ISSfr2

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DQ060002 ND Sinorhizobium fredii
Sinorhizobium fredii HH103
DNA section
IS Length : 1534 bp

Ends


IR Length : 10/10

IRL : gactaaaATGTTCGCCTGGGGCTGGGTGACCCGTCTCACAATATGCAGGT
IRR : ----ctcATGTTCGCCTTTTCAAGCAGCAGGCATAGAAATTCTCCCGCCC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GACTAAATGTTCGCCTGGGGCTGGGTGACCCGTCTCACAATATGCAGGTATCGAGGGTTGCGAGAGCGATCCTCTCGTAGAGCCTCATGCATAGGAGACG
GGCCATGGACGAGACTATCACATACGTCGGATTGGATGTTCACAAAGAAACGATTTCGGTGGCACTTGCCGATGGCGGTAAGCGCGGTGACGTGCGCGCG
TTTGGCCAGATCGTAAACACACCAACGGCCTTGGCCCGCATGCTGGCGAAGCTTTCGCAGTCGGGGCGGACGCTGAAGTTTTGCTACGAAGCCGGACCTT
GCGGCTACGGCATTCAGCGGCAACTGTCTGCCGCGGGCCATCACTGCGTAGTTGTCGCCCCGTCTTTGATCCCTCGAAAGCCAGGCGATCGCATCAAGAC
GGACCGCCGGGATGCCGACAATCTGGCAAGGCTTCATCGCGCTGGGGAGCTGAGCGCCGTCTGGATCCCCGATCCCGCCCATGAGGCAATGCGCGATCTG
GTGCGGGCACGCCTGGCTGCCGTGCGCAGCCTGCGACAGGCGCGCCAGCAACTCAGTGGATTCCTGCTGCGCCATGGCTGCCATTATGGCCGTCCAGCCT
GGACGCAGATGCACCGCCGCTGGCTGGCCGGTCTTCGCTTCACGCAACCAGCCCACCACATTGTGCTTGAGGATCATATCGCGACGATCGAGGCTGCGAC
GGACCGGCGCGATCGGCTGACGAAGCAAATCGAGATCATGTTGAGCGATTGGTCATTGGCCCCGGTCGTCCAGGCGCTGCAATCGCTGCGCGGCATGGCT
CTGGTGACCGCAGCAACGATGATTGCCGAATTGGGCGATATCAGTCGCTTTACCAATCCGCGTCAACTGATGGCCTATCTGGGGCTCGTCCCATCGGAGC
ATTCGAGCGGCGCAACCCGACGCCAGGGCGGCATTACAAAAGCGGGGAACGGAACCGCACGCCGCATGTTGATCGAGGCGGCCTGGAGCTACCGGTTTCC
CGCAAGGGTGAGCCGCGAGCAATTGCTGCGCCAGGAGCAGCTTCCAAAAACGATCCGCGACACGGCGTGGAAAGCGCAGGAGCGGCTCTGCGGCCGCTAT
CGCAAGCTCACCAAGGCCGGAAAGCCGGCCACGACGGTAACCACGGCGATCGCGCGCGAATTATCGGGCTTCGTCTGGGCGATTGCATGCCAGGTCTCAC
CGCGTTGAACATCGCCAAATCTTAGGAAAGCAAAGAGGAGGAACGAACCCATCAGAAGCCATGTGCACCTGGGCAAGGCTGGGGGCACGGTCACGGCAGG
AGAACCCTCGTTTCCACTATCAGCCGGTTTAATTCCGACGCTGCCAACTAGACTGAGGAAGCTCCGCGACGCATCAGGTCCGGCGGTACTCAACCCGCGT
ATCAGAGCATGATCAACCGTCGTTCATTGACCGTGCCTCCTGCTTTCCCCAGGACGCACTCATGCGAAACACGACGTCCGAGAAAATCGGGCGGGAGAAT
TTCTATGCCTGCTGCTTGAAAAGGCGAACATGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1104 bp367 aa1051208+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDETITYVGLDVHKETISVALADGGKRGDVRAFGQIVNTPTALARMLAKLSQSGRTLKFCYEAGPCGYGIQRQLSAAGHHCVVVAPSLIPRKPGDRIKTD
RRDADNLARLHRAGELSAVWIPDPAHEAMRDLVRARLAAVRSLRQARQQLSGFLLRHGCHYGRPAWTQMHRRWLAGLRFTQPAHHIVLEDHIATIEAATD
RRDRLTKQIEIMLSDWSLAPVVQALQSLRGMALVTAATMIAELGDISRFTNPRQLMAYLGLVPSEHSSGATRRQGGITKAGNGTARRMLIEAAWSYRFPA
RVSREQLLRQEQLPKTIRDTAWKAQERLCGRYRKLTKAGKPATTVTTAIARELSGFVWAIACQVSPR

 

Blast result :
Comments
IS predicted by protein homology to transposases.The IR of this IS are not at its termini. IRL is separated 7 nt from the left-hand end of the element in the IS sequence as given and 3 nt separate IRR from the right-hand end. No insertion sites nor DRs found.
ISSfr2 is 64% aa similar to ISVisp2.
References