ISVsa10
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011313 | ND | Aliivibrio salmonicida | Aliivibrio salmonicida LFI1238 chromosome 2 |
DNA section
IS Length : 1545 bp
Ends
oriIS : GTTAAATCTGCCGAGCAAGCTCGAAGAGTGCGCTGCCTCGTAATTATCCCTCTTAAACATCTCCTTCATGGTTAGATTTACTGTATGAGTAAACATACAG II struct. : No
terIS : CAATCGAATCAATGCGATGCTTATAACATTCGGCGTTTGTGGTTTAAAGTGTATTTAGTGCTATTAATCCGTCGTTTACACGCATTATTCTAGGCGTTAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTATTGCGGC | ATGCTAAAGT |
DNA sequence
GTTAAATCTGCCGAGCAAGCTCGAAGAGTGCGCTGCCTCGTAATTATCCCTCTTAAACATCTCCTTCATGGTTAGATTTACTGTATGAGTAAACATACAG
TTCAAACCTTTTTACAAAAAAGGTTTGAATCATATTCGAAGAACCATCGACTCCCTTTATATCAACTTAAGGGGATCAGTCGGCTTTCATCTTGTCGAAC
TTCATCGATGGGAGGTCATGCGCTGTATTGTGATAATGGTCATCTCAATGGCTATTGGTACAACAGCTGCGGGCATCGAAGTTGCCCACAATGTGGTGCT
CTTAAAAGAGAGCAATGGCTTAAGAAAGTTGATTCGTTTATTTTAGATACTTCTCATCATCATTGGGTATTTACTCTTCCGCATGAGTTACATGAAATAT
GGCGATATAACAGAGCATTATGTCAGCAAACACTGTTTGACTCTGTACGTAAAACGATTCAGATATTAAGCGCGGATGAGCGATTTCTAGGTGCTAAGGT
TGGGTGTGTTTTGGCTCTACATACCTGGGCTCGAAATCTAACTTTTCATCCTCATCTTCATTGCTTAATTACTCATGGTGGATTGAGTGATGACGGTTGG
GTTGAACCAAAGAAAAGTATTCTATTTCCTGCCAGAGTTATGATGAAGCTGTTTCGCGGTAAGTTCATTGCAGCGCTACGCGCAGCAATGAATAAAGGAG
AGTTAAATTATCCTGACACGCTTTCAAAACAAGATGTTCTAAATCTTTTTAATAAATGGGGTGTTTTGGACTGGGTTGTTCATTGTGCAAAACCGTACTC
ACATGGTGCTGGCGTTGTTAAATATTTAGCGCGATATGTTCGTGGCGGAGCCATAAAAAACAGTCAAATTATGCACGTGTCGAACAAGGAAGTGCGAGTT
AAGTACAAATCTCATCAAACAAAGAAAACAGAAATGATTAGGCTAGAGCCTAATCATTTTATTGAGCGTATATTAAGTCATATAGCGATACCAAAAAAGC
AGCAATACCACTTTGTTGGTTTGTATCATAATCGATGTCGAGAGAGGCTGAATAAAGCTCGACAGTATCTTGGCCAAGAGCGGATAAAGGACATTAGTCC
TTTATTATGGCGAGAATACGCGGAAAGCAAAGAGCAGGTACCATGTTGTGATGAATGTGGAGGCAAGGTTACGGTATTGGCTCGATTCAAAGTGATAAAC
GGTGAATTTATTTTTTCATTGAAAATGTGATAAGGATTATTCTATTTCGTGTAGAAAGCTTGCTGCTGCAAGCGGTTCCAGTTATCGTGTGGTAGTTGGT
TTATTTACTTGAAATAAATAGATATTTAGATAAGTGAAATGAGTATTTCCCTTGTTTTAGCATATAGAAATCACAAAGACATCGGCGCAGGCTTGCTCGT
CAAATTTAACAGCTGCTGTAACCGAGTCACTAGTGGCAAATTTAACAATCGAATCAATGCGATGCTTATAACATTCGGCGTTTGTGGTTTAAAGTGTATT
TAGTGCTATTAATCCGTCGTTTACACGCATTATTCTAGGCGTTAC
TTCAAACCTTTTTACAAAAAAGGTTTGAATCATATTCGAAGAACCATCGACTCCCTTTATATCAACTTAAGGGGATCAGTCGGCTTTCATCTTGTCGAAC
TTCATCGATGGGAGGTCATGCGCTGTATTGTGATAATGGTCATCTCAATGGCTATTGGTACAACAGCTGCGGGCATCGAAGTTGCCCACAATGTGGTGCT
