ISSfr2
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DQ060002 | ND | Sinorhizobium fredii | Sinorhizobium fredii HH103 |
DNA section
IS Length : 1534 bp
Ends
IR Length : 10/10
IRL : gactaaaATGTTCGCCTGGGGCTGGGTGACCCGTCTCACAATATGCAGGT
IRR : ----ctcATGTTCGCCTTTTCAAGCAGCAGGCATAGAAATTCTCCCGCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GACTAAATGTTCGCCTGGGGCTGGGTGACCCGTCTCACAATATGCAGGTATCGAGGGTTGCGAGAGCGATCCTCTCGTAGAGCCTCATGCATAGGAGACG
GGCCATGGACGAGACTATCACATACGTCGGATTGGATGTTCACAAAGAAACGATTTCGGTGGCACTTGCCGATGGCGGTAAGCGCGGTGACGTGCGCGCG
TTTGGCCAGATCGTAAACACACCAACGGCCTTGGCCCGCATGCTGGCGAAGCTTTCGCAGTCGGGGCGGACGCTGAAGTTTTGCTACGAAGCCGGACCTT
GCGGCTACGGCATTCAGCGGCAACTGTCTGCCGCGGGCCATCACTGCGTAGTTGTCGCCCCGTCTTTGATCCCTCGAAAGCCAGGCGATCGCATCAAGAC
GGACCGCCGGGATGCCGACAATCTGGCAAGGCTTCATCGCGCTGGGGAGCTGAGCGCCGTCTGGATCCCCGATCCCGCCCATGAGGCAATGCGCGATCTG
GTGCGGGCACGCCTGGCTGCCGTGCGCAGCCTGCGACAGGCGCGCCAGCAACTCAGTGGATTCCTGCTGCGCCATGGCTGCCATTATGGCCGTCCAGCCT
GGACGCAGATGCACCGCCGCTGGCTGGCCGGTCTTCGCTTCACGCAACCAGCCCACCACATTGTGCTTGAGGATCATATCGCGACGATCGAGGCTGCGAC
GGACCGGCGCGATCGGCTGACGAAGCAAATCGAGATCATGTTGAGCGATTGGTCATTGGCCCCGGTCGTCCAGGCGCTGCAATCGCTGCGCGGCATGGCT
CTGGTGACCGCAGCAACGATGATTGCCGAATTGGGCGATATCAGTCGCTTTACCAATCCGCGTCAACTGATGGCCTATCTGGGGCTCGTCCCATCGGAGC
ATTCGAGCGGCGCAACCCGACGCCAGGGCGGCATTACAAAAGCGGGGAACGGAACCGCACGCCGCATGTTGATCGAGGCGGCCTGGAGCTACCGGTTTCC
CGCAAGGGTGAGCCGCGAGCAATTGCTGCGCCAGGAGCAGCTTCCAAAAACGATCCGCGACACGGCGTGGAAAGCGCAGGAGCGGCTCTGCGGCCGCTAT
CGCAAGCTCACCAAGGCCGGAAAGCCGGCCACGACGGTAACCACGGCGATCGCGCGCGAATTATCGGGCTTCGTCTGGGCGATTGCATGCCAGGTCTCAC
CGCGTTGAACATCGCCAAATCTTAGGAAAGCAAAGAGGAGGAACGAACCCATCAGAAGCCATGTGCACCTGGGCAAGGCTGGGGGCACGGTCACGGCAGG
AGAACCCTCGTTTCCACTATCAGCCGGTTTAATTCCGACGCTGCCAACTAGACTGAGGAAGCTCCGCGACGCATCAGGTCCGGCGGTACTCAACCCGCGT
ATCAGAGCATGATCAACCGTCGTTCATTGACCGTGCCTCCTGCTTTCCCCAGGACGCACTCATGCGAAACACGACGTCCGAGAAAATCGGGCGGGAGAAT
TTCTATGCCTGCTGCTTGAAAAGGCGAACATGAG
GGCCATGGACGAGACTATCACATACGTCGGATTGGATGTTCACAAAGAAACGATTTCGGTGGCACTTGCCGATGGCGGTAAGCGCGGTGACGTGCGCGCG
TTTGGCCAGATCGTAAACACACCAACGGCCTTGGCCCGCATGCTGGCGAAGCTTTCGCAGTCGGGGCGGACGCTGAAGTTTTGCTACGAAGCCGGACCTT
GCGGCTACGGCATTCAGCGGCAACTGTCTGCCGCGGGCCATCACTGCGTAGTTGTCGCCCCGTCTTTGATCCCTCGAAAGCCAGGCGATCGCATCAAGAC
GGACCGCCGGGATGCCGACAATCTGGCAAGGCTTCATCGCGCTGGGGAGCTGAGCGCCGTCTGGATCCCCGATCCCGCCCATGAGGCAATGCGCGATCTG
GTGCGGGCACGCCTGGCTGCCGTGCGCAGCCTGCGACAGGCGCGCCAGCAACTCAGTGGATTCCTGCTGCGCCATGGCTGCCATTATGGCCGTCCAGCCT
GGACGCAGATGCACCGCCGCTGGCTGGCCGGTCTTCGCTTCACGCAACCAGCCCACCACATTGTGCTTGAGGATCATATCGCGACGATCGAGGCTGCGAC
GGACCGGCGCGATCGGCTGACGAAGCAAATCGAGATCATGTTGAGCGATTGGTCATTGGCCCCGGTCGTCCAGGCGCTGCAATCGCTGCGCGGCATGGCT
CTGGTGACCGCAGCAACGATGATTGCCGAATTGGGCGATATCAGTCGCTTTACCAATCCGCGTCAACTGATGGCCTATCTGGGGCTCGTCCCATCGGAGC
ATTCGAGCGGCGCAACCCGACGCCAGGGCGGCATTACAAAAGCGGGGAACGGAACCGCACGCCGCATGTTGATCGAGGCGGCCTGGAGCTACCGGTTTCC
CGCAAGGGTGAGCCGCGAGCAATTGCTGCGCCAGGAGCAGCTTCCAAAAACGATCCGCGACACGGCGTGGAAAGCGCAGGAGCGGCTCTGCGGCCGCTAT
CGCAAGCTCACCAAGGCCGGAAAGCCGGCCACGACGGTAACCACGGCGATCGCGCGCGAATTATCGGGCTTCGTCTGGGCGATTGCATGCCAGGTCTCAC
CGCGTTGAACATCGCCAAATCTTAGGAAAGCAAAGAGGAGGAACGAACCCATCAGAAGCCATGTGCACCTGGGCAAGGCTGGGGGCACGGTCACGGCAGG
AGAACCCTCGTTTCCACTATCAGCCGGTTTAATTCCGACGCTGCCAACTAGACTGAGGAAGCTCCGCGACGCATCAGGTCCGGCGGTACTCAACCCGCGT
ATCAGAGCATGATCAACCGTCGTTCATTGACCGTGCCTCCTGCTTTCCCCAGGACGCACTCATGCGAAACACGACGTCCGAGAAAATCGGGCGGGAGAAT
TTCTATGCCTGCTGCTTGAAAAGGCGAACATGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1104 bp | 367 aa | 105 | 1208 | + | No |
Chemistry : DEDD
ORF sequence :
MDETITYVGLDVHKETISVALADGGKRGDVRAFGQIVNTPTALARMLAKLSQSGRTLKFCYEAGPCGYGIQRQLSAAGHHCVVVAPSLIPRKPGDRIKTD
RRDADNLARLHRAGELSAVWIPDPAHEAMRDLVRARLAAVRSLRQARQQLSGFLLRHGCHYGRPAWTQMHRRWLAGLRFTQPAHHIVLEDHIATIEAATD
RRDRLTKQIEIMLSDWSLAPVVQALQSLRGMALVTAATMIAELGDISRFTNPRQLMAYLGLVPSEHSSGATRRQGGITKAGNGTARRMLIEAAWSYRFPA
RVSREQLLRQEQLPKTIRDTAWKAQERLCGRYRKLTKAGKPATTVTTAIARELSGFVWAIACQVSPR
RRDADNLARLHRAGELSAVWIPDPAHEAMRDLVRARLAAVRSLRQARQQLSGFLLRHGCHYGRPAWTQMHRRWLAGLRFTQPAHHIVLEDHIATIEAATD
RRDRLTKQIEIMLSDWSLAPVVQALQSLRGMALVTAATMIAELGDISRFTNPRQLMAYLGLVPSEHSSGATRRQGGITKAGNGTARRMLIEAAWSYRFPA
RVSREQLLRQEQLPKTIRDTAWKAQERLCGRYRKLTKAGKPATTVTTAIARELSGFVWAIACQVSPR
Blast result :
Comments
IS predicted by protein homology to transposases.The IR of this IS are not at its termini. IRL is separated 7 nt from the left-hand end of the element in the IS sequence as given and 3 nt separate IRR from the right-hand end. No insertion sites nor DRs found.
ISSfr2 is 64% aa similar to ISVisp2.
ISSfr2 is 64% aa similar to ISVisp2.
References