ISRme4
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007973 | ND | Cupriavidus metallidurans | Cupriavidus metallidurans CH34 |
DNA section
IS Length : 2469 bp
Ends
IR Length : 27/28
IRL : TGTTGATTTGCACTGAATCCTGACCCACCCACGGCAGGTATTTGCATCGA
IRR : TGTTGATTTGCACCGAATCCTGACCCACGATTTGCATCGAAAATTGACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCAGAGTGCCATGTCCATAG | AACGGTGGACTTGGAGACCTC | 0 | |
AGCTCAAGGATGAGCAAGCT | TCCCAAGCTATCGAAGAAGA | 0 |
DNA sequence
TGTTGATTTGCACTGAATCCTGACCCACCCACGGCAGGTATTTGCATCGAATGTTGACCCACGTATAGAACACTTGCCCGCTTGGGAACGAGCGGGAGTT
CGGAGTGATCGACGTGGCCATACTGAGCATCATTCGACGCTGGCATCTTCGCGACCAGATCCCGCTGCGCGAGATCGCCAGACGCCTGGGTATTTCCAGG
AATACGGTCAGGCGCTATCTGCGCACTGACGTCACAGCACCCGCCTACCCCACACGGCAGAGCCCGAGCAAGCTCGACGGCCATGCCGCCAAGCTCGCCG
CGTGGCTCAAGACCGAGGCCAACAAGCCGCGTAAGCAACGACGCACGCTCAAGCAGATCCATGCCGATCTGTGTGCTCTGGGCTTCACGGGTTCCTATGA
TCGAGTCGCGGCGTTCGCGCGTCGCTGGCGTCAGGAACAGCAAGAGCAAGCGCGATCGTCGGGCCGCGGCACCTACATCCCCTTGCGCTTCGCCGAGGGT
GAGGCCTTCCAGTTCGACTGGAGCGAGGACTGGGCCGTCATCGCCGGCGAGCGCACCAAGCTGCAGGTGGCCCAGTTCAAGCTGAGCCACAGTCGGGCCT
TCTTCCTGCGCGCCTACCTGTTGCAGACCCACGAGATGCTGTTCGATGCCCATCACCATGCCTTTGTGGCGTGGGGCGGGATCCCGCGCCGCGGCATCTA
CGACAACATGAAGACGGCCGTCGACCGGGTGCGCCAGGGCAAGCTGCGCGACGTCAACCTGCGCTTTGGCACCATGGTCAGCCATTACCTGTTCGATGCC
GAGTTCTGCAATCCAGCCTCGGGCTGGGAGAAGGGCCAGATCGAGAAGAATGTCCAGGACAGCCGTCACCGGATCTGGCAACGTGTTCCTGCCTTCGGCT
CTCTGGCCGCGCTTAATGATTGGTTGGCCGACCAATGCGTGCGCCTGTGGCAGCAGACCCGCCACCCGGAGCTGGATATGACCATCTGGGAAGCCTGGTC
ACTGGAGCGGCCGCACCTGATGCCGGTGGGGCAGGCGTTCGACGGCTTTGTCGAACACACCAAGCGCGTGTCGCCTACCTGCCTGGTGAACTTCGAGCGC
AACCGCTACAGCGTGCCTGCCTCGTTTGCCAACCGGCCCATCAGTCTGCGTGTCTATGCCACGCGGCTCTTGTTTGTCGCCGAAGGCCAGGTGATTGCCG
AGCACGTACGGCACATCAATCGCGGTCACCATCCCGGCCATACGGTCTATGACTGGCGCCACTACCTCGCGGTGCTGCAGCGCAAGCCTGGCGCGCTGCG
CAACGGCGCACCGTTCGCCGAGTTGCCAGAGGGCTTCCGGCGCCTGCAGGCTACGCTGCTCAAGCGGCCCGGCGGCGATCGGGAGATGGTCGAGATCTTG
GCGCTTGTCCTATTGCACGACGAACAGGCCGTGCTGACCGCGGTGGAGCTGGCGCTCGAGGCAGGTGCCGCCTCCAAGCAGACCGTCCTCAATATCCTCA
GCCGCCTGCTCGAAGGTGGACCGGTAGCCCCCATCACCACGCCTCAGGCGCTGGCTTTGCAGGTCGAGCCGCAGGCCAACGTCGCGCGTTATGACAGTCT
GCGTGACCGGGAGGTGCCGCATGCAGCATGAAGCCATGATGGAGATGCTCAAATCCTTGAAGCTGCACGGCATGGCTCACGCGCTTGGCGACCTGGCGGC
GCAGGACTCGCCGGCCTATCAGTCCGCCGTCGCCATTCTGTCTCGCCTGCTCAAGGCAGAAACCACTGAGCGTGAAGTGCGCTCGCTGGCCTATCAGATG
