ISStag1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAUW01000024 ND Stappia aggregata
Stappia aggregata IAM 12614
DNA section
IS Length : 889 bp

Ends


IR Length : 17/18

IRL : GGCTCTGTTGCAAATTTTTGTCCGTGGTGTGAGAAGCAGCTTTTGCAGAG
IRR : GGCTCTGTTGCAAACTTTGCGTCCCGACAGATTTCGGCCTATTCCGGCAA

Insertion site


Left flankDirect repeatRight flankDR Length
CTGCAATAAGTAGGGTGCCGGGCGCAAGGCCATCGATGATGCTTTTGCCGTGGAATTATTC0

DNA sequence

GGCTCTGTTGCAAATTTTTGTCCGTGGTGTGAGAAGCAGCTTTTGCAGAGCAGGTTGTTGATTTCATGAATGCATTCAAGGGCCGTCATTTCACAGGCGA
AGTCGTGTTGTGGGTTGTTCGCTGGTATTGCCGGTATGGGGTCAGTTACCGGGATCTTGAGCAGATAATGGCCGAGCGCGGTGTGTGGGTCGATCATGCC
ACGATCTACCGGTGGGTGCAGACCTATGCGCCTGAAATGGAAAAACGGTTGCGCTGGCAATGGCGCCGACCGACTTCGGGCAGTTGGCGGGTCGATGAAA
CCTACATCAAGGTTCGCGGGAAATGGACCCATCTTTACCAGGCCGTGGACAAGTTCGGTAACACAATCGATTTCTATCTCTCGTTCACCCGGAACACCAA
GGCGGCGAAGCGGTTCCTGGGCAAAGCCTTAAGAGGCCTGAAAGACTGGGAAAAGCCCCATACGATCAACACCGACAAGGCCCCTACTTATGGTGCTGCC
ATTTCCGAGCTGAAGACGGAAGGCAAATGCGCCAAAGAAACCGAACATCGCCAGGTCAATTATCTCAACAAGATCGTCGAGGCCGATCACAGCAAGCTGA
AACAGCTGATCCAGCCGGTACGCGGTTTCGAGACCATGAAGTCTGCCTATGCGACTATCAAAGGATTTGAAGTGATGCGTGCTCTGCGCAAGGGGCAAGC
CGGCATCTTCAACTTCACAAATGACATTCTCGGCAAGGCTCGCATTGTCGAACGAGCGTTCGGCATCGGTCCCTGTGCTCTGGCTGAAGCGATGACCATG
CTCGAAAACCATCTTCAAGATGCTGAAGCTTGAACTGGATTGCCGGAATAGGCCGAAATCTGTCGGGACGCAAAGTTTGCAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
768 bp255 aa66833+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNAFKGRHFTGEVVLWVVRWYCRYGVSYRDLEQIMAERGVWVDHATIYRWVQTYAPEMEKRLRWQWRRPTSGSWRVDETYIKVRGKWTHLYQAVDKFGNT
IDFYLSFTRNTKAAKRFLGKALRGLKDWEKPHTINTDKAPTYGAAISELKTEGKCAKETEHRQVNYLNKIVEADHSKLKQLIQPVRGFETMKSAYATIKG
FEVMRALRKGQAGIFNFTNDILGKARIVERAFGIGPCALAEAMTMLENHLQDAEA

 

Blast result :
Comments
ISStag1 is 82% aa similar to IS6100.
References
1] King,G., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G.,
Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.