ISVisp6
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Vibrio splendidus | Vibrio splendidus Gr15 |
DNA section
IS Length : 1364 bp
Ends
IR Length : 14/14
IRL : acgaatgACATGGATTCCCCCTACCGAGGATCTGCCACACTTATGTGGTA
IRR : ----gctACATGGATTCCCCCGGTTGTCAAACATCCGCTAAACTTATGTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
ACGAATGACATGGATTCCCCCTACCGAGGATCTGCCACACTTATGTGGTACTTAAATGCATCGGAGGCACCATGTCTGATTATTCTTATTTCTGCGGTAT
CGACCTAGCTAAAAACCACTTTAGTCTTCATGCCGTAGACCAAAATGGTAAGGTCATACTTCATAAGTCAGTAACTCGCTCTAAACTACTGACTACAATA
GCAAATATGCCACTCATGCGTATAGGCGTTGAAGCGTGTGGTGGTGCACATTATTGGGCAAGAACACTCAATAAACTTGGGCACGACGCCCGCATTATGG
CTGTTAAATACGTAATTCCTTATCGAACTAAGGGAAAGAACGACCTTAATGATGCTGTTGCTATCTGCGAAGCTGTTCAGCGACCATCTACTCGCTTTGT
GCCTGTAAAATCCCCCGAGCAACAAGCCATCTTATCGGTACATAGAATGAGAGAGCATTGGGTTCGTGAGCGCACCGCGCTTATGAATCGCATGCGTGCC
CTACTTTCTGAGTTCGGGTTAACCATTCCTGTTGGCCGCTCTTCATTAATGAAACAGGTTCCCTTAATGCTGGAAGACGCAGAAAATGAACTACCACACC
TCGCGAGAACAGTGATTGCCGATGCTTATCGCCACCTTGGTGAATTGAATCAACGTATCGCCGATACTGAACAAGTCTTCGATTCTTTTGCTAAGGTCAG
CATTAATGTTCAACGAGTGATGAAAGTTCGGGGCATTGGACCGCAAACCGCTACTGCGATACTTGCTTCGATAGGCAATGGTTCTCAATTTGATAAAAGC
CGTGATTTCTCTGCTTGGCTAGGACTAGTACCAAAGCAATATTCGACGGGAGGAAAGCCTCGCTTAGGTCGGATAACCAAACACGGCGACAAATACTTGC
GAACACTATTAGTTCACGGGGCAAGGACAGTCATTGCCAACCTTGGCGACAAGCAAGATAAGCTAAGTCAGTGGTGTCGAGGCGTTCTAGAACGAAGAGG
AATGAACCGAGCGATAGTGGCACTTGCCGCGAAGAACGCACGAATTATATGGTCGCTTTTACACAATCAAACCGAATATGAAAACTATGCTGCTTAAGTA
GAAACCTAAGCAGCATAAAGAGTTAAACCCACCGGGTCATTGCAGACGCTAATGATGGAGATAGGTTAAGACCACTTGCGGAGAGCCTGTTAATGCGGCG
GACACACTAGATGTCATCTAACGAATAAGGCACCGCAGTCGCGCAAGTCATCAGGGCCACGACGTATGCGAATCGTCGATAAGTAGGCCGAATGTAGAGC
GGCAGTCCAAAACCCATCAACATAAGTTTAGCGGATGTTTGACAACCGGGGGAATCCATGTAGC
CGACCTAGCTAAAAACCACTTTAGTCTTCATGCCGTAGACCAAAATGGTAAGGTCATACTTCATAAGTCAGTAACTCGCTCTAAACTACTGACTACAATA
GCAAATATGCCACTCATGCGTATAGGCGTTGAAGCGTGTGGTGGTGCACATTATTGGGCAAGAACACTCAATAAACTTGGGCACGACGCCCGCATTATGG
CTGTTAAATACGTAATTCCTTATCGAACTAAGGGAAAGAACGACCTTAATGATGCTGTTGCTATCTGCGAAGCTGTTCAGCGACCATCTACTCGCTTTGT
GCCTGTAAAATCCCCCGAGCAACAAGCCATCTTATCGGTACATAGAATGAGAGAGCATTGGGTTCGTGAGCGCACCGCGCTTATGAATCGCATGCGTGCC
