ISPsy19
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005773 | ND | Pseudomonas syringae | Pseudomonas syringae pv. phaseolicola 1448A |
DNA section
IS Length : 1178 bp
Ends
IR Length : 16/17
IRL : GAAGGTGTAGACAAAATAAATTAAACTTTCACTCCCTTGTCTGAATAGCC
IRR : GAGGGTGTAGACAAAATCATGTAGTGAGTCGGCGCGCGAGTATTCGAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTTTTTCAGAGTTTCCTTA | CTAGCTACATGTTATG | 0 |
DNA sequence
GAAGGTGTAGACAAAATAAATTAAACTTTCACTCCCTTGTCTGAATAGCCCTCAAGCCATGCCTAAAACCGGACGTCCTCGCTCGATTGCCGCCGAGCAC
TATCCCGTGCTGGTGAAACTCGCTCATGCACAGCCCTATTCCAGCCAGGCCGAATTGGCGCTCGTATTCTTCGCCGAAACCGGTATCACTGCGCATCCCG
ACACCTTTGCAAAAGCGTTGAAAATGGCAGGGATTACGCGTGTAAAGCAGCGGGCCAAGGGAAGTTTTCAGTCACCTGAACCTAATAAAGCCTATGGCTA
CAATGAAACCCACCGCCGCCAACTGCCGGAGCAGCTATATCCGAGTTGCTTGACAGATACCGAGTGGGCACTGGTCGCCGACCTGTTTGAAAGCCAGGGC
GGACGAGGAGTGCCACCGCTTCACTCTCGGCGCACGTTGCTGGAAGCCTGTTGCTATGTCGTACGCACGGGGTGCTCATGGCGAATGCTACCCCGCGATT
TTCCTCATTGGGACAATGTCTACAAAACGTTCCGCCGGTGGAGCGCTCAAGGCAAGTTCGAGCAAATGCATGATCGCTTGCGAGCTCAATGGCGTGAGCG
GGAAGAACGCGCTGACAGCCCGTCAGCAGCGATCCTGGATTCACAGTCGACCCGCAGTTCTCCTCAAGGCGGTGACAGCGGCTACGACGCAGGCAAAAAA
GTGAAGGGGCGTAAACGAAGTCTGATTGTCGATACATTGGGCCTGCTGCTGGCTGTCAGTATCAGTGCTGCAAGCGTGCAGGATCGTGACGCGGCGGATG
ATGCGGTGGCGTACTCGAAGGAAAAATATCCGTCACTGAGCACGCTTTTTGTTGATAGTGCGTACGCAGGAAAATGGGCACAGCGCACCCATCAACTGCA
CGCTATCGATGTTCAAGTGATCCGTGGCCCGAATAACAGAAGAACAGGGCAATGGCACTCTGAACAAGGCGATCTATTTTCCGTGGAGCCTGTTCAGACT
GGATTTGTGGTCATGCCCAAGCGATGGGTAGTGGAGCGAACTCATGCCTGGAATGAGAGAGCTCGGCGACTGATCATGCATCATGATCGCCTTTTTGCGG
TAAGCGAGGCATGGGTTTGGTTGGCCGAGGCTCGAATACTCGCGCGCCGACTCACTACATGATTTTGTCTACACCCTC
TATCCCGTGCTGGTGAAACTCGCTCATGCACAGCCCTATTCCAGCCAGGCCGAATTGGCGCTCGTATTCTTCGCCGAAACCGGTATCACTGCGCATCCCG
ACACCTTTGCAAAAGCGTTGAAAATGGCAGGGATTACGCGTGTAAAGCAGCGGGCCAAGGGAAGTTTTCAGTCACCTGAACCTAATAAAGCCTATGGCTA
CAATGAAACCCACCGCCGCCAACTGCCGGAGCAGCTATATCCGAGTTGCTTGACAGATACCGAGTGGGCACTGGTCGCCGACCTGTTTGAAAGCCAGGGC
GGACGAGGAGTGCCACCGCTTCACTCTCGGCGCACGTTGCTGGAAGCCTGTTGCTATGTCGTACGCACGGGGTGCTCATGGCGAATGCTACCCCGCGATT