CTTAAAAGAGAGCAATGGCTTAAGAAAGTTGATTCGTTTATTTTAGATACTTCTCATCATCATTGGGTATTTACTCTTCCGCATGAGTTACATGAAATAT
GGCGATATAACAGAGCATTATGTCAGCAAACACTGTTTGACTCTGTACGTAAAACGATTCAGATATTAAGCGCGGATGAGCGATTTCTAGGTGCTAAGGT
TGGGTGTGTTTTGGCTCTACATACCTGGGCTCGAAATCTAACTTTTCATCCTCATCTTCATTGCTTAATTACTCATGGTGGATTGAGTGATGACGGTTGG
GTTGAACCAAAGAAAAGTATTCTATTTCCTGCCAGAGTTATGATGAAGCTGTTTCGCGGTAAGTTCATTGCAGCGCTACGCGCAGCAATGAATAAAGGAG
AGTTAAATTATCCTGACACGCTTTCAAAACAAGATGTTCTAAATCTTTTTAATAAATGGGGTGTTTTGGACTGGGTTGTTCATTGTGCAAAACCGTACTC
ACATGGTGCTGGCGTTGTTAAATATTTAGCGCGATATGTTCGTGGCGGAGCCATAAAAAACAGTCAAATTATGCACGTGTCGAACAAGGAAGTGCGAGTT
AAGTACAAATCTCATCAAACAAAGAAAACAGAAATGATTAGGCTAGAGCCTAATCATTTTATTGAGCGTATATTAAGTCATATAGCGATACCAAAAAAGC
AGCAATACCACTTTGTTGGTTTGTATCATAATCGATGTCGAGAGAGGCTGAATAAAGCTCGACAGTATCTTGGCCAAGAGCGGATAAAGGACATTAGTCC
TTTATTATGGCGAGAATACGCGGAAAGCAAAGAGCAGGTACCATGTTGTGATGAATGTGGAGGCAAGGTTACGGTATTGGCTCGATTCAAAGTGATAAAC
GGTGAATTTATTTTTTCATTGAAAATGTGATAAGGATTATTCTATTTCGTGTAGAAAGCTTGCTGCTGCAAGCGGTTCCAGTTATCGTGTGGTAGTTGGT
TTATTTACTTGAAATAAATAGATATTTAGATAAGTGAAATGAGTATTTCCCTTGTTTTAGCATATAGAAATCACAAAGACATCGGCGCAGGCTTGCTCGT
CAAATTTAACAGCTGCTGTAACCGAGTCACTAGTGGCAAATTTAACAATCGAATCAATGCGATGCTTATAACATTCGGCGTTTGTGGTTTAAAGTGTATT
TAGTGCTATTAATCCGTCGTTTACACGCATTATTCTAGGCGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1146 bp | 381 aa | 85 | 1230 | + | No |
Chemistry : Y2
ORF sequence :
MSKHTVQTFLQKRFESYSKNHRLPLYQLKGISRLSSCRTSSMGGHALYCDNGHLNGYWYNSCGHRSCPQCGALKREQWLKKVDSFILDTSHHHWVFTLPH
ELHEIWRYNRALCQQTLFDSVRKTIQILSADERFLGAKVGCVLALHTWARNLTFHPHLHCLITHGGLSDDGWVEPKKSILFPARVMMKLFRGKFIAALRA
AMNKGELNYPDTLSKQDVLNLFNKWGVLDWVVHCAKPYSHGAGVVKYLARYVRGGAIKNSQIMHVSNKEVRVKYKSHQTKKTEMIRLEPNHFIERILSHI
AIPKKQQYHFVGLYHNRCRERLNKARQYLGQERIKDISPLLWREYAESKEQVPCCDECGGKVTVLARFKVINGEFIFSLKM
ELHEIWRYNRALCQQTLFDSVRKTIQILSADERFLGAKVGCVLALHTWARNLTFHPHLHCLITHGGLSDDGWVEPKKSILFPARVMMKLFRGKFIAALRA
AMNKGELNYPDTLSKQDVLNLFNKWGVLDWVVHCAKPYSHGAGVVKYLARYVRGGAIKNSQIMHVSNKEVRVKYKSHQTKKTEMIRLEPNHFIERILSHI
AIPKKQQYHFVGLYHNRCRERLNKARQYLGQERIKDISPLLWREYAESKEQVPCCDECGGKVTVLARFKVINGEFIFSLKM
Blast result :
Comments
ISVsa10 is 55% aa similar to ISAzo26.
References
1] ISfinder annotation (2009)
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.