ISPst7

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EF648209 ND Pseudomonas stutzeri
Pseudomonas stutzeri ATCC 17587
DNA section
IS Length : 1192 bp

Ends


IR Length : 14/20

IRL : GGAAACTCTGAAGAAGACTTCCTGATTTTGGCAAGATCCCCGGACTCCAC
IRR : GGATGGTCTGAAGTAGCCCTGTATTTCTGGCTGACTTCAGCCTCCGCCGA

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTTTGCTGCTAAAGATTGTCAG4

DNA sequence

GGAAACTCTGAAGAAGACTTCCTGATTTTGGCAAGATCCCCGGACTCCACTCACCGAGTTTTCCGATGAAGCAGATGACCTTCGCCGATGCCGAGTACGC
CGGCAAGCGCAAGCAGACCCGCAAAGAGCTGTTCCTGATCGAGATGGATCGGGTGGTGCCCTGGAAGGGGCTGATAGCCCTGATCGAACCGCACTACCCC
AAGGGTGAAGGCGGCCGTCCGGCCTATCCGCTGATGGCGATGCTGCGGGTGCATCTGCTGCAGAACTGGTTTGGCTACAGCGATCCGGCGATGGAAGAGG
CGCTGTACGAGACCACTATCCTGCGCCAGTTCGCTGGGCTGAACCTGGAGCGTATCCCCGACGAAACCACCATCCTGAACTTCCGTCGCCTGCTGGAGAA
ACACGAACTGGCTGCCGGCATCCTGGCCGTGATCAATGGCTACCTGGGCGACCGAGGTTTGTCGCTGCGCCAAGGCACCATCGTCGATGCCACGCTGATC
AATGCGCCGAGTTCGACCAAGAATAAAGACGGCAAACGCGACCCGGAAATGCACCAGACCAAGAAGGGTAACCAGTACTACTTCGGCATGAAGGCGCACA
TCGGCGTGGATGACGAGTCGGGTTTGGTGCACAGCGTAGTAGGCACTGCCGCCAACGTGGCGGACGTTACCCAAGTCGACAAGTTGTTGCATGGCGAGGA
AAACGTGGTCTGCGCTGATGCCGGTTATACCGGTGTCGAGAAGCGTGCCGAACATGATGGTCGTGAGGTGATCTGGCAGGTGGCGGCACGGCGCAGCACT
TACAAGAAACTGGGCAAGAGCAGCCCGCTTTACAAAGCCAGGCGCAAGATCGAGAAGGCCAAAGCCCAGGTGCGGGCCAAGGTCGAACACCCGTTCCGGG
TGATCAAGCGCCAATTTGGCTATGTGAAGACGCGCTTCCGTGGCCTGGCAAAGAACACCGCGCAACTGGTGACACTGTTCGCGCTGTCGAATCTGTGGAT
GGCTCGACGACATTTACTGACGAATGCAGGAGAGGTGCGCCTGTAATGTGGAAAATGGCTGCTGCGAGGTGCTCGCGGCGGCTAAAAACACAGAAATAAG
CGGGCGATCTGATCGTTTTTGATCGGTTGACCGCTTTCAAAATCGGCGGAGGCTGAAGTCAGCCAGAAATACAGGGCTACTTCAGACCATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
979 bp326 aa681046+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQMTFADAEYAGKRKQTRKELFLIEMDRVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRVHLLQNWFGYSDPAMEEALYETTILRQFAGLNLERIPDE
TTILNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGVDDESGLVHSVVGTAANVAD
VTQVDKLLHGEENVVCADAGYTGVEKRAEHDGREVIWQVAARRSTYKKLGKSSPLYKARRKIEKAKAQVRAKVEHPFRVIKRQFGYVKTRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTNAGEVRL

 

Blast result :
Comments
This element was observed in an integron gene cassette within the chromosome of Pseudomonas stutzeri ATCC 17587. ISPst7 is 97% aa similar to IS1384.
References
1] Sasha Tetu (2007) Direct submission.