ISStag1
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAUW01000024 | ND | Stappia aggregata | Stappia aggregata IAM 12614 |
DNA section
IS Length : 889 bp
Ends
IR Length : 17/18
IRL : GGCTCTGTTGCAAATTTTTGTCCGTGGTGTGAGAAGCAGCTTTTGCAGAG
IRR : GGCTCTGTTGCAAACTTTGCGTCCCGACAGATTTCGGCCTATTCCGGCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGCAATAAGTAGGGTGCCGGGCGCAAGGC | CATCGATGATGCTTTTGCCGTGGAATTATTC | 0 |
DNA sequence
GGCTCTGTTGCAAATTTTTGTCCGTGGTGTGAGAAGCAGCTTTTGCAGAGCAGGTTGTTGATTTCATGAATGCATTCAAGGGCCGTCATTTCACAGGCGA
AGTCGTGTTGTGGGTTGTTCGCTGGTATTGCCGGTATGGGGTCAGTTACCGGGATCTTGAGCAGATAATGGCCGAGCGCGGTGTGTGGGTCGATCATGCC
ACGATCTACCGGTGGGTGCAGACCTATGCGCCTGAAATGGAAAAACGGTTGCGCTGGCAATGGCGCCGACCGACTTCGGGCAGTTGGCGGGTCGATGAAA
CCTACATCAAGGTTCGCGGGAAATGGACCCATCTTTACCAGGCCGTGGACAAGTTCGGTAACACAATCGATTTCTATCTCTCGTTCACCCGGAACACCAA
GGCGGCGAAGCGGTTCCTGGGCAAAGCCTTAAGAGGCCTGAAAGACTGGGAAAAGCCCCATACGATCAACACCGACAAGGCCCCTACTTATGGTGCTGCC
ATTTCCGAGCTGAAGACGGAAGGCAAATGCGCCAAAGAAACCGAACATCGCCAGGTCAATTATCTCAACAAGATCGTCGAGGCCGATCACAGCAAGCTGA
AACAGCTGATCCAGCCGGTACGCGGTTTCGAGACCATGAAGTCTGCCTATGCGACTATCAAAGGATTTGAAGTGATGCGTGCTCTGCGCAAGGGGCAAGC
CGGCATCTTCAACTTCACAAATGACATTCTCGGCAAGGCTCGCATTGTCGAACGAGCGTTCGGCATCGGTCCCTGTGCTCTGGCTGAAGCGATGACCATG
CTCGAAAACCATCTTCAAGATGCTGAAGCTTGAACTGGATTGCCGGAATAGGCCGAAATCTGTCGGGACGCAAAGTTTGCAACAGAGCC
AGTCGTGTTGTGGGTTGTTCGCTGGTATTGCCGGTATGGGGTCAGTTACCGGGATCTTGAGCAGATAATGGCCGAGCGCGGTGTGTGGGTCGATCATGCC
ACGATCTACCGGTGGGTGCAGACCTATGCGCCTGAAATGGAAAAACGGTTGCGCTGGCAATGGCGCCGACCGACTTCGGGCAGTTGGCGGGTCGATGAAA
CCTACATCAAGGTTCGCGGGAAATGGACCCATCTTTACCAGGCCGTGGACAAGTTCGGTAACACAATCGATTTCTATCTCTCGTTCACCCGGAACACCAA
GGCGGCGAAGCGGTTCCTGGGCAAAGCCTTAAGAGGCCTGAAAGACTGGGAAAAGCCCCATACGATCAACACCGACAAGGCCCCTACTTATGGTGCTGCC
ATTTCCGAGCTGAAGACGGAAGGCAAATGCGCCAAAGAAACCGAACATCGCCAGGTCAATTATCTCAACAAGATCGTCGAGGCCGATCACAGCAAGCTGA
AACAGCTGATCCAGCCGGTACGCGGTTTCGAGACCATGAAGTCTGCCTATGCGACTATCAAAGGATTTGAAGTGATGCGTGCTCTGCGCAAGGGGCAAGC
CGGCATCTTCAACTTCACAAATGACATTCTCGGCAAGGCTCGCATTGTCGAACGAGCGTTCGGCATCGGTCCCTGTGCTCTGGCTGAAGCGATGACCATG
CTCGAAAACCATCTTCAAGATGCTGAAGCTTGAACTGGATTGCCGGAATAGGCCGAAATCTGTCGGGACGCAAAGTTTGCAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
768 bp | 255 aa | 66 | 833 | + | No |
Chemistry : DDE
ORF sequence :
MNAFKGRHFTGEVVLWVVRWYCRYGVSYRDLEQIMAERGVWVDHATIYRWVQTYAPEMEKRLRWQWRRPTSGSWRVDETYIKVRGKWTHLYQAVDKFGNT
IDFYLSFTRNTKAAKRFLGKALRGLKDWEKPHTINTDKAPTYGAAISELKTEGKCAKETEHRQVNYLNKIVEADHSKLKQLIQPVRGFETMKSAYATIKG
FEVMRALRKGQAGIFNFTNDILGKARIVERAFGIGPCALAEAMTMLENHLQDAEA
IDFYLSFTRNTKAAKRFLGKALRGLKDWEKPHTINTDKAPTYGAAISELKTEGKCAKETEHRQVNYLNKIVEADHSKLKQLIQPVRGFETMKSAYATIKG
FEVMRALRKGQAGIFNFTNDILGKARIVERAFGIGPCALAEAMTMLENHLQDAEA
Blast result :
Comments
ISStag1 is 82% aa similar to IS6100.
References
1] King,G., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G.,
Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.
Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.