ISCro4

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Citrobacter rodentium
Citrobacter rodentium ICC168
DNA section
IS Length : 1295 bp

Ends


Left end : CTTATCAGGCCTTGTATTATCCCTTCAGTGCAGGGAGAACCGGCCAGTTCTCTCTGCCATGCGGTCCGCATGCCGTATCAGGCCTCAGGCTAATAACCTG
Right end : GAAGGGATGAAAAAACAGCGCCTGACGGCGCTGTGACTGGTATGCCTGCAATCCGGTAAGGCGGAAAATAAAAAAGCTTGCAGGCGATAACAGTATCTAC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CTTATCAGGCCTTGTATTATCCCTTCAGTGCAGGGAGAACCGGCCAGTTCTCTCTGCCATGCGGTCCGCATGCCGTATCAGGCCTCAGGCTAATAACCTG
TGACGTAGATTTATGCAGCGGACCGCCGTTCTCCACAAGTGACAAACCGGACAGTATCATGGACCGGTTTTCCCGGTAATCCGCATTCACAAGGCTGGTC
TCACTATGGAACAGGAACTTCATTTTATCGGTATCGATGTCTCTAAAGCTAAGCTGGATGTCGATGTGTTGCGGCCTGATGGCCGTCACCGCAGCAAAAA
ATTTGCCAACACCCCGAAGGGCCACGACGAACTTCTCCGCTGGCTCAGCGGTCATCGCGTGGCACCGGCACATATCTGCATGGAAGCCACCAGTACGTAT
ATGGAAGACGTTGCCGCTCATCTCAGTGATGCCGGTTACACCGTCTCCGTCATCAACCCCGCCCTGGGTAAAGCCTTTGCACAGAGTGAAGGTCTGCGCA
GCAAAACCGATGCAGTGGATGCCCGTATGCTGGCAGAGTTCTGTCGTCAGAAGCGCCCTCCGGCGTGGGAAGCCCCGCATCCGGTTGAACGGGCCCTGCG
GGCTCTGGTGCTGCGCCATCAGTCGCTGACGGACATGCACACGCAGGAGCTGAACCGCCTGGAGACAGCGCGTGAGGTGCAGCGTCCGAGTATAGACGCC
CATCTGCTGTGGCTTCATGCCGAACTTAAGCGCATCGAAAAGCAGATAAAGGACCTGACGGATGATGACCCGGATATGAAGCACCGCAGGAAGCTGCTGG
AAAGTATCCCGGGCATCGGGGAGAAAACGTCCGCGGTATTACTGGCTTATACCGGTCTGAAGGAGCGCTTCACCCATGCCAGGCAGTTCGCCGCTTTTGC
GGGTCTGACGCCGCGGCGGTATGAATCAGGCAGCAGTGTGAACAGGGCCAGCCGGATGAGTAAAGCCGGACATGCGTCGCTTCGCAGGGCGCTGTATATG
CCTGCGATGGTGGCGGTAAGTAAAACGGAATGGGGAAGAGCGTTCCGTGACCGTCTGGCAGGGAACGGTAAAAAAGGGAAAGTGATAATCGGTGCGATGA
TGCGCAAGCTGGCGCAGGTGGCGTACGGTGTTCTGAAGTCAGGCGTGCCGTTCGATGCGTCCCGGCATAATCCGGTAGCAGCGTAAAATATGGTGGAAGG
GATGAAAAAACAGCGCCTGACGGCGCTGTGACTGGTATGCCTGCAATCCGGTAAGGCGGAAAATAAAAAAGCTTGCAGGCGATAACAGTATCTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa2061186+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLRWLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSK
TDAVDARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSIDAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLES
IPGIGEKTSAVLLAYTGLKERFTHARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFRDRLAGNGKKGKVIIGAMMR
KLAQVAYGVLKSGVPFDASRHNPVAA

 

Blast result :
Comments
ISCro4 is 53% aa similar to ISWen2.
13 copies of ISCro14 in C. rodentium genome, found at the following genomic locations:
57085..58379, 1226813..1228107, 1318882..1320176, 1393737..1395031, 2417218..2418512, 2629645..2630939, 3002145..3003439, 3191747..3193041, 3482797..3484091, 3659013..3660307, 3790751..3792045, 3916721..3918015, 4155955..4157249
References
1] Nicola Petty (2007) Direct submission