CTACTTTCTGAGTTCGGGTTAACCATTCCTGTTGGCCGCTCTTCATTAATGAAACAGGTTCCCTTAATGCTGGAAGACGCAGAAAATGAACTACCACACC
TCGCGAGAACAGTGATTGCCGATGCTTATCGCCACCTTGGTGAATTGAATCAACGTATCGCCGATACTGAACAAGTCTTCGATTCTTTTGCTAAGGTCAG
CATTAATGTTCAACGAGTGATGAAAGTTCGGGGCATTGGACCGCAAACCGCTACTGCGATACTTGCTTCGATAGGCAATGGTTCTCAATTTGATAAAAGC
CGTGATTTCTCTGCTTGGCTAGGACTAGTACCAAAGCAATATTCGACGGGAGGAAAGCCTCGCTTAGGTCGGATAACCAAACACGGCGACAAATACTTGC
GAACACTATTAGTTCACGGGGCAAGGACAGTCATTGCCAACCTTGGCGACAAGCAAGATAAGCTAAGTCAGTGGTGTCGAGGCGTTCTAGAACGAAGAGG
AATGAACCGAGCGATAGTGGCACTTGCCGCGAAGAACGCACGAATTATATGGTCGCTTTTACACAATCAAACCGAATATGAAAACTATGCTGCTTAAGTA
GAAACCTAAGCAGCATAAAGAGTTAAACCCACCGGGTCATTGCAGACGCTAATGATGGAGATAGGTTAAGACCACTTGCGGAGAGCCTGTTAATGCGGCG
GACACACTAGATGTCATCTAACGAATAAGGCACCGCAGTCGCGCAAGTCATCAGGGCCACGACGTATGCGAATCGTCGATAAGTAGGCCGAATGTAGAGC
GGCAGTCCAAAACCCATCAACATAAGTTTAGCGGATGTTTGACAACCGGGGGAATCCATGTAGC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1026 bp | 341 aa | 72 | 1097 | + | No |
Chemistry : DEDD
ORF sequence :
MSDYSYFCGIDLAKNHFSLHAVDQNGKVILHKSVTRSKLLTTIANMPLMRIGVEACGGAHYWARTLNKLGHDARIMAVKYVIPYRTKGKNDLNDAVAICE
AVQRPSTRFVPVKSPEQQAILSVHRMREHWVRERTALMNRMRALLSEFGLTIPVGRSSLMKQVPLMLEDAENELPHLARTVIADAYRHLGELNQRIADTE
QVFDSFAKVSINVQRVMKVRGIGPQTATAILASIGNGSQFDKSRDFSAWLGLVPKQYSTGGKPRLGRITKHGDKYLRTLLVHGARTVIANLGDKQDKLSQ
WCRGVLERRGMNRAIVALAAKNARIIWSLLHNQTEYENYAA
AVQRPSTRFVPVKSPEQQAILSVHRMREHWVRERTALMNRMRALLSEFGLTIPVGRSSLMKQVPLMLEDAENELPHLARTVIADAYRHLGELNQRIADTE
QVFDSFAKVSINVQRVMKVRGIGPQTATAILASIGNGSQFDKSRDFSAWLGLVPKQYSTGGKPRLGRITKHGDKYLRTLLVHGARTVIANLGDKQDKLSQ
WCRGVLERRGMNRAIVALAAKNARIIWSLLHNQTEYENYAA
Blast result :
Comments
ISVisp6 is 66% aa similar to ISShdy1.
The IR of this IS are not at its termini. In the IS sequence as given 7 nt separate IRL from the left-hand end of the element and 3 nt separate IRR from the right-hand end.
The IR of this IS are not at its termini. In the IS sequence as given 7 nt separate IRL from the left-hand end of the element and 3 nt separate IRR from the right-hand end.
References
1] Binesse, J. (2007) Direct submission.