916721..3918015, 4155955..4157249
13 copies of ISCro14 in C. rodentium genome, found at the following genomic locations:
57085..58379, 1226813..1228107, 1318882..1320176, 1393737..1395031, 2417218..2418512, 2629645..2630939, 3002145..3003439, 3191747..3193041, 3482797..3484091, 3659013..3660307, 3790751..3792045, 3916721..3918015, 4155955..4157249
References
1] Nicola Petty (2007) Direct submission