TTCCTCATTGGGACAATGTCTACAAAACGTTCCGCCGGTGGAGCGCTCAAGGCAAGTTCGAGCAAATGCATGATCGCTTGCGAGCTCAATGGCGTGAGCG
GGAAGAACGCGCTGACAGCCCGTCAGCAGCGATCCTGGATTCACAGTCGACCCGCAGTTCTCCTCAAGGCGGTGACAGCGGCTACGACGCAGGCAAAAAA
GTGAAGGGGCGTAAACGAAGTCTGATTGTCGATACATTGGGCCTGCTGCTGGCTGTCAGTATCAGTGCTGCAAGCGTGCAGGATCGTGACGCGGCGGATG
ATGCGGTGGCGTACTCGAAGGAAAAATATCCGTCACTGAGCACGCTTTTTGTTGATAGTGCGTACGCAGGAAAATGGGCACAGCGCACCCATCAACTGCA
CGCTATCGATGTTCAAGTGATCCGTGGCCCGAATAACAGAAGAACAGGGCAATGGCACTCTGAACAAGGCGATCTATTTTCCGTGGAGCCTGTTCAGACT
GGATTTGTGGTCATGCCCAAGCGATGGGTAGTGGAGCGAACTCATGCCTGGAATGAGAGAGCTCGGCGACTGATCATGCATCATGATCGCCTTTTTGCGG
TAAGCGAGGCATGGGTTTGGTTGGCCGAGGCTCGAATACTCGCGCGCCGACTCACTACATGATTTTGTCTACACCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1104 bp | 367 aa | 59 | 1162 | + | No |
Chemistry : DDE
ORF sequence :
MPKTGRPRSIAAEHYPVLVKLAHAQPYSSQAELALVFFAETGITAHPDTFAKALKMAGITRVKQRAKGSFQSPEPNKAYGYNETHRRQLPEQLYPSCLTD
TEWALVADLFESQGGRGVPPLHSRRTLLEACCYVVRTGCSWRMLPRDFPHWDNVYKTFRRWSAQGKFEQMHDRLRAQWREREERADSPSAAILDSQSTRS
SPQGGDSGYDAGKKVKGRKRSLIVDTLGLLLAVSISAASVQDRDAADDAVAYSKEKYPSLSTLFVDSAYAGKWAQRTHQLHAIDVQVIRGPNNRRTGQWH
SEQGDLFSVEPVQTGFVVMPKRWVVERTHAWNERARRLIMHHDRLFAVSEAWVWLAEARILARRLTT
TEWALVADLFESQGGRGVPPLHSRRTLLEACCYVVRTGCSWRMLPRDFPHWDNVYKTFRRWSAQGKFEQMHDRLRAQWREREERADSPSAAILDSQSTRS
SPQGGDSGYDAGKKVKGRKRSLIVDTLGLLLAVSISAASVQDRDAADDAVAYSKEKYPSLSTLFVDSAYAGKWAQRTHQLHAIDVQVIRGPNNRRTGQWH
SEQGDLFSVEPVQTGFVVMPKRWVVERTHAWNERARRLIMHHDRLFAVSEAWVWLAEARILARRLTT
Blast result :
Comments
ISPsy19 is 54% aa similar to ISRtr3.
References
1] Joardar,V., Lindeberg,M., Jackson,R.W., Selengut,J., Dodson,R., Brinkac,L.M., Daugherty,S.C., Deboy,R., Durkin,A.S., Giglio,M.G., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S., Crabtree,J., Creasy,T., Davidsen,T., Haft,D.H., Zafar,N., Zhou,L., Halpin,R., Holley,T., Khouri,H., Feldblyum,T., White,O., Fraser,C.M., Chatterjee,A.K., Cartinhour,S., Schneider,D.J., Mansfield,J., Collmer,A. and Buell,C.R. (2005) J. Bacteriol. 187 (18), 6488-6498