AAGGTGGCGCGCTTTCCGGCCTACCGGGATCTGACCGGCTTCGACTTCAGTTGCAGCGAGGCCAACGAGGCGCTGGTGCGGCAACTCCACCGCTGCGAGT
TCCTAGAATCCGCCCACAACGTGGTGCTGGTCGGCGGCCCTGGCACGGGCAAGACGCATCTGGGTACCGCCATCGGTGTACAGGCCGTGGAGCATCACCA
CCGCCGGGTGCGCTTCTTCTCGACCGTCGAACTGGTCAACGCACTGGAACTGGAGAAGGTCTCTGGCAAGCCCGGCCATCTGGCCACGCGACTGATGTAC
GCAGACCTGGTGATCCTCGATGAGTTGGGCTATCTGCCCTTCAGCCAGGTCGGTGGCGCATTGCTGTTTCATCTGATCAGCAAGCTCTACGAGCGCACCA
GCCTGATCATCACCACCAACCTCAGCTTCGGGGAATGGTCCAGTGTCTTTGGGGATGCCAAGATGACCACTGCGCTGCTCGACCGCCTTACCCATCACTG
CCACATTGTGGAGACCGGAAACGATAGCTATCGTTTCAAGCACAGCACCACCCAACCAAAAAAGGAGAAACGCACCGCAAAACAGCCCGCACAAAGCGAC
ACCTAACAGCTTTTGGGGTGGGTCAATTTTCGATGCAAATCGTGGGTCAGGATTCGGTGCAAATCAACA
CGGAGTGATCGACGTGGCCATACTGAGCATCATTCGACGCTGGCATCTTCGCGACCAGATCCCGCTGCGCGAGATCGCCAGACGCCTGGGTATTTCCAGG
AATACGGTCAGGCGCTATCTGCGCACTGACGTCACAGCACCCGCCTACCCCACACGGCAGAGCCCGAGCAAGCTCGACGGCCATGCCGCCAAGCTCGCCG
CGTGGCTCAAGACCGAGGCCAACAAGCCGCGTAAGCAACGACGCACGCTCAAGCAGATCCATGCCGATCTGTGTGCTCTGGGCTTCACGGGTTCCTATGA
TCGAGTCGCGGCGTTCGCGCGTCGCTGGCGTCAGGAACAGCAAGAGCAAGCGCGATCGTCGGGCCGCGGCACCTACATCCCCTTGCGCTTCGCCGAGGGT
GAGGCCTTCCAGTTCGACTGGAGCGAGGACTGGGCCGTCATCGCCGGCGAGCGCACCAAGCTGCAGGTGGCCCAGTTCAAGCTGAGCCACAGTCGGGCCT
TCTTCCTGCGCGCCTACCTGTTGCAGACCCACGAGATGCTGTTCGATGCCCATCACCATGCCTTTGTGGCGTGGGGCGGGATCCCGCGCCGCGGCATCTA
CGACAACATGAAGACGGCCGTCGACCGGGTGCGCCAGGGCAAGCTGCGCGACGTCAACCTGCGCTTTGGCACCATGGTCAGCCATTACCTGTTCGATGCC
GAGTTCTGCAATCCAGCCTCGGGCTGGGAGAAGGGCCAGATCGAGAAGAATGTCCAGGACAGCCGTCACCGGATCTGGCAACGTGTTCCTGCCTTCGGCT
CTCTGGCCGCGCTTAATGATTGGTTGGCCGACCAATGCGTGCGCCTGTGGCAGCAGACCCGCCACCCGGAGCTGGATATGACCATCTGGGAAGCCTGGTC
ACTGGAGCGGCCGCACCTGATGCCGGTGGGGCAGGCGTTCGACGGCTTTGTCGAACACACCAAGCGCGTGTCGCCTACCTGCCTGGTGAACTTCGAGCGC
AACCGCTACAGCGTGCCTGCCTCGTTTGCCAACCGGCCCATCAGTCTGCGTGTCTATGCCACGCGGCTCTTGTTTGTCGCCGAAGGCCAGGTGATTGCCG
AGCACGTACGGCACATCAATCGCGGTCACCATCCCGGCCATACGGTCTATGACTGGCGCCACTACCTCGCGGTGCTGCAGCGCAAGCCTGGCGCGCTGCG
CAACGGCGCACCGTTCGCCGAGTTGCCAGAGGGCTTCCGGCGCCTGCAGGCTACGCTGCTCAAGCGGCCCGGCGGCGATCGGGAGATGGTCGAGATCTTG
GCGCTTGTCCTATTGCACGACGAACAGGCCGTGCTGACCGCGGTGGAGCTGGCGCTCGAGGCAGGTGCCGCCTCCAAGCAGACCGTCCTCAATATCCTCA
GCCGCCTGCTCGAAGGTGGACCGGTAGCCCCCATCACCACGCCTCAGGCGCTGGCTTTGCAGGTCGAGCCGCAGGCCAACGTCGCGCGTTATGACAGTCT
GCGTGACCGGGAGGTGCCGCATGCAGCATGAAGCCATGATGGAGATGCTCAAATCCTTGAAGCTGCACGGCATGGCTCACGCGCTTGGCGACCTGGCGGC
GCAGGACTCGCCGGCCTATCAGTCCGCCGTCGCCATTCTGTCTCGCCTGCTCAAGGCAGAAACCACTGAGCGTGAAGTGCGCTCGCTGGCCTATCAGATG
AAGGTGGCGCGCTTTCCGGCCTACCGGGATCTGACCGGCTTCGACTTCAGTTGCAGCGAGGCCAACGAGGCGCTGGTGCGGCAACTCCACCGCTGCGAGT
TCCTAGAATCCGCCCACAACGTGGTGCTGGTCGGCGGCCCTGGCACGGGCAAGACGCATCTGGGTACCGCCATCGGTGTACAGGCCGTGGAGCATCACCA
CCGCCGGGTGCGCTTCTTCTCGACCGTCGAACTGGTCAACGCACTGGAACTGGAGAAGGTCTCTGGCAAGCCCGGCCATCTGGCCACGCGACTGATGTAC
GCAGACCTGGTGATCCTCGATGAGTTGGGCTATCTGCCCTTCAGCCAGGTCGGTGGCGCATTGCTGTTTCATCTGATCAGCAAGCTCTACGAGCGCACCA
GCCTGATCATCACCACCAACCTCAGCTTCGGGGAATGGTCCAGTGTCTTTGGGGATGCCAAGATGACCACTGCGCTGCTCGACCGCCTTACCCATCACTG
CCACATTGTGGAGACCGGAAACGATAGCTATCGTTTCAAGCACAGCACCACCCAACCAAAAAAGGAGAAACGCACCGCAAAACAGCCCGCACAAAGCGAC
ACCTAACAGCTTTTGGGGTGGGTCAATTTTCGATGCAAATCGTGGGTCAGGATTCGGTGCAAATCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
994 bp | 331 aa | 635 | 1628 | + | No |
Chemistry : DDE
ORF sequence :
MLFDAHHHAFVAWGGIPRRGIYDNMKTAVDRVRQGKLRDVNLRFGTMVSHYLFDAEFCNPASGWEKGQIEKNVQDSRHRIWQRVPAFGSLAALNDWLADQ
CVRLWQQTRHPELDMTIWEAWSLERPHLMPVGQAFDGFVEHTKRVSPTCLVNFERNRYSVPASFANRPISLRVYATRLLFVAEGQVIAEHVRHINRGHHP
GHTVYDWRHYLAVLQRKPGALRNGAPFAELPEGFRRLQATLLKRPGGDREMVEILALVLLHDEQAVLTAVELALEAGAASKQTVLNILSRLLEGGPVAPI
TTPQALALQVEPQANVARYDSLRDREVPHAA
CVRLWQQTRHPELDMTIWEAWSLERPHLMPVGQAFDGFVEHTKRVSPTCLVNFERNRYSVPASFANRPISLRVYATRLLFVAEGQVIAEHVRHINRGHHP
GHTVYDWRHYLAVLQRKPGALRNGAPFAELPEGFRRLQATLLKRPGGDREMVEILALVLLHDEQAVLTAVELALEAGAASKQTVLNILSRLLEGGPVAPI
TTPQALALQVEPQANVARYDSLRDREVPHAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
814 bp | 271 aa | 1590 | 2403 | + | No |
AG : IS21 helper
ORF sequence :
MTVCVTGRCRMQHEAMMEMLKSLKLHGMAHALGDLAAQDSPAYQSAVAILSRLLKAETTEREVRSLAYQMKVARFPAYRDLTGFDFSCSEANEALVRQLH
RCEFLESAHNVVLVGGPGTGKTHLGTAIGVQAVEHHHRRVRFFSTVELVNALELEKVSGKPGHLATRLMYADLVILDELGYLPFSQVGGALLFHLISKLY
ERTSLIITTNLSFGEWSSVFGDAKMTTALLDRLTHHCHIVETGNDSYRFKHSTTQPKKEKRTAKQPAQSDT
RCEFLESAHNVVLVGGPGTGKTHLGTAIGVQAVEHHHRRVRFFSTVELVNALELEKVSGKPGHLATRLMYADLVILDELGYLPFSQVGGALLFHLISKLY
ERTSLIITTNLSFGEWSSVFGDAKMTTALLDRLTHHCHIVETGNDSYRFKHSTTQPKKEKRTAKQPAQSDT
Blast result :
Comments
ISRme4 is present in two copies on the chromsome of C. metallidurans CH34.
ISRme4 is 80% (ORFA) and 87% (ORFB) aa similar to IS1600.
ISRme4 is 80% (ORFA) and 87% (ORFB) aa similar to IS1600.
References