ISKpn6

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Klebsiella pneumoniae
Klebsiella pneumoniae
Pseudomonas aeruginosa plasmid
Enterobactericeae plasmid
DNA section
IS Length : 1540 bp

Ends


IR Length : 16

IRL : GGAGCCTGCGCGGCAGAAGCCAAATCGGCGGAAGATCGAGGACGATACGG
IRR : GGAGTCTGCGCGGCAGAGCCGTGTGACCGGTTTTCTGTAGAGCACTGACG

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNTANNNNNNNNNN2

DNA sequence

GGAGCCTGCGCGGCAGAAGCCAAATCGGCGGAAGATCGAGGACGATACGGGGATGGCTGCCAGTTACCTTCCTTACCGACCCGACCAATCCTATCTGCTG
CCCCCTTCTCTGGGAGAGTGGCTACCTGAAGGGCATCTTGCCTACTTCATCAGCGAGACTGTCGATACGCTGGACTTGAGCGCATTCCACGCCCGGTATG
CCGGCGGTGGTCCGGGCAATCAGCCGTTTCATCCGGCGATGATGGTCAAAGTGCTGATCTATGGTTACGCGAGCGGCGTCTTCTCTTCGCGCAAACTAGC
CAGGAAGCTGTACGAGGATGTCGCGTTGCGTGTGCTGGCCGCTGGAAACTTCCCGGCCCACCGCACGCTGAGTGACTTCCGTGCCCTACACCTGACCGAG
CTTGAGAATTTGTTCGTTCAGGTGGTGCAACTGGCGCGCGAATGTGGGCTGGTGAAGCTTGGCACGATCGCGGTCGACGGCACCAAGGTAAAAGCCAACG
CCAGCCGCCACAAGGCGATGAGCTATAAGCGCATGAAGCCGGCCGAGGACGAATTGCATTGCGAGATCAAGGCGCTGCTTGATCGCGCCAAGGCTACCGA
CGACCAGGAGCGTAACGAGCCGGAGCTGGACATTCCTGCCGAGATTTCTCGCCGCGAGAAGCGCCTGGAGGCGATCCAGGCGGCAAAGGCGCGCCTGGAA
GCGCGCCAGCGTGAAGCGGACCAGGCCCGGGGGCGCAGCGAAGACGATGGCCGCCGGCCTCGCCATCCGGATGGCTCGGACAAGGGCGGTGGCTCGTACA
AACGCGAGTTTGGTGTGCCGGATGACCGTGATCAGGAAAGCTTCACCGATCCGGACAGCCGGATCATGAAACACGCCGGTGGTGGCTCCGAGCAGAGCTA
CAACGGGTACACAGCGGTCGATGCCGAGCACCAGATCATCGTGGCGGCGGAGTTGACCAACTGCGCCGCGGACAGTCAGGCGCTGCTGGGCATGCTGGCA
GCAGTTCAGGCCAACACCGGAGAAATGCCGGCCCAGACGCTGGCGGATGCGGGATTCCGTAGTGAGGCTGTTCTGGCAAAGGTCGCCGATCACCACGGCG
ATGTCATCGTTGCCCTCGGCCGCGAGGGACGTGAAGATGCCAAGGTCAATGCCAAGACCCATCCGCATACGGCGGCGATTGCGGCGAAATTGAAAACGGA
GCAAGGCGATGCAGCTTACCGCCGGCGCAAGTCGATCGTGGAGGCTCCGAATGGTTGGATCAAGGCGGTGATGGGATTGCGTCAGTTCAGCATGAGGGGC
CTGGACAAGGTGCAAGCCGAGTGGAAGCTCGTCTGCATGGCGCTAAATCTGAGGCGAATGGCGTATCTGTGAGGGCGAAGGTTAAATGGGGCGGCTCAAA
TGCACCCCAGTCGTCATAACACGCCGCGCGCCGCAAGATTGGTATCCTTGGCGCCGACGCCTTGCCAATTGCAGAGAGCGCCGCCGCCATCGTCAGTGCT
CTACAGAAAACCGGTCACACGGCTCTGCCGCGCAGACTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1320 bp439 aa531372+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAASYLPYRPDQSYLLPPSLGEWLPEGHLAYFISETVDTLDLSAFHARYAGGGPGNQPFHPAMMVKVLIYGYASGVFSSRKLARKLYEDVALRVLAAGNF
PAHRTLSDFRALHLTELENLFVQVVQLARECGLVKLGTIAVDGTKVKANASRHKAMSYKRMKPAEDELHCEIKALLDRAKATDDQERNEPELDIPAEISR
REKRLEAIQAAKARLEARQREADQARGRSEDDGRRPRHPDGSDKGGGSYKREFGVPDDRDQESFTDPDSRIMKHAGGGSEQSYNGYTAVDAEHQIIVAAE
LTNCAADSQALLGMLAAVQANTGEMPAQTLADAGFRSEAVLAKVADHHGDVIVALGREGREDAKVNAKTHPHTAAIAAKLKTEQGDAAYRRRKSIVEAPN
GWIKAVMGLRQFSMRGLDKVQAEWKLVCMALNLRRMAYL

 

Blast result :
Comments
ISKpn6 is 58% aa similar to ISSyth1.
File updated the March 26 2015 by ISfinder team.
References
1] Thierry Naas (2007) Direct submission.