ISPst7
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EF648209 | ND | Pseudomonas stutzeri | Pseudomonas stutzeri ATCC 17587 |
DNA section
IS Length : 1192 bp
Ends
IR Length : 14/20
IRL : GGAAACTCTGAAGAAGACTTCCTGATTTTGGCAAGATCCCCGGACTCCAC
IRR : GGATGGTCTGAAGTAGCCCTGTATTTCTGGCTGACTTCAGCCTCCGCCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTTTGCTG | CTAA | AGATTGTCAG | 4 |
DNA sequence
GGAAACTCTGAAGAAGACTTCCTGATTTTGGCAAGATCCCCGGACTCCACTCACCGAGTTTTCCGATGAAGCAGATGACCTTCGCCGATGCCGAGTACGC
CGGCAAGCGCAAGCAGACCCGCAAAGAGCTGTTCCTGATCGAGATGGATCGGGTGGTGCCCTGGAAGGGGCTGATAGCCCTGATCGAACCGCACTACCCC
AAGGGTGAAGGCGGCCGTCCGGCCTATCCGCTGATGGCGATGCTGCGGGTGCATCTGCTGCAGAACTGGTTTGGCTACAGCGATCCGGCGATGGAAGAGG
CGCTGTACGAGACCACTATCCTGCGCCAGTTCGCTGGGCTGAACCTGGAGCGTATCCCCGACGAAACCACCATCCTGAACTTCCGTCGCCTGCTGGAGAA
ACACGAACTGGCTGCCGGCATCCTGGCCGTGATCAATGGCTACCTGGGCGACCGAGGTTTGTCGCTGCGCCAAGGCACCATCGTCGATGCCACGCTGATC
AATGCGCCGAGTTCGACCAAGAATAAAGACGGCAAACGCGACCCGGAAATGCACCAGACCAAGAAGGGTAACCAGTACTACTTCGGCATGAAGGCGCACA
TCGGCGTGGATGACGAGTCGGGTTTGGTGCACAGCGTAGTAGGCACTGCCGCCAACGTGGCGGACGTTACCCAAGTCGACAAGTTGTTGCATGGCGAGGA
AAACGTGGTCTGCGCTGATGCCGGTTATACCGGTGTCGAGAAGCGTGCCGAACATGATGGTCGTGAGGTGATCTGGCAGGTGGCGGCACGGCGCAGCACT
TACAAGAAACTGGGCAAGAGCAGCCCGCTTTACAAAGCCAGGCGCAAGATCGAGAAGGCCAAAGCCCAGGTGCGGGCCAAGGTCGAACACCCGTTCCGGG
TGATCAAGCGCCAATTTGGCTATGTGAAGACGCGCTTCCGTGGCCTGGCAAAGAACACCGCGCAACTGGTGACACTGTTCGCGCTGTCGAATCTGTGGAT
GGCTCGACGACATTTACTGACGAATGCAGGAGAGGTGCGCCTGTAATGTGGAAAATGGCTGCTGCGAGGTGCTCGCGGCGGCTAAAAACACAGAAATAAG
CGGGCGATCTGATCGTTTTTGATCGGTTGACCGCTTTCAAAATCGGCGGAGGCTGAAGTCAGCCAGAAATACAGGGCTACTTCAGACCATCC
CGGCAAGCGCAAGCAGACCCGCAAAGAGCTGTTCCTGATCGAGATGGATCGGGTGGTGCCCTGGAAGGGGCTGATAGCCCTGATCGAACCGCACTACCCC
AAGGGTGAAGGCGGCCGTCCGGCCTATCCGCTGATGGCGATGCTGCGGGTGCATCTGCTGCAGAACTGGTTTGGCTACAGCGATCCGGCGATGGAAGAGG
CGCTGTACGAGACCACTATCCTGCGCCAGTTCGCTGGGCTGAACCTGGAGCGTATCCCCGACGAAACCACCATCCTGAACTTCCGTCGCCTGCTGGAGAA
ACACGAACTGGCTGCCGGCATCCTGGCCGTGATCAATGGCTACCTGGGCGACCGAGGTTTGTCGCTGCGCCAAGGCACCATCGTCGATGCCACGCTGATC
AATGCGCCGAGTTCGACCAAGAATAAAGACGGCAAACGCGACCCGGAAATGCACCAGACCAAGAAGGGTAACCAGTACTACTTCGGCATGAAGGCGCACA
TCGGCGTGGATGACGAGTCGGGTTTGGTGCACAGCGTAGTAGGCACTGCCGCCAACGTGGCGGACGTTACCCAAGTCGACAAGTTGTTGCATGGCGAGGA
AAACGTGGTCTGCGCTGATGCCGGTTATACCGGTGTCGAGAAGCGTGCCGAACATGATGGTCGTGAGGTGATCTGGCAGGTGGCGGCACGGCGCAGCACT
TACAAGAAACTGGGCAAGAGCAGCCCGCTTTACAAAGCCAGGCGCAAGATCGAGAAGGCCAAAGCCCAGGTGCGGGCCAAGGTCGAACACCCGTTCCGGG
TGATCAAGCGCCAATTTGGCTATGTGAAGACGCGCTTCCGTGGCCTGGCAAAGAACACCGCGCAACTGGTGACACTGTTCGCGCTGTCGAATCTGTGGAT
GGCTCGACGACATTTACTGACGAATGCAGGAGAGGTGCGCCTGTAATGTGGAAAATGGCTGCTGCGAGGTGCTCGCGGCGGCTAAAAACACAGAAATAAG
CGGGCGATCTGATCGTTTTTGATCGGTTGACCGCTTTCAAAATCGGCGGAGGCTGAAGTCAGCCAGAAATACAGGGCTACTTCAGACCATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
979 bp | 326 aa | 68 | 1046 | + | No |
Chemistry : DDE
ORF sequence :
MKQMTFADAEYAGKRKQTRKELFLIEMDRVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRVHLLQNWFGYSDPAMEEALYETTILRQFAGLNLERIPDE
TTILNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGVDDESGLVHSVVGTAANVAD
VTQVDKLLHGEENVVCADAGYTGVEKRAEHDGREVIWQVAARRSTYKKLGKSSPLYKARRKIEKAKAQVRAKVEHPFRVIKRQFGYVKTRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTNAGEVRL
TTILNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGVDDESGLVHSVVGTAANVAD
VTQVDKLLHGEENVVCADAGYTGVEKRAEHDGREVIWQVAARRSTYKKLGKSSPLYKARRKIEKAKAQVRAKVEHPFRVIKRQFGYVKTRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTNAGEVRL
Blast result :
Comments
This element was observed in an integron gene cassette within the chromosome of Pseudomonas stutzeri ATCC 17587. ISPst7 is 97% aa similar to IS1384.
References
1] Sasha Tetu (2007) Direct